Wall clock time and date at job start Wed Apr 15 2020 11:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.34028 * 126.02839 * 2 1 4 4 H 0.97001 * 125.01887 * 0.23414 * 3 2 1 5 5 N 1.39952 * 109.95870 * 179.97438 * 3 2 1 6 6 C 1.32151 * 108.92254 * 359.97438 * 5 3 2 7 7 C 1.40955 * 134.52040 * 179.97438 * 6 5 3 8 8 C 1.37722 * 119.41802 * 180.02562 * 7 6 5 9 9 C 1.48342 * 119.30988 * 179.97438 * 8 7 6 10 10 C 1.39751 * 120.40988 * 359.68119 * 9 8 7 11 11 N 1.31907 * 121.13938 * 179.76637 * 10 9 8 12 12 C 1.31534 * 122.12666 * 0.49632 * 11 10 9 13 13 C 1.40772 * 120.67083 * 359.77290 * 12 11 10 14 14 C 1.41443 * 120.59993 * 179.97438 * 13 12 11 15 15 H 1.07995 * 120.00339 * 335.73823 * 14 13 12 16 16 C 1.39936 * 119.99860 * 155.73668 * 14 13 12 17 17 N 1.30828 * 120.00244 * 343.63905 * 16 14 13 18 18 Si 1.86797 * 119.99817 * 163.63721 * 16 14 13 19 19 H 1.48498 * 109.47187 * 89.99862 * 18 16 14 20 20 H 1.48497 * 109.47336 * 209.99847 * 18 16 14 21 21 H 1.48501 * 109.47390 * 330.00242 * 18 16 14 22 22 C 1.39174 * 120.41624 * 179.97438 * 9 8 7 23 23 C 1.40728 * 121.38403 * 359.95510 * 8 7 6 24 24 C 1.35355 * 121.61279 * 0.04211 * 23 8 7 25 25 C 1.38214 * 126.03030 * 179.97438 * 2 1 3 26 26 H 1.09005 * 109.46886 * 90.02603 * 1 2 3 27 27 H 1.09005 * 109.47370 * 210.02708 * 1 2 3 28 28 H 1.08996 * 109.47479 * 330.02711 * 1 2 3 29 29 H 1.07992 * 120.28861 * 0.03445 * 7 6 5 30 30 H 1.07994 * 119.43101 * 0.02562 * 10 9 8 31 31 H 1.07991 * 119.66137 * 179.74636 * 12 11 10 32 32 H 0.96999 * 120.00344 * 180.02562 * 17 16 14 33 33 H 1.08008 * 120.95506 * 0.02562 * 22 9 8 34 34 H 1.07994 * 119.19514 * 180.02562 * 23 8 7 35 35 H 1.08004 * 120.08026 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2952 1.0839 0.0000 4 1 1.9802 2.0013 0.0032 5 7 3.6401 0.6965 0.0006 6 6 3.7058 -0.6234 0.0015 7 6 4.7588 -1.5604 0.0020 8 6 4.4666 -2.9063 0.0025 9 6 5.5766 -3.8904 0.0024 10 6 6.9055 -3.4578 -0.0049 11 7 7.9036 -4.3202 -0.0005 12 6 7.7045 -5.6204 0.0012 13 6 6.3991 -6.1471 0.0032 14 6 6.1868 -7.5455 0.0045 15 1 6.9483 -8.2076 -0.3802 16 6 4.9900 -8.0710 0.5043 17 7 4.2123 -7.3308 1.2518 18 14 4.5031 -9.8295 0.1042 19 1 5.0477 -10.7421 1.1413 20 1 3.0224 -9.9390 0.0766 21 1 5.0521 -10.2053 -1.2234 22 6 5.3076 -5.2559 0.0034 23 6 3.1371 -3.3676 0.0035 24 6 2.0889 -2.5111 0.0031 25 6 2.3199 -1.1177 0.0005 26 1 -0.3633 -0.0005 -1.0277 27 1 -0.3634 -0.8898 0.5143 28 1 -0.3634 0.8902 0.5134 29 1 5.7856 -1.2259 0.0021 30 1 7.1189 -2.3992 -0.0101 31 1 8.5513 -6.2907 0.0007 32 1 3.3829 -7.6952 1.5986 33 1 4.2915 -5.6220 0.0038 34 1 2.9484 -4.4309 0.0042 35 1 1.0784 -2.8923 0.0035 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241640435.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:44 Heat of formation + Delta-G solvation = 106.723687 kcal Electronic energy + Delta-G solvation = -20037.900168 eV Core-core repulsion = 17001.366810 eV Total energy + Delta-G solvation = -3036.533358 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.08639 -38.60699 -36.65926 -34.11985 -32.98229 -31.92657 -30.49240 -29.95343 -28.46133 -26.78325 -25.61290 -23.81728 -22.49872 -21.20001 -20.25435 -19.54381 -17.65888 -16.95598 -16.61566 -15.85705 -15.16185 -15.08615 -14.82828 -14.57291 -13.62002 -13.47761 -13.30150 -13.12457 -12.93145 -12.57441 -12.48229 -12.00038 -11.74106 -11.45829 -11.37954 -11.24859 -11.18656 -10.84848 -10.61609 -9.99364 -9.91686 -9.88241 -9.40941 -9.05259 -8.13089 -7.89403 -7.50160 -7.08013 -6.85700 -4.52920 0.78806 1.85277 2.63259 2.72350 2.78842 3.00442 3.03144 3.05195 3.16998 3.82995 4.27276 4.44048 4.59804 4.63390 4.80872 5.19640 5.22888 5.51225 5.55433 5.64366 5.67530 5.73935 5.86372 6.00105 6.12567 6.40106 6.52706 6.67325 6.76121 6.80601 6.89251 7.02426 7.11952 7.19355 7.22396 7.32139 7.66294 7.80460 7.83071 7.89718 8.37310 8.63237 8.66216 9.58837 10.02952 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.021642 B = 0.004589 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.499183 B = 6099.861140 C = 7311.344625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.097 3.903 3 N -0.435 5.435 4 H 0.436 0.564 5 N -0.318 5.318 6 C 0.119 3.881 7 C -0.127 4.127 8 C 0.039 3.961 9 C -0.099 4.099 10 C -0.018 4.018 11 N -0.471 5.471 12 C -0.014 4.014 13 C 0.060 3.940 14 C -0.450 4.450 15 H 0.084 0.916 16 C 0.075 3.925 17 N -0.792 5.792 18 Si 0.911 3.089 19 H -0.268 1.268 20 H -0.275 1.275 21 H -0.259 1.259 22 C -0.110 4.110 23 C -0.129 4.129 24 C -0.058 4.058 25 C -0.203 4.203 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.071 0.929 29 H 0.131 0.869 30 H 0.125 0.875 31 H 0.127 0.873 32 H 0.284 0.716 33 H 0.136 0.864 34 H 0.132 0.868 35 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.243 8.951 -1.682 14.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.041 4.041 3 N -0.136 5.136 4 H 0.280 0.720 5 N -0.147 5.147 6 C -0.034 4.034 7 C -0.148 4.148 8 C 0.034 3.966 9 C -0.101 4.101 10 C -0.176 4.176 11 N -0.178 5.178 12 C -0.175 4.175 13 C 0.055 3.945 14 C -0.480 4.480 15 H 0.102 0.898 16 C -0.143 4.143 17 N -0.417 5.417 18 Si 0.735 3.265 19 H -0.193 1.193 20 H -0.200 1.200 21 H -0.183 1.183 22 C -0.136 4.136 23 C -0.148 4.148 24 C -0.078 4.078 25 C -0.213 4.213 26 H 0.101 0.899 27 H 0.107 0.893 28 H 0.090 0.910 29 H 0.148 0.852 30 H 0.142 0.858 31 H 0.145 0.855 32 H 0.095 0.905 33 H 0.153 0.847 34 H 0.150 0.850 35 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.898 10.379 -1.539 14.425 hybrid contribution -1.805 -1.298 0.015 2.223 sum -11.703 9.081 -1.524 14.891 Atomic orbital electron populations 1.20476 0.86778 1.04109 1.03548 1.21108 0.93998 0.87452 1.01496 1.46181 1.04893 1.08179 1.54332 0.72049 1.77689 0.92427 1.12316 1.32231 1.20822 0.94120 0.90632 0.97810 1.20090 0.96710 0.90119 1.07836 1.18700 0.92900 0.91840 0.93188 1.19478 0.92824 0.93374 1.04423 1.21877 0.87708 0.97510 1.10495 1.66969 1.36107 1.04200 1.10539 1.22586 0.95624 0.90427 1.08822 1.18473 0.91744 0.94411 0.89839 1.19548 1.01253 0.91819 1.35360 0.89828 1.25953 0.95551 1.00458 0.92384 1.69776 1.11104 1.38238 1.22578 0.86250 0.78343 0.81581 0.80292 1.19339 1.19969 1.18310 1.21898 1.00347 0.90119 1.01218 1.20834 0.91487 1.00468 1.01991 1.20052 0.98663 0.89780 0.99311 1.19365 0.92243 0.93889 1.15791 0.89894 0.89263 0.90983 0.85164 0.85798 0.85532 0.90517 0.84687 0.85017 0.86296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.64 10.44 36.00 0.38 -0.26 16 2 C 0.10 1.17 7.27 -81.65 -0.59 0.57 16 3 N -0.43 -5.29 7.18 33.85 0.24 -5.05 16 4 H 0.44 3.43 8.96 -182.71 -1.64 1.80 16 5 N -0.32 -5.35 12.71 33.23 0.42 -4.92 16 6 C 0.12 2.16 7.48 -83.09 -0.62 1.53 16 7 C -0.13 -2.44 9.49 -38.74 -0.37 -2.81 16 8 C 0.04 0.80 5.86 -104.99 -0.62 0.18 16 9 C -0.10 -2.29 5.88 -104.83 -0.62 -2.91 16 10 C -0.02 -0.42 10.57 -16.95 -0.18 -0.59 16 11 N -0.47 -11.73 10.32 -12.27 -0.13 -11.86 16 12 C -0.01 -0.35 10.96 -16.72 -0.18 -0.53 16 13 C 0.06 1.54 5.59 -106.71 -0.60 0.94 16 14 C -0.45 -11.29 9.09 -37.73 -0.34 -11.63 16 15 H 0.08 1.99 7.90 -52.49 -0.41 1.58 16 16 C 0.07 1.76 5.20 -17.34 -0.09 1.67 16 17 N -0.79 -19.13 10.90 55.55 0.61 -18.52 16 18 Si 0.91 17.56 29.59 -169.99 -5.03 12.53 16 19 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 20 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 21 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 22 C -0.11 -2.74 8.14 -38.23 -0.31 -3.05 16 23 C -0.13 -2.38 9.29 -39.67 -0.37 -2.75 16 24 C -0.06 -0.91 10.06 -39.47 -0.40 -1.30 16 25 C -0.20 -3.23 6.25 -105.15 -0.66 -3.88 16 26 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.13 2.42 6.11 -52.49 -0.32 2.09 16 30 H 0.12 2.61 6.13 -52.49 -0.32 2.29 16 31 H 0.13 2.92 8.06 -52.49 -0.42 2.50 16 32 H 0.28 6.20 8.30 -40.82 -0.34 5.86 16 33 H 0.14 3.32 4.36 -52.48 -0.23 3.09 16 34 H 0.13 2.47 6.12 -52.49 -0.32 2.15 16 35 H 0.12 1.47 8.06 -52.48 -0.42 1.04 16 LS Contribution 301.99 15.07 4.55 4.55 Total: -1.00 -30.21 301.99 -9.39 -39.60 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -4.49 Total: 8.48 kcal Atomic # 6 Polarization: -19.24 SS G_CDS: -5.56 Total: -24.81 kcal Atomic # 7 Polarization: -41.50 SS G_CDS: 1.14 Total: -40.36 kcal Atomic # 14 Polarization: 17.56 SS G_CDS: -5.03 Total: 12.53 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.21 -9.39 -39.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241640435.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.327 kcal (2) G-P(sol) polarization free energy of solvation -30.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds