Wall clock time and date at job start Wed Apr 15 2020 11:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.33955 * 126.07222 * 2 1 4 4 H 0.96998 * 125.00749 * 0.05948 * 3 2 1 5 5 N 1.39937 * 109.98331 * 180.02562 * 3 2 1 6 6 C 1.32032 * 109.01216 * 0.02562 * 5 3 2 7 7 C 1.41283 * 134.42285 * 180.02562 * 6 5 3 8 8 C 1.35321 * 119.90545 * 179.97438 * 7 6 5 9 9 C 1.40764 * 121.69374 * 359.97438 * 8 7 6 10 10 C 1.48251 * 119.35604 * 179.97438 * 9 8 7 11 11 C 1.38979 * 119.62119 * 4.73604 * 10 9 8 12 12 C 1.40822 * 118.75707 * 179.71566 * 11 10 9 13 13 C 1.41531 * 120.98673 * 180.26883 * 12 11 10 14 14 H 1.07995 * 119.99945 * 203.55991 * 13 12 11 15 15 C 1.40044 * 119.99547 * 23.56570 * 13 12 11 16 16 N 1.30735 * 120.00363 * 17.01219 * 15 13 12 17 17 Si 1.86798 * 119.99694 * 197.00715 * 15 13 12 18 18 H 1.48499 * 109.47190 * 60.00464 * 17 15 13 19 19 H 1.48499 * 109.47175 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47307 * 300.00197 * 17 15 13 21 21 C 1.41169 * 118.03139 * 0.53531 * 12 11 10 22 22 C 1.37705 * 119.08497 * 359.73869 * 21 12 11 23 23 N 1.31944 * 121.17112 * 359.97438 * 22 21 12 24 24 C 1.37808 * 121.28447 * 0.28230 * 9 8 7 25 25 C 1.38402 * 126.06629 * 180.02562 * 2 1 3 26 26 H 1.09000 * 109.47657 * 89.97162 * 1 2 3 27 27 H 1.09001 * 109.47581 * 209.97299 * 1 2 3 28 28 H 1.08999 * 109.46927 * 329.96999 * 1 2 3 29 29 H 1.08004 * 120.04723 * 359.97387 * 7 6 5 30 30 H 1.07997 * 119.15127 * 179.97438 * 8 7 6 31 31 H 1.08004 * 120.62561 * 359.97438 * 11 10 9 32 32 H 0.96993 * 120.00311 * 179.97438 * 16 15 13 33 33 H 1.07998 * 120.45489 * 179.75504 * 21 12 11 34 34 H 1.08007 * 119.41451 * 179.97438 * 22 21 12 35 35 H 1.08003 * 120.32069 * 179.72702 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2957 1.0827 0.0000 4 1 1.9812 2.0003 0.0008 5 7 3.6403 0.6949 -0.0006 6 6 3.7076 -0.6237 -0.0015 7 6 4.7657 -1.5598 -0.0020 8 6 4.4938 -2.8854 -0.0024 9 6 3.1719 -3.3692 -0.0020 10 6 2.9334 -4.8324 -0.0031 11 6 4.0113 -5.7041 0.0951 12 6 3.7635 -7.0904 0.0984 13 6 4.8254 -8.0202 0.2021 14 1 4.6990 -9.0275 -0.1663 15 6 6.0400 -7.6340 0.7824 16 7 6.0992 -6.5547 1.5178 17 14 7.5755 -8.6611 0.5058 18 1 7.8755 -8.7216 -0.9473 19 1 8.7200 -8.0434 1.2226 20 1 7.3518 -10.0352 1.0227 21 6 2.4248 -7.5252 -0.0105 22 6 1.4220 -6.5866 -0.1093 23 7 1.6924 -5.2952 -0.1032 24 6 2.0951 -2.5091 -0.0068 25 6 2.3218 -1.1188 -0.0005 26 1 -0.3634 0.0005 -1.0276 27 1 -0.3634 -0.8902 0.5134 28 1 -0.3633 0.8897 0.5143 29 1 5.7902 -1.2180 -0.0019 30 1 5.3120 -3.5903 -0.0032 31 1 5.0199 -5.3255 0.1718 32 1 6.9404 -6.2875 1.9200 33 1 2.1905 -8.5794 -0.0160 34 1 0.3960 -6.9134 -0.1933 35 1 1.0872 -2.8973 -0.0108 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241667705.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:02 Heat of formation + Delta-G solvation = 106.986626 kcal Electronic energy + Delta-G solvation = -20097.800669 eV Core-core repulsion = 17061.278714 eV Total energy + Delta-G solvation = -3036.521956 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.04601 -38.51706 -36.52323 -34.14420 -32.93445 -31.22505 -30.70341 -29.95810 -28.65054 -26.34318 -26.00104 -23.66449 -22.33981 -21.39494 -20.17784 -19.46065 -17.61295 -17.33693 -16.26670 -15.63967 -15.03510 -14.99580 -14.49034 -14.20557 -13.62617 -13.51066 -13.30006 -13.03218 -12.91348 -12.67838 -12.50316 -12.29723 -11.57970 -11.47883 -11.29711 -11.20926 -11.04486 -10.77916 -10.30977 -10.06510 -9.85660 -9.75115 -9.41965 -8.56899 -8.06974 -7.98277 -7.80807 -6.89675 -6.68447 -4.60783 0.88370 1.95611 2.60865 2.80152 2.81699 3.01636 3.02400 3.04268 3.27956 3.84363 4.28765 4.51369 4.65405 4.72746 4.89930 5.30657 5.33175 5.37709 5.67646 5.70271 5.76397 5.87677 5.99476 6.06231 6.16098 6.52066 6.69085 6.80471 6.83302 6.84877 6.98669 7.10265 7.22182 7.23762 7.30096 7.43693 7.50154 7.82843 7.86868 8.10111 8.43428 8.71594 8.73131 9.57797 10.04993 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.023619 B = 0.004601 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.200747 B = 6084.099343 C = 7174.893471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.100 3.900 3 N -0.434 5.434 4 H 0.436 0.564 5 N -0.320 5.320 6 C 0.110 3.890 7 C -0.127 4.127 8 C -0.043 4.043 9 C -0.051 4.051 10 C 0.144 3.856 11 C -0.195 4.195 12 C 0.126 3.874 13 C -0.456 4.456 14 H 0.081 0.919 15 C 0.079 3.921 16 N -0.785 5.785 17 Si 0.911 3.089 18 H -0.262 1.262 19 H -0.276 1.276 20 H -0.264 1.264 21 C -0.275 4.275 22 C 0.104 3.896 23 N -0.568 5.568 24 C -0.026 4.026 25 C -0.197 4.197 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.071 0.929 29 H 0.125 0.875 30 H 0.136 0.864 31 H 0.132 0.868 32 H 0.285 0.715 33 H 0.100 0.900 34 H 0.121 0.879 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.356 10.225 -1.789 11.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.037 4.037 3 N -0.135 5.135 4 H 0.280 0.720 5 N -0.148 5.148 6 C -0.043 4.043 7 C -0.148 4.148 8 C -0.066 4.066 9 C -0.053 4.053 10 C 0.014 3.986 11 C -0.217 4.217 12 C 0.118 3.882 13 C -0.487 4.487 14 H 0.100 0.900 15 C -0.141 4.141 16 N -0.410 5.410 17 Si 0.735 3.265 18 H -0.186 1.186 19 H -0.201 1.201 20 H -0.189 1.189 21 C -0.299 4.299 22 C -0.052 4.052 23 N -0.283 5.283 24 C -0.047 4.047 25 C -0.207 4.207 26 H 0.102 0.898 27 H 0.110 0.890 28 H 0.090 0.910 29 H 0.143 0.857 30 H 0.154 0.846 31 H 0.150 0.850 32 H 0.096 0.904 33 H 0.118 0.882 34 H 0.139 0.861 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.168 12.083 -1.700 13.251 hybrid contribution 0.853 -1.361 0.118 1.611 sum -4.315 10.722 -1.582 11.665 Atomic orbital electron populations 1.20499 0.86590 1.04242 1.03687 1.21173 0.94113 0.87323 1.01115 1.46144 1.04851 1.08199 1.54310 0.72048 1.77575 0.92656 1.12462 1.32148 1.20983 0.94459 0.90669 0.98170 1.19669 0.96369 0.90813 1.07971 1.20948 0.96889 0.94770 0.93991 1.18369 0.92147 0.91813 1.03009 1.19238 0.89747 0.91018 0.98582 1.22268 0.98837 0.93401 1.07206 1.17769 0.91680 0.92386 0.86339 1.19584 0.95919 0.98652 1.34521 0.90047 1.25966 1.00638 0.95171 0.92358 1.69751 1.28275 1.21959 1.20992 0.86315 0.79792 0.80526 0.79872 1.18637 1.20130 1.18885 1.21890 0.93856 0.98615 1.15510 1.21784 0.97545 0.88729 0.97105 1.67260 1.21796 1.16300 1.22991 1.20593 0.99590 0.88564 0.95949 1.19383 0.92062 0.93967 1.15251 0.89781 0.88959 0.91013 0.85701 0.84623 0.85011 0.90400 0.88180 0.86146 0.84816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.78 10.44 36.00 0.38 -0.40 16 2 C 0.10 1.31 7.28 -81.61 -0.59 0.72 16 3 N -0.43 -5.43 7.18 33.87 0.24 -5.19 16 4 H 0.44 3.55 8.96 -182.72 -1.64 1.91 16 5 N -0.32 -5.32 12.70 33.28 0.42 -4.89 16 6 C 0.11 1.99 7.49 -83.00 -0.62 1.37 16 7 C -0.13 -2.26 10.06 -39.46 -0.40 -2.66 16 8 C -0.04 -0.84 9.26 -39.67 -0.37 -1.21 16 9 C -0.05 -1.08 5.86 -104.98 -0.62 -1.69 16 10 C 0.14 3.47 6.71 -83.04 -0.56 2.91 16 11 C -0.19 -4.96 8.12 -38.33 -0.31 -5.27 16 12 C 0.13 3.29 5.61 -106.55 -0.60 2.69 16 13 C -0.46 -11.65 9.12 -37.65 -0.34 -11.99 16 14 H 0.08 1.99 7.90 -52.49 -0.41 1.57 16 15 C 0.08 1.88 5.20 -17.34 -0.09 1.79 16 16 N -0.78 -19.33 10.91 55.55 0.61 -18.73 16 17 Si 0.91 17.86 29.59 -169.99 -5.03 12.83 16 18 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 19 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16 20 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 21 C -0.28 -6.62 9.90 -38.66 -0.38 -7.00 16 22 C 0.10 2.35 11.15 -17.70 -0.20 2.16 16 23 N -0.57 -13.44 9.32 -9.95 -0.09 -13.53 16 24 C -0.03 -0.49 9.62 -38.74 -0.37 -0.86 16 25 C -0.20 -3.38 6.25 -105.22 -0.66 -4.04 16 26 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.13 1.94 8.06 -52.48 -0.42 1.51 16 30 H 0.14 2.63 6.07 -52.49 -0.32 2.31 16 31 H 0.13 3.33 4.25 -52.48 -0.22 3.11 16 32 H 0.28 6.38 8.29 -40.82 -0.34 6.04 16 33 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 34 H 0.12 2.30 8.06 -52.48 -0.42 1.88 16 35 H 0.13 2.45 7.46 -52.48 -0.39 2.06 16 LS Contribution 304.60 15.07 4.59 4.59 Total: -1.00 -30.32 304.60 -9.65 -39.97 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -4.66 Total: 8.44 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: -5.73 Total: -23.49 kcal Atomic # 7 Polarization: -43.52 SS G_CDS: 1.18 Total: -42.34 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.03 Total: 12.83 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.32 -9.65 -39.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241667705.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.952 kcal (2) G-P(sol) polarization free energy of solvation -30.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds