Wall clock time and date at job start Wed Apr 15 2020 11:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39242 * 119.33515 * 2 1 4 4 C 1.35580 * 122.62962 * 179.73713 * 3 2 1 5 5 C 1.41091 * 120.51902 * 0.53544 * 4 3 2 6 6 N 1.32092 * 134.73377 * 179.76061 * 5 4 3 7 7 N 1.39971 * 108.92886 * 179.97438 * 6 5 4 8 8 H 0.96999 * 125.05074 * 180.02562 * 7 6 5 9 9 C 1.34122 * 109.90195 * 0.02562 * 7 6 5 10 10 C 1.37762 * 107.90561 * 359.97438 * 9 7 6 11 11 C 1.38060 * 119.33011 * 180.26906 * 2 1 3 12 12 C 1.48089 * 120.71055 * 0.02562 * 11 2 1 13 13 C 1.39882 * 120.42525 * 114.99299 * 12 11 2 14 14 N 1.31876 * 121.12242 * 180.02562 * 13 12 11 15 15 C 1.31538 * 122.14280 * 359.97438 * 14 13 12 16 16 C 1.40788 * 120.70288 * 359.97358 * 15 14 13 17 17 C 1.41445 * 120.60162 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99736 * 335.75318 * 17 16 15 19 19 C 1.39918 * 120.00449 * 155.74961 * 17 16 15 20 20 N 1.30834 * 120.00089 * 343.22764 * 19 17 16 21 21 Si 1.86801 * 120.00165 * 163.22769 * 19 17 16 22 22 H 1.48502 * 109.47228 * 60.00084 * 21 19 17 23 23 H 1.48497 * 109.47277 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46935 * 300.00023 * 21 19 17 25 25 C 1.39304 * 120.42664 * 294.72335 * 12 11 2 26 26 H 1.08999 * 109.47061 * 269.72587 * 1 2 3 27 27 H 1.08998 * 109.47232 * 149.72686 * 1 2 3 28 28 H 1.09003 * 109.47117 * 29.72596 * 1 2 3 29 29 H 1.08004 * 118.68695 * 0.02562 * 3 2 1 30 30 H 1.08004 * 119.74356 * 180.25498 * 4 3 2 31 31 H 1.08001 * 126.04041 * 179.97438 * 9 7 6 32 32 H 1.07993 * 119.43762 * 0.02562 * 13 12 11 33 33 H 1.08001 * 119.64817 * 179.97438 * 15 14 13 34 34 H 0.97004 * 120.00007 * 179.97438 * 20 19 17 35 35 H 1.07990 * 120.96296 * 359.97403 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1892 1.2139 0.0000 4 6 3.5428 1.2918 0.0052 5 6 4.3280 0.1196 -0.0003 6 7 5.6250 -0.1306 -0.0015 7 7 5.8200 -1.5167 -0.0075 8 1 6.6840 -1.9576 -0.0092 9 6 4.6348 -2.1445 -0.0107 10 6 3.6469 -1.1844 -0.0063 11 6 2.1833 -1.2036 -0.0057 12 6 1.4438 -2.4866 -0.0122 13 6 1.5320 -3.3494 -1.1097 14 7 0.8790 -4.4950 -1.1303 15 6 0.1178 -4.8847 -0.1309 16 6 -0.0300 -4.0814 1.0159 17 6 -0.8486 -4.5029 2.0896 18 1 -1.6507 -5.2045 1.9140 19 6 -0.6194 -4.0109 3.3792 20 7 0.5200 -3.4357 3.6670 21 14 -1.9400 -4.1752 4.6901 22 1 -2.2491 -5.6119 4.9040 23 1 -1.4533 -3.5797 5.9604 24 1 -3.1671 -3.4653 4.2482 25 6 0.6558 -2.8523 1.0768 26 1 -0.3633 -0.0049 1.0276 27 1 -0.3633 -0.8875 -0.5181 28 1 -0.3633 0.8925 -0.5096 29 1 1.6172 2.1300 0.0004 30 1 4.0238 2.2588 0.0092 31 1 4.4821 -3.2137 -0.0158 32 1 2.1453 -3.0728 -1.9544 33 1 -0.3994 -5.8310 -0.1906 34 1 0.6788 -3.0942 4.5610 35 1 0.5705 -2.2107 1.9412 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241521381.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:37 Heat of formation + Delta-G solvation = 108.142787 kcal Electronic energy + Delta-G solvation = -20673.282786 eV Core-core repulsion = 17636.810965 eV Total energy + Delta-G solvation = -3036.471821 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.83790 -38.50834 -36.93752 -34.14332 -32.90166 -31.15728 -30.44520 -29.79957 -28.73744 -25.92719 -25.63028 -23.54465 -21.96734 -21.50202 -20.61303 -19.33551 -17.87079 -17.28968 -16.13985 -15.59153 -15.23209 -14.94323 -14.64856 -14.41940 -14.18873 -13.78638 -12.97937 -12.85957 -12.67867 -12.31309 -11.85569 -11.63284 -11.57165 -11.39204 -11.34869 -11.13314 -11.02452 -10.96713 -10.66748 -10.35627 -9.88729 -9.59038 -9.42414 -8.42104 -8.22935 -8.06684 -7.70655 -7.00470 -6.90556 -4.55885 0.91007 2.20501 2.44130 2.73966 2.88427 2.96839 2.99096 3.00912 3.14899 3.80723 4.15560 4.50659 4.60351 4.97238 5.33250 5.37599 5.53832 5.59252 5.71180 5.85224 5.93230 5.98949 6.08202 6.23146 6.39063 6.52742 6.59933 6.70012 6.77981 6.79765 6.86550 7.00988 7.13177 7.20120 7.27444 7.33270 7.61334 7.78793 7.87191 7.87266 8.34624 8.61026 8.63465 9.55532 10.00003 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.018020 B = 0.005672 C = 0.005359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.455510 B = 4934.990901 C = 5224.016619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.134 4.134 3 C -0.054 4.054 4 C -0.128 4.128 5 C 0.108 3.892 6 N -0.320 5.320 7 N -0.439 5.439 8 H 0.439 0.561 9 C 0.094 3.906 10 C -0.190 4.190 11 C 0.071 3.929 12 C -0.092 4.092 13 C -0.023 4.023 14 N -0.469 5.469 15 C -0.019 4.019 16 C 0.062 3.938 17 C -0.450 4.450 18 H 0.083 0.917 19 C 0.075 3.925 20 N -0.788 5.788 21 Si 0.911 3.089 22 H -0.264 1.264 23 H -0.277 1.277 24 H -0.262 1.262 25 C -0.107 4.107 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.054 0.946 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.186 0.814 32 H 0.118 0.882 33 H 0.125 0.875 34 H 0.285 0.715 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.909 5.441 -2.185 7.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.136 4.136 3 C -0.076 4.076 4 C -0.149 4.149 5 C -0.047 4.047 6 N -0.149 5.149 7 N -0.140 5.140 8 H 0.283 0.717 9 C -0.061 4.061 10 C -0.200 4.200 11 C 0.068 3.932 12 C -0.094 4.094 13 C -0.181 4.181 14 N -0.176 5.176 15 C -0.180 4.180 16 C 0.058 3.942 17 C -0.479 4.479 18 H 0.101 0.899 19 C -0.144 4.144 20 N -0.412 5.412 21 Si 0.735 3.265 22 H -0.188 1.188 23 H -0.202 1.202 24 H -0.186 1.186 25 C -0.133 4.133 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.073 0.927 29 H 0.139 0.861 30 H 0.139 0.861 31 H 0.203 0.797 32 H 0.136 0.864 33 H 0.143 0.857 34 H 0.096 0.904 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 5.341 5.548 -2.709 8.164 hybrid contribution -0.789 -0.196 1.551 1.751 sum 4.552 5.352 -1.158 7.121 Atomic orbital electron populations 1.20684 0.91071 1.02068 1.02073 1.19534 0.96009 0.91503 1.06510 1.20355 0.93468 0.97223 0.96584 1.19599 0.92505 0.94778 1.08028 1.20861 0.90331 0.94748 0.98736 1.77541 1.15860 0.89958 1.31497 1.46204 1.08022 1.05468 1.54321 0.71701 1.22592 0.85070 0.99066 0.99372 1.20464 0.93471 0.91610 1.14421 1.19127 0.88427 0.92506 0.93125 1.19370 0.99739 0.93549 0.96771 1.21716 1.05648 0.92872 0.97817 1.66933 1.06395 1.15603 1.28665 1.22528 1.02974 0.99838 0.92708 1.18453 0.91568 0.90976 0.93226 1.19519 1.13675 1.23243 0.91482 0.89880 1.25952 0.95522 0.92863 1.00048 1.69773 1.21296 1.27839 1.22338 0.86310 0.81416 0.79827 0.78965 1.18828 1.20235 1.18609 1.21775 0.98068 0.96550 0.96868 0.91681 0.91205 0.92689 0.86096 0.86131 0.79714 0.86437 0.85701 0.90443 0.85181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.70 9.01 36.01 0.32 -1.37 16 2 C -0.13 -2.39 5.90 -104.31 -0.61 -3.00 16 3 C -0.05 -0.83 9.45 -40.16 -0.38 -1.20 16 4 C -0.13 -2.02 10.02 -39.45 -0.40 -2.42 16 5 C 0.11 1.92 7.50 -83.07 -0.62 1.30 16 6 N -0.32 -5.42 12.70 33.24 0.42 -5.00 16 7 N -0.44 -6.10 7.19 30.77 0.22 -5.88 16 8 H 0.44 4.17 8.96 -182.70 -1.64 2.53 16 9 C 0.09 1.48 12.01 -16.73 -0.20 1.28 16 10 C -0.19 -3.52 6.34 -103.20 -0.65 -4.18 16 11 C 0.07 1.41 5.50 -102.65 -0.57 0.85 16 12 C -0.09 -2.01 4.11 -104.84 -0.43 -2.44 16 13 C -0.02 -0.50 10.93 -16.92 -0.18 -0.68 16 14 N -0.47 -11.04 10.32 -12.24 -0.13 -11.17 16 15 C -0.02 -0.47 10.96 -16.71 -0.18 -0.65 16 16 C 0.06 1.55 5.59 -106.71 -0.60 0.95 16 17 C -0.45 -11.04 9.08 -37.73 -0.34 -11.38 16 18 H 0.08 1.94 7.90 -52.49 -0.41 1.52 16 19 C 0.08 1.76 5.19 -17.35 -0.09 1.67 16 20 N -0.79 -19.15 10.90 55.55 0.61 -18.55 16 21 Si 0.91 17.55 29.59 -169.99 -5.03 12.52 16 22 H -0.26 -5.03 7.11 56.52 0.40 -4.62 16 23 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 24 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 25 C -0.11 -2.57 7.59 -38.19 -0.29 -2.86 16 26 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.07 1.29 6.86 -51.93 -0.36 0.93 16 28 H 0.05 0.74 8.07 -51.93 -0.42 0.33 16 29 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 30 H 0.12 1.60 8.06 -52.48 -0.42 1.18 16 31 H 0.19 2.59 8.06 -52.49 -0.42 2.16 16 32 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 33 H 0.13 2.79 8.06 -52.49 -0.42 2.36 16 34 H 0.28 6.37 8.30 -40.82 -0.34 6.04 16 35 H 0.13 3.28 6.19 -52.49 -0.33 2.95 16 LS Contribution 305.93 15.07 4.61 4.61 Total: -1.00 -28.66 305.93 -9.35 -38.01 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -4.82 Total: 9.60 kcal Atomic # 6 Polarization: -18.91 SS G_CDS: -5.23 Total: -24.14 kcal Atomic # 7 Polarization: -41.71 SS G_CDS: 1.12 Total: -40.59 kcal Atomic # 14 Polarization: 17.55 SS G_CDS: -5.03 Total: 12.52 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.66 -9.35 -38.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241521381.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.150 kcal (2) G-P(sol) polarization free energy of solvation -28.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds