Wall clock time and date at job start Wed Apr 15 2020 11:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39242 * 119.33515 * 2 1 4 4 C 1.35580 * 122.62962 * 179.73713 * 3 2 1 5 5 C 1.41091 * 120.51902 * 0.53544 * 4 3 2 6 6 N 1.32092 * 134.73377 * 179.76061 * 5 4 3 7 7 N 1.39971 * 108.92886 * 179.97438 * 6 5 4 8 8 H 0.96999 * 125.05074 * 180.02562 * 7 6 5 9 9 C 1.34122 * 109.90195 * 0.02562 * 7 6 5 10 10 C 1.37762 * 107.90561 * 359.97438 * 9 7 6 11 11 C 1.38060 * 119.33011 * 180.26906 * 2 1 3 12 12 C 1.48089 * 120.71055 * 0.02562 * 11 2 1 13 13 C 1.39882 * 120.42525 * 114.99299 * 12 11 2 14 14 N 1.31876 * 121.12242 * 180.02562 * 13 12 11 15 15 C 1.31538 * 122.14280 * 359.97438 * 14 13 12 16 16 C 1.40788 * 120.70288 * 359.97358 * 15 14 13 17 17 C 1.41445 * 120.60162 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99736 * 335.75318 * 17 16 15 19 19 C 1.39918 * 120.00449 * 155.74961 * 17 16 15 20 20 N 1.30834 * 120.00089 * 343.22764 * 19 17 16 21 21 Si 1.86801 * 120.00165 * 163.22769 * 19 17 16 22 22 H 1.48502 * 109.47228 * 60.00084 * 21 19 17 23 23 H 1.48497 * 109.47277 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46935 * 300.00023 * 21 19 17 25 25 C 1.39304 * 120.42664 * 294.72335 * 12 11 2 26 26 H 1.08999 * 109.47061 * 269.72587 * 1 2 3 27 27 H 1.08998 * 109.47232 * 149.72686 * 1 2 3 28 28 H 1.09003 * 109.47117 * 29.72596 * 1 2 3 29 29 H 1.08004 * 118.68695 * 0.02562 * 3 2 1 30 30 H 1.08004 * 119.74356 * 180.25498 * 4 3 2 31 31 H 1.08001 * 126.04041 * 179.97438 * 9 7 6 32 32 H 1.07993 * 119.43762 * 0.02562 * 13 12 11 33 33 H 1.08001 * 119.64817 * 179.97438 * 15 14 13 34 34 H 0.97004 * 120.00007 * 179.97438 * 20 19 17 35 35 H 1.07990 * 120.96296 * 359.97403 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1892 1.2139 0.0000 4 6 3.5428 1.2918 0.0052 5 6 4.3280 0.1196 -0.0003 6 7 5.6250 -0.1306 -0.0015 7 7 5.8200 -1.5167 -0.0075 8 1 6.6840 -1.9576 -0.0092 9 6 4.6348 -2.1445 -0.0107 10 6 3.6469 -1.1844 -0.0063 11 6 2.1833 -1.2036 -0.0057 12 6 1.4438 -2.4866 -0.0122 13 6 1.5320 -3.3494 -1.1097 14 7 0.8790 -4.4950 -1.1303 15 6 0.1178 -4.8847 -0.1309 16 6 -0.0300 -4.0814 1.0159 17 6 -0.8486 -4.5029 2.0896 18 1 -1.6507 -5.2045 1.9140 19 6 -0.6194 -4.0109 3.3792 20 7 0.5200 -3.4357 3.6670 21 14 -1.9400 -4.1752 4.6901 22 1 -2.2491 -5.6119 4.9040 23 1 -1.4533 -3.5797 5.9604 24 1 -3.1671 -3.4653 4.2482 25 6 0.6558 -2.8523 1.0768 26 1 -0.3633 -0.0049 1.0276 27 1 -0.3633 -0.8875 -0.5181 28 1 -0.3633 0.8925 -0.5096 29 1 1.6172 2.1300 0.0004 30 1 4.0238 2.2588 0.0092 31 1 4.4821 -3.2137 -0.0158 32 1 2.1453 -3.0728 -1.9544 33 1 -0.3994 -5.8310 -0.1906 34 1 0.6788 -3.0942 4.5610 35 1 0.5705 -2.2107 1.9412 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241521381.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:36 Heat of formation + Delta-G solvation = 92.626519 kcal Electronic energy + Delta-G solvation = -20673.955622 eV Core-core repulsion = 17636.810965 eV Total energy + Delta-G solvation = -3037.144657 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.10852 -40.23168 -38.30292 -35.94064 -34.32542 -32.53482 -32.24978 -31.15224 -30.19069 -27.48747 -27.27945 -24.85358 -23.68815 -23.17546 -21.91099 -20.81242 -19.16236 -18.94600 -17.60441 -17.27455 -16.96348 -16.31722 -16.12900 -15.77260 -15.59774 -15.29073 -14.47376 -14.27031 -14.06826 -13.96112 -13.52796 -13.27896 -13.14767 -13.01278 -12.72775 -12.70631 -12.36080 -12.28639 -12.20199 -11.89655 -11.34711 -11.18588 -10.99492 -10.06306 -9.91949 -9.62062 -9.45282 -8.67794 -8.37320 -6.43136 -0.38775 0.70063 0.92915 1.05607 1.40857 1.45630 1.51281 1.55843 1.83726 2.19374 2.71400 2.84729 3.34101 3.67943 3.72650 4.01831 4.11248 4.20804 4.29943 4.45782 4.56480 4.66272 4.72173 4.82452 4.86424 4.89491 5.08073 5.12071 5.23738 5.27771 5.29679 5.52201 5.54645 5.79063 5.84411 5.92350 5.99262 6.06345 6.26915 6.50893 6.60892 6.78202 6.79769 7.71642 8.25002 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.018020 B = 0.005672 C = 0.005359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.455510 B = 4934.990901 C = 5224.016619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.131 4.131 3 C -0.057 4.057 4 C -0.122 4.122 5 C 0.088 3.912 6 N -0.332 5.332 7 N -0.417 5.417 8 H 0.458 0.542 9 C 0.097 3.903 10 C -0.218 4.218 11 C 0.031 3.969 12 C -0.073 4.073 13 C -0.026 4.026 14 N -0.477 5.477 15 C -0.038 4.038 16 C 0.040 3.960 17 C -0.479 4.479 18 H 0.086 0.914 19 C 0.039 3.961 20 N -0.817 5.817 21 Si 0.981 3.019 22 H -0.258 1.258 23 H -0.270 1.270 24 H -0.258 1.258 25 C -0.121 4.121 26 H 0.058 0.942 27 H 0.043 0.957 28 H 0.089 0.911 29 H 0.159 0.841 30 H 0.149 0.851 31 H 0.199 0.801 32 H 0.136 0.864 33 H 0.134 0.866 34 H 0.290 0.710 35 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.263 6.875 -1.909 8.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.133 4.133 3 C -0.079 4.079 4 C -0.143 4.143 5 C -0.065 4.065 6 N -0.161 5.161 7 N -0.120 5.120 8 H 0.306 0.694 9 C -0.060 4.060 10 C -0.228 4.228 11 C 0.028 3.972 12 C -0.075 4.075 13 C -0.184 4.184 14 N -0.184 5.184 15 C -0.198 4.198 16 C 0.036 3.964 17 C -0.508 4.508 18 H 0.104 0.896 19 C -0.177 4.177 20 N -0.442 5.442 21 Si 0.802 3.198 22 H -0.182 1.182 23 H -0.195 1.195 24 H -0.182 1.182 25 C -0.147 4.147 26 H 0.076 0.924 27 H 0.062 0.938 28 H 0.108 0.892 29 H 0.177 0.823 30 H 0.167 0.833 31 H 0.216 0.784 32 H 0.153 0.847 33 H 0.151 0.849 34 H 0.101 0.899 35 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 5.728 6.971 -2.449 9.349 hybrid contribution -0.771 -0.583 1.392 1.695 sum 4.957 6.387 -1.056 8.154 Atomic orbital electron populations 1.20664 0.90669 1.02491 1.01708 1.19851 0.96522 0.91994 1.04895 1.20656 0.93639 0.97530 0.96077 1.20031 0.92691 0.95407 1.06170 1.21244 0.90603 0.95260 0.99426 1.77467 1.15588 0.91309 1.31717 1.46182 1.08615 1.04629 1.52596 0.69382 1.22774 0.85123 0.99430 0.98668 1.20656 0.93319 0.92945 1.15831 1.19130 0.89271 0.92073 0.96720 1.19467 0.98264 0.94313 0.95476 1.22053 1.05377 0.92529 0.98432 1.66941 1.06558 1.16327 1.28607 1.22674 1.03842 1.00407 0.92922 1.18758 0.92179 0.91611 0.93876 1.19790 1.14254 1.24394 0.92381 0.89594 1.26752 0.97311 0.91978 1.01683 1.69835 1.22856 1.28333 1.23146 0.85249 0.78420 0.79987 0.76173 1.18204 1.19475 1.18236 1.21663 0.99516 0.96351 0.97206 0.92351 0.93784 0.89221 0.82308 0.83345 0.78408 0.84670 0.84884 0.89899 0.86778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.20 9.01 71.24 0.64 -2.56 16 2 C -0.13 -4.53 5.90 -19.66 -0.12 -4.65 16 3 C -0.06 -1.59 9.45 21.90 0.21 -1.39 16 4 C -0.12 -3.54 10.02 22.35 0.22 -3.32 16 5 C 0.09 3.01 7.50 42.14 0.32 3.32 16 6 N -0.33 -10.62 12.70 -48.74 -0.62 -11.24 16 7 N -0.42 -10.85 7.19 -56.57 -0.41 -11.26 16 8 H 0.46 7.74 8.96 -213.40 -1.91 5.83 16 9 C 0.10 2.95 12.01 84.23 1.01 3.96 16 10 C -0.22 -7.92 6.34 -18.94 -0.12 -8.04 16 11 C 0.03 1.24 5.50 -18.59 -0.10 1.13 16 12 C -0.07 -3.25 4.11 -20.01 -0.08 -3.33 16 13 C -0.03 -1.15 10.93 85.08 0.93 -0.22 16 14 N -0.48 -22.81 10.32 -192.64 -1.99 -24.79 16 15 C -0.04 -1.88 10.96 85.36 0.94 -0.94 16 16 C 0.04 2.06 5.59 -21.22 -0.12 1.94 16 17 C -0.48 -24.14 9.08 23.47 0.21 -23.93 16 18 H 0.09 4.12 7.90 -2.91 -0.02 4.09 16 19 C 0.04 1.85 5.19 85.25 0.44 2.29 16 20 N -0.82 -40.42 10.90 21.82 0.24 -40.18 16 21 Si 0.98 35.84 29.59 68.60 2.03 37.87 16 22 H -0.26 -9.12 7.11 99.48 0.71 -8.42 16 23 H -0.27 -9.47 7.11 99.48 0.71 -8.76 16 24 H -0.26 -9.22 7.11 99.48 0.71 -8.51 16 25 C -0.12 -6.03 7.59 23.17 0.18 -5.85 16 26 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.04 1.64 6.86 -2.39 -0.02 1.62 16 28 H 0.09 2.23 8.07 -2.39 -0.02 2.21 16 29 H 0.16 3.18 8.06 -2.91 -0.02 3.16 16 30 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 31 H 0.20 5.39 8.06 -2.91 -0.02 5.36 16 32 H 0.14 5.45 8.06 -2.91 -0.02 5.43 16 33 H 0.13 6.13 8.06 -2.91 -0.02 6.11 16 34 H 0.29 13.13 8.30 -92.71 -0.77 12.36 16 35 H 0.11 5.99 6.19 -2.92 -0.02 5.97 16 Total: -1.00 -62.45 305.93 3.04 -59.41 By element: Atomic # 1 Polarization: 32.54 SS G_CDS: -0.77 Total: 31.77 kcal Atomic # 6 Polarization: -46.14 SS G_CDS: 4.56 Total: -41.58 kcal Atomic # 7 Polarization: -84.69 SS G_CDS: -2.78 Total: -87.47 kcal Atomic # 14 Polarization: 35.84 SS G_CDS: 2.03 Total: 37.87 kcal Total: -62.45 3.04 -59.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241521381.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.035 kcal (2) G-P(sol) polarization free energy of solvation -62.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds