Wall clock time and date at job start Wed Apr 15 2020 11:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.34187 * 126.01732 * 2 1 4 4 H 0.96999 * 125.03109 * 0.23995 * 3 2 1 5 5 N 1.39955 * 109.93243 * 179.97438 * 3 2 1 6 6 C 1.32275 * 108.88347 * 359.97438 * 5 3 2 7 7 C 1.40749 * 134.46502 * 179.97438 * 6 5 3 8 8 C 1.38368 * 119.37817 * 180.02562 * 7 6 5 9 9 C 1.47730 * 119.35649 * 179.97438 * 8 7 6 10 10 C 1.40420 * 120.35478 * 180.02562 * 9 8 7 11 11 C 1.36566 * 118.60387 * 179.97438 * 10 9 8 12 12 C 1.40938 * 119.26566 * 359.97438 * 11 10 9 13 13 C 1.40877 * 119.66936 * 180.02562 * 12 11 10 14 14 H 1.08000 * 119.99970 * 0.02562 * 13 12 11 15 15 C 1.40012 * 119.99504 * 180.02562 * 13 12 11 16 16 N 1.30758 * 120.00320 * 359.97438 * 15 13 12 17 17 Si 1.86807 * 119.99674 * 180.02562 * 15 13 12 18 18 H 1.48492 * 109.47386 * 89.99635 * 17 15 13 19 19 H 1.48495 * 109.47137 * 210.00278 * 17 15 13 20 20 H 1.48507 * 109.46716 * 330.00035 * 17 15 13 21 21 N 1.33828 * 120.66055 * 0.02562 * 12 11 10 22 22 C 1.31161 * 121.50588 * 359.71678 * 21 12 11 23 23 C 1.40908 * 121.28551 * 359.96057 * 8 7 6 24 24 C 1.35241 * 121.58691 * 0.02630 * 23 8 7 25 25 C 1.38088 * 126.01142 * 179.97438 * 2 1 3 26 26 H 1.09005 * 109.46979 * 90.02672 * 1 2 3 27 27 H 1.08994 * 109.47387 * 210.02404 * 1 2 3 28 28 H 1.09000 * 109.47324 * 330.02838 * 1 2 3 29 29 H 1.07994 * 120.30783 * 0.02562 * 7 6 5 30 30 H 1.08001 * 120.69639 * 359.95268 * 10 9 8 31 31 H 1.07994 * 120.36660 * 179.97438 * 11 10 9 32 32 H 0.97001 * 119.99712 * 179.97438 * 16 15 13 33 33 H 1.07997 * 119.66552 * 180.26962 * 22 21 12 34 34 H 1.08002 * 119.20697 * 180.02562 * 23 8 7 35 35 H 1.08001 * 120.04738 * 180.02562 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2960 1.0854 0.0000 4 1 1.9810 2.0028 0.0033 5 7 3.6408 0.6976 0.0006 6 6 3.7054 -0.6236 0.0015 7 6 4.7568 -1.5593 0.0020 8 6 4.4623 -2.9112 0.0025 9 6 5.5663 -3.8929 0.0024 10 6 5.2914 -5.2700 0.0023 11 6 6.3391 -6.1459 0.0017 12 6 7.6563 -5.6444 0.0005 13 6 8.7435 -6.5403 -0.0007 14 1 8.5654 -7.6056 -0.0011 15 6 10.0548 -6.0497 -0.0012 16 7 10.2704 -4.7600 -0.0012 17 14 11.4965 -7.2376 -0.0036 18 1 11.8774 -7.5511 -1.4042 19 1 12.6501 -6.6174 0.6962 20 1 11.1079 -8.4889 0.6956 21 7 7.8846 -4.3258 0.0006 22 6 6.8996 -3.4597 -0.0038 23 6 3.1300 -3.3699 0.0033 24 6 2.0852 -2.5112 0.0032 25 6 2.3188 -1.1170 0.0005 26 1 -0.3633 -0.0005 -1.0277 27 1 -0.3634 -0.8897 0.5142 28 1 -0.3634 0.8902 0.5134 29 1 5.7837 -1.2251 0.0019 30 1 4.2727 -5.6288 0.0031 31 1 6.1604 -7.2109 0.0020 32 1 11.1789 -4.4201 -0.0012 33 1 7.1179 -2.4020 -0.0080 34 1 2.9385 -4.4328 0.0041 35 1 1.0738 -2.8901 0.0043 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241640718.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:46 Heat of formation + Delta-G solvation = 96.283127 kcal Electronic energy + Delta-G solvation = -19734.264068 eV Core-core repulsion = 16697.277974 eV Total energy + Delta-G solvation = -3036.986094 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.13498 -40.25296 -37.98813 -35.57445 -33.96926 -33.11204 -32.52740 -30.98735 -30.42833 -27.68076 -27.47601 -25.03256 -23.89711 -22.77920 -21.78996 -20.69091 -19.49027 -18.39206 -17.70181 -17.55630 -16.73700 -16.16445 -16.04535 -15.82602 -14.97012 -14.85647 -14.47635 -14.31585 -14.25085 -13.79698 -13.68625 -13.56164 -13.00658 -12.92790 -12.75006 -12.61204 -12.53477 -12.38425 -12.04885 -11.77367 -11.29342 -11.11113 -11.00858 -10.39434 -10.01678 -9.52399 -8.95171 -8.41661 -8.36973 -6.51499 -0.37395 0.53259 1.11195 1.30775 1.40320 1.49734 1.55842 1.67761 1.91424 2.19410 2.73246 3.13891 3.41146 3.66261 3.94561 4.05017 4.12325 4.15575 4.29520 4.38286 4.51883 4.71292 4.77824 4.78816 4.90807 4.92277 4.94770 5.12886 5.15475 5.28749 5.46640 5.49149 5.58344 5.67313 5.78077 6.04049 6.08027 6.11221 6.26176 6.37939 6.64343 6.72578 6.88500 8.11929 8.35252 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.044664 B = 0.003412 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.755454 B = 8204.272984 C = 8815.883183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.138 3.862 3 N -0.424 5.424 4 H 0.454 0.546 5 N -0.371 5.371 6 C 0.103 3.897 7 C -0.189 4.189 8 C 0.061 3.939 9 C -0.272 4.272 10 C -0.031 4.031 11 C -0.284 4.284 12 C 0.217 3.783 13 C -0.443 4.443 14 H 0.100 0.900 15 C 0.016 3.984 16 N -0.746 5.746 17 Si 0.994 3.006 18 H -0.261 1.261 19 H -0.269 1.269 20 H -0.250 1.250 21 N -0.525 5.525 22 C 0.133 3.867 23 C -0.175 4.175 24 C -0.021 4.021 25 C -0.248 4.248 26 H 0.105 0.895 27 H 0.104 0.896 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.142 0.858 31 H 0.120 0.880 32 H 0.282 0.718 33 H 0.125 0.875 34 H 0.138 0.862 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.205 5.509 -0.003 19.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.002 4.002 3 N -0.126 5.126 4 H 0.301 0.699 5 N -0.201 5.201 6 C -0.048 4.048 7 C -0.211 4.211 8 C 0.056 3.944 9 C -0.277 4.277 10 C -0.054 4.054 11 C -0.306 4.306 12 C 0.094 3.906 13 C -0.473 4.473 14 H 0.118 0.882 15 C -0.206 4.206 16 N -0.366 5.366 17 Si 0.813 3.187 18 H -0.185 1.185 19 H -0.194 1.194 20 H -0.173 1.173 21 N -0.238 5.238 22 C -0.034 4.034 23 C -0.195 4.195 24 C -0.040 4.040 25 C -0.258 4.258 26 H 0.123 0.877 27 H 0.122 0.878 28 H 0.119 0.881 29 H 0.121 0.879 30 H 0.159 0.841 31 H 0.138 0.862 32 H 0.093 0.907 33 H 0.142 0.858 34 H 0.156 0.844 35 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -16.421 7.052 0.002 17.871 hybrid contribution -0.029 -0.568 -0.014 0.569 sum -16.449 6.484 -0.012 17.681 Atomic orbital electron populations 1.20779 0.82230 1.06307 1.05530 1.21953 0.96146 0.85845 0.96252 1.46292 1.03765 1.09548 1.53037 0.69893 1.77680 0.94990 1.12152 1.35266 1.20865 0.95285 0.91091 0.97595 1.19949 0.96233 0.91009 1.13906 1.18592 0.93194 0.91016 0.91610 1.19372 0.93153 0.93646 1.21546 1.21072 0.98860 0.91737 0.93765 1.21657 0.93500 0.99773 1.15676 1.19199 0.92723 0.89859 0.88853 1.20152 0.90847 0.94933 1.41328 0.88228 1.27197 1.03482 0.97433 0.92536 1.70263 1.23372 1.15510 1.27484 0.85033 0.75648 0.78384 0.79626 1.18541 1.19356 1.17302 1.68757 1.33141 1.02626 1.19290 1.23071 0.89121 0.98715 0.92527 1.20785 0.90810 1.00841 1.07024 1.20464 0.99890 0.89148 0.94540 1.19746 0.91531 0.95428 1.19046 0.87691 0.87757 0.88125 0.87851 0.84091 0.86183 0.90695 0.85765 0.84418 0.81864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.67 10.44 71.23 0.74 0.07 16 2 C 0.14 2.78 7.27 42.16 0.31 3.09 16 3 N -0.42 -9.61 7.19 -46.81 -0.34 -9.95 16 4 H 0.45 6.16 8.96 -213.41 -1.91 4.24 16 5 N -0.37 -13.01 12.72 -48.82 -0.62 -13.63 16 6 C 0.10 3.87 7.47 42.04 0.31 4.19 16 7 C -0.19 -7.92 9.50 22.91 0.22 -7.70 16 8 C 0.06 2.48 5.87 -20.08 -0.12 2.37 16 9 C -0.27 -12.65 5.91 -19.76 -0.12 -12.77 16 10 C -0.03 -1.37 9.44 22.41 0.21 -1.16 16 11 C -0.28 -13.75 9.76 22.54 0.22 -13.53 16 12 C 0.22 12.15 6.55 40.15 0.26 12.41 16 13 C -0.44 -23.74 9.11 23.35 0.21 -23.52 16 14 H 0.10 4.85 7.85 -2.91 -0.02 4.83 16 15 C 0.02 0.84 5.50 85.28 0.47 1.31 16 16 N -0.75 -40.82 11.44 21.83 0.25 -40.57 16 17 Si 0.99 37.43 29.56 68.60 2.03 39.46 16 18 H -0.26 -9.47 7.11 99.48 0.71 -8.77 16 19 H -0.27 -9.77 7.11 99.48 0.71 -9.06 16 20 H -0.25 -8.89 7.11 99.48 0.71 -8.18 16 21 N -0.53 -30.64 7.83 -188.17 -1.47 -32.11 16 22 C 0.13 7.00 10.58 85.27 0.90 7.90 16 23 C -0.18 -5.63 9.29 22.23 0.21 -5.42 16 24 C -0.02 -0.54 10.06 22.35 0.22 -0.31 16 25 C -0.25 -7.19 6.24 -20.20 -0.13 -7.32 16 26 H 0.10 0.49 8.14 -2.38 -0.02 0.47 16 27 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.10 4.58 6.11 -2.91 -0.02 4.56 16 30 H 0.14 4.90 6.20 -2.91 -0.02 4.88 16 31 H 0.12 5.18 8.06 -2.91 -0.02 5.15 16 32 H 0.28 13.92 8.29 -92.71 -0.77 13.15 16 33 H 0.13 6.27 6.14 -2.91 -0.02 6.25 16 34 H 0.14 3.81 6.11 -2.91 -0.02 3.80 16 35 H 0.16 2.63 8.06 -2.91 -0.02 2.60 16 Total: -1.00 -75.49 303.25 3.02 -72.47 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: -0.76 Total: 24.72 kcal Atomic # 6 Polarization: -44.32 SS G_CDS: 3.93 Total: -40.39 kcal Atomic # 7 Polarization: -94.08 SS G_CDS: -2.18 Total: -96.26 kcal Atomic # 14 Polarization: 37.43 SS G_CDS: 2.03 Total: 39.46 kcal Total: -75.49 3.02 -72.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241640718.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.755 kcal (2) G-P(sol) polarization free energy of solvation -75.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds