Wall clock time and date at job start Wed Apr 15 2020 11:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.34200 * 126.00878 * 2 1 4 4 H 0.96997 * 125.04134 * 0.03658 * 3 2 1 5 5 N 1.39955 * 109.92856 * 180.02562 * 3 2 1 6 6 C 1.32292 * 108.87844 * 359.97438 * 5 3 2 7 7 C 1.40721 * 134.46414 * 180.02562 * 6 5 3 8 8 C 1.38457 * 119.37593 * 179.97438 * 7 6 5 9 9 C 1.47572 * 119.36312 * 179.97438 * 8 7 6 10 10 C 1.39832 * 120.66200 * 310.26955 * 9 8 7 11 11 C 1.38279 * 118.47265 * 180.26677 * 10 9 8 12 12 C 1.39099 * 119.74989 * 359.48132 * 11 10 9 13 13 N 1.31266 * 121.36800 * 0.25821 * 12 11 10 14 14 C 1.33736 * 121.63755 * 359.97438 * 13 12 11 15 15 C 1.40691 * 119.94969 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99837 * 180.02562 * 15 14 13 17 17 C 1.40065 * 120.00150 * 0.02562 * 15 14 13 18 18 N 1.30750 * 119.99873 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00030 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47220 * 59.99662 * 19 17 15 21 21 H 1.48498 * 109.47163 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.46771 * 299.99859 * 19 17 15 23 23 C 1.40963 * 121.26722 * 0.25223 * 8 7 6 24 24 C 1.35213 * 121.57815 * 359.50177 * 23 8 7 25 25 C 1.38061 * 126.01208 * 180.02562 * 2 1 3 26 26 H 1.09001 * 109.47037 * 89.97301 * 1 2 3 27 27 H 1.09001 * 109.47222 * 209.97963 * 1 2 3 28 28 H 1.09008 * 109.47017 * 329.98152 * 1 2 3 29 29 H 1.07999 * 120.30973 * 359.93472 * 7 6 5 30 30 H 1.08005 * 120.76300 * 0.02562 * 10 9 8 31 31 H 1.08002 * 120.12869 * 179.76605 * 11 10 9 32 32 H 1.07999 * 119.31607 * 180.23467 * 12 11 10 33 33 H 0.97000 * 119.99384 * 180.02562 * 18 17 15 34 34 H 1.07999 * 119.20853 * 179.74564 * 23 8 7 35 35 H 1.08003 * 120.04259 * 180.24039 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2960 1.0856 0.0000 4 1 1.9810 2.0030 0.0005 5 7 3.6408 0.6979 -0.0006 6 6 3.7054 -0.6234 -0.0004 7 6 4.7566 -1.5589 -0.0003 8 6 4.4619 -2.9117 0.0004 9 6 5.5645 -3.8925 0.0000 10 6 6.6133 -3.7859 -0.9187 11 6 7.6202 -4.7330 -0.8824 12 6 7.5749 -5.7528 0.0624 13 7 6.5891 -5.8422 0.9246 14 6 5.5848 -4.9592 0.9358 15 6 4.5458 -5.0891 1.8755 16 1 3.7341 -4.3768 1.8849 17 6 4.5640 -6.1424 2.7986 18 7 5.5464 -7.0051 2.7868 19 14 3.1841 -6.3152 4.0458 20 1 1.8918 -6.4844 3.3340 21 1 3.4370 -7.5015 4.9025 22 1 3.1269 -5.0967 4.8928 23 6 3.1289 -3.3701 -0.0042 24 6 2.0847 -2.5111 0.0005 25 6 2.3187 -1.1168 -0.0005 26 1 -0.3633 0.0005 -1.0277 27 1 -0.3634 -0.8902 0.5135 28 1 -0.3633 0.8899 0.5142 29 1 5.7836 -1.2247 -0.0015 30 1 6.6345 -2.9845 -1.6424 31 1 8.4412 -4.6784 -1.5821 32 1 8.3670 -6.4866 0.0869 33 1 5.5588 -7.7346 3.4259 34 1 2.9370 -4.4330 -0.0076 35 1 1.0731 -2.8896 0.0007 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241641693.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:50 Heat of formation + Delta-G solvation = 98.857707 kcal Electronic energy + Delta-G solvation = -20426.426887 eV Core-core repulsion = 17389.552435 eV Total energy + Delta-G solvation = -3036.874452 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.13797 -40.19942 -37.85967 -35.55724 -33.96112 -33.30776 -32.18014 -30.95105 -30.14907 -27.71526 -27.47148 -25.29349 -23.34029 -23.01543 -21.73790 -20.73368 -19.38118 -18.34891 -17.85724 -17.24564 -16.62694 -16.14441 -16.04857 -15.98403 -15.10558 -14.76610 -14.73903 -14.25509 -13.97316 -13.74436 -13.67528 -13.34836 -13.00938 -12.86172 -12.79607 -12.76874 -12.51418 -12.33769 -12.00587 -11.58799 -11.20931 -11.12845 -10.98415 -10.23921 -9.76120 -9.49889 -9.04962 -8.41176 -8.29046 -6.45607 -0.29972 0.66078 1.03352 1.29092 1.41306 1.53440 1.56280 1.57560 1.91104 2.23280 2.85084 3.00765 3.42703 3.66740 3.95324 4.09642 4.15324 4.25127 4.35054 4.51507 4.58102 4.71985 4.78296 4.81539 4.84069 4.92048 5.01221 5.15581 5.22113 5.33372 5.44289 5.58516 5.65312 5.69043 5.82027 6.03659 6.10601 6.20846 6.33293 6.38155 6.71294 6.72648 6.99213 8.17499 8.42625 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.015941 B = 0.006230 C = 0.004741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.020930 B = 4493.418677 C = 5904.790935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.136 3.864 3 N -0.421 5.421 4 H 0.455 0.545 5 N -0.362 5.362 6 C 0.099 3.901 7 C -0.163 4.163 8 C 0.063 3.937 9 C -0.251 4.251 10 C -0.041 4.041 11 C -0.315 4.315 12 C 0.113 3.887 13 N -0.519 5.519 14 C 0.239 3.761 15 C -0.444 4.444 16 H 0.101 0.899 17 C 0.024 3.976 18 N -0.748 5.748 19 Si 0.978 3.022 20 H -0.248 1.248 21 H -0.268 1.268 22 H -0.263 1.263 23 C -0.154 4.154 24 C -0.035 4.035 25 C -0.239 4.239 26 H 0.106 0.894 27 H 0.099 0.901 28 H 0.102 0.898 29 H 0.107 0.893 30 H 0.118 0.882 31 H 0.127 0.873 32 H 0.140 0.860 33 H 0.280 0.720 34 H 0.118 0.882 35 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.055 10.091 -3.279 16.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.004 4.004 3 N -0.124 5.124 4 H 0.302 0.698 5 N -0.191 5.191 6 C -0.052 4.052 7 C -0.184 4.184 8 C 0.058 3.942 9 C -0.255 4.255 10 C -0.065 4.065 11 C -0.337 4.337 12 C -0.054 4.054 13 N -0.232 5.232 14 C 0.115 3.885 15 C -0.473 4.473 16 H 0.119 0.881 17 C -0.199 4.199 18 N -0.369 5.369 19 Si 0.797 3.203 20 H -0.171 1.171 21 H -0.192 1.192 22 H -0.188 1.188 23 C -0.173 4.173 24 C -0.055 4.055 25 C -0.248 4.248 26 H 0.124 0.876 27 H 0.118 0.882 28 H 0.121 0.879 29 H 0.125 0.875 30 H 0.136 0.864 31 H 0.145 0.855 32 H 0.157 0.843 33 H 0.091 0.909 34 H 0.136 0.864 35 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -12.286 10.361 -2.540 16.271 hybrid contribution 0.003 0.105 -0.159 0.191 sum -12.283 10.466 -2.699 16.361 Atomic orbital electron populations 1.20771 0.82362 1.06186 1.05542 1.21868 0.96085 0.85784 0.96705 1.46253 1.03711 1.09459 1.52957 0.69757 1.77646 0.94969 1.11762 1.34740 1.20840 0.95122 0.91142 0.98139 1.20033 0.96196 0.90452 1.11769 1.18490 0.93068 0.90989 0.91657 1.19712 0.99317 1.01748 1.04756 1.21267 0.92366 0.96851 0.96034 1.21534 1.03483 1.01748 1.06974 1.23063 0.95931 0.95694 0.90717 1.68724 1.02955 1.27642 1.23854 1.18945 0.91503 0.86893 0.91150 1.20072 1.06079 1.09799 1.11400 0.88144 1.27058 0.98945 0.94282 0.99612 1.70236 1.28504 1.08967 1.29206 0.85322 0.78607 0.78745 0.77585 1.17140 1.19226 1.18788 1.20737 0.91569 1.00134 1.04895 1.20379 0.99513 0.89485 0.96114 1.19671 0.91859 0.94995 1.18302 0.87582 0.88204 0.87949 0.87535 0.86373 0.85510 0.84272 0.90899 0.86391 0.82600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.90 10.44 71.24 0.74 -0.16 16 2 C 0.14 3.03 7.27 42.16 0.31 3.34 16 3 N -0.42 -9.92 7.19 -46.81 -0.34 -10.26 16 4 H 0.45 6.41 8.96 -213.42 -1.91 4.50 16 5 N -0.36 -12.78 12.72 -48.83 -0.62 -13.40 16 6 C 0.10 3.87 7.47 42.03 0.31 4.18 16 7 C -0.16 -7.08 9.57 22.93 0.22 -6.87 16 8 C 0.06 2.86 5.03 -20.09 -0.10 2.76 16 9 C -0.25 -12.65 5.49 -19.52 -0.11 -12.76 16 10 C -0.04 -1.89 9.59 22.67 0.22 -1.68 16 11 C -0.31 -14.14 10.10 22.49 0.23 -13.91 16 12 C 0.11 5.56 11.17 84.98 0.95 6.51 16 13 N -0.52 -29.39 7.85 -188.40 -1.48 -30.87 16 14 C 0.24 13.31 6.55 40.36 0.26 13.58 16 15 C -0.44 -23.78 7.90 23.31 0.18 -23.59 16 16 H 0.10 5.09 5.24 -2.91 -0.02 5.07 16 17 C 0.02 1.21 5.50 85.30 0.47 1.68 16 18 N -0.75 -40.13 11.46 21.85 0.25 -39.88 16 19 Si 0.98 37.57 29.56 68.60 2.03 39.60 16 20 H -0.25 -8.87 7.11 99.48 0.71 -8.17 16 21 H -0.27 -9.79 7.11 99.48 0.71 -9.08 16 22 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 23 C -0.15 -6.19 7.37 22.24 0.16 -6.03 16 24 C -0.04 -1.13 10.06 22.35 0.22 -0.90 16 25 C -0.24 -7.69 6.24 -20.20 -0.13 -7.82 16 26 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.10 0.91 8.14 -2.39 -0.02 0.90 16 28 H 0.10 0.48 8.14 -2.38 -0.02 0.46 16 29 H 0.11 4.70 8.01 -2.91 -0.02 4.67 16 30 H 0.12 4.87 8.05 -2.91 -0.02 4.85 16 31 H 0.13 4.78 8.06 -2.91 -0.02 4.76 16 32 H 0.14 6.00 8.06 -2.91 -0.02 5.98 16 33 H 0.28 13.59 8.29 -92.71 -0.77 12.82 16 34 H 0.12 4.93 7.19 -2.91 -0.02 4.91 16 35 H 0.16 3.61 8.06 -2.91 -0.02 3.59 16 Total: -1.00 -72.87 304.19 3.02 -69.85 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: -0.77 Total: 26.63 kcal Atomic # 6 Polarization: -45.62 SS G_CDS: 3.95 Total: -41.67 kcal Atomic # 7 Polarization: -92.23 SS G_CDS: -2.19 Total: -94.41 kcal Atomic # 14 Polarization: 37.57 SS G_CDS: 2.03 Total: 39.60 kcal Total: -72.87 3.02 -69.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241641693.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.711 kcal (2) G-P(sol) polarization free energy of solvation -72.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds