Wall clock time and date at job start Wed Apr 15 2020 11:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38807 * 119.37858 * 2 1 4 4 C 1.35959 * 122.66602 * 179.69693 * 3 2 1 5 5 C 1.41003 * 120.60927 * 0.57268 * 4 3 2 6 6 N 1.32165 * 134.66951 * 179.72003 * 5 4 3 7 7 N 1.39983 * 108.89420 * 180.02562 * 6 5 4 8 8 H 0.96998 * 125.06764 * 179.97438 * 7 6 5 9 9 C 1.34313 * 109.85701 * 359.97438 * 7 6 5 10 10 C 1.37578 * 107.92272 * 359.97438 * 9 7 6 11 11 C 1.38897 * 119.37130 * 180.26973 * 2 1 3 12 12 C 1.47282 * 120.74519 * 359.97438 * 11 2 1 13 13 C 1.40660 * 120.36883 * 294.71999 * 12 11 2 14 14 C 1.36415 * 118.59303 * 179.75151 * 13 12 11 15 15 C 1.41027 * 119.29028 * 0.48187 * 14 13 12 16 16 C 1.40726 * 119.65470 * 179.76289 * 15 14 13 17 17 H 1.07997 * 119.99699 * 0.02562 * 16 15 14 18 18 C 1.39956 * 119.99581 * 180.02562 * 16 15 14 19 19 N 1.30795 * 120.00195 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99726 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47279 * 89.99689 * 20 18 16 22 22 H 1.48496 * 109.47102 * 209.99880 * 20 18 16 23 23 H 1.48502 * 109.47046 * 330.00150 * 20 18 16 24 24 N 1.33884 * 120.68858 * 359.78291 * 15 14 13 25 25 C 1.31105 * 121.52282 * 359.97438 * 24 15 14 26 26 H 1.08999 * 109.47015 * 269.73255 * 1 2 3 27 27 H 1.09000 * 109.46646 * 29.72408 * 1 2 3 28 28 H 1.09000 * 109.47248 * 149.73125 * 1 2 3 29 29 H 1.08007 * 118.66355 * 359.97438 * 3 2 1 30 30 H 1.07996 * 119.69274 * 180.27809 * 4 3 2 31 31 H 1.08006 * 126.03942 * 179.97438 * 9 7 6 32 32 H 1.08004 * 120.70195 * 0.02562 * 13 12 11 33 33 H 1.08004 * 120.35799 * 180.24806 * 14 13 12 34 34 H 0.97001 * 119.99860 * 180.02562 * 19 18 16 35 35 H 1.07997 * 119.67952 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1880 1.2096 0.0000 4 6 3.5454 1.2875 0.0061 5 6 4.3318 0.1172 0.0006 6 7 5.6301 -0.1298 -0.0006 7 7 5.8279 -1.5156 -0.0076 8 1 6.6926 -1.9551 -0.0102 9 6 4.6418 -2.1457 -0.0104 10 6 3.6538 -1.1884 -0.0046 11 6 2.1883 -1.2104 -0.0057 12 6 1.4545 -2.4874 -0.0111 13 6 0.6606 -2.8561 1.0899 14 6 -0.0075 -4.0445 1.0443 15 6 0.1250 -4.8673 -0.0934 16 6 -0.5569 -6.0972 -0.1465 17 1 -1.1779 -6.4064 0.6811 18 6 -0.4300 -6.9195 -1.2719 19 7 0.3217 -6.5447 -2.2744 20 14 -1.3345 -8.5524 -1.3420 21 1 -2.6749 -8.3503 -1.9486 22 1 -0.5581 -9.5133 -2.1661 23 1 -1.4897 -9.0918 0.0328 24 7 0.8930 -4.4906 -1.1234 25 6 1.5442 -3.3528 -1.1127 26 1 -0.3633 -0.0048 1.0277 27 1 -0.3632 0.8925 -0.5096 28 1 -0.3634 -0.8876 -0.5180 29 1 1.6163 2.1259 -0.0004 30 1 4.0256 2.2548 0.0103 31 1 4.4904 -3.2151 -0.0161 32 1 0.5782 -2.2098 1.9513 33 1 -0.6283 -4.3539 1.8722 34 1 0.4093 -7.1145 -3.0545 35 1 2.1557 -3.0787 -1.9597 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241521500.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:39 Heat of formation + Delta-G solvation = 118.375386 kcal Electronic energy + Delta-G solvation = -20355.317353 eV Core-core repulsion = 17319.289251 eV Total energy + Delta-G solvation = -3036.028102 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.76899 -38.38325 -36.85185 -33.92445 -32.47680 -31.02250 -30.67798 -29.74567 -28.96731 -26.56618 -25.03434 -23.38795 -21.80569 -21.52118 -20.54616 -19.27711 -17.81400 -17.58763 -16.27500 -15.66378 -14.91660 -14.58258 -14.43444 -14.31388 -14.09349 -13.89166 -12.92315 -12.81404 -12.61578 -12.22013 -12.09050 -11.73895 -11.40261 -11.25911 -11.19866 -11.09653 -10.96692 -10.90369 -10.63824 -10.17597 -9.89217 -9.60809 -9.43074 -8.39479 -8.29776 -7.74611 -7.64845 -6.93706 -6.53237 -4.64760 0.94575 2.25425 2.51111 2.81615 2.97518 3.00444 3.02152 3.03335 3.11899 3.82418 4.20182 4.59787 4.65454 5.02114 5.39481 5.47297 5.64941 5.74512 5.82229 5.92269 5.98834 6.02122 6.09745 6.13958 6.23044 6.54734 6.60596 6.68930 6.73708 6.85392 6.89024 6.97247 7.20734 7.28155 7.32442 7.36527 7.51780 7.69547 7.91619 7.92806 8.08537 8.50115 8.79073 9.98374 10.14857 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.025868 B = 0.004583 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.152091 B = 6108.134538 C = 6787.986855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.156 4.156 3 C -0.048 4.048 4 C -0.143 4.143 5 C 0.109 3.891 6 N -0.325 5.325 7 N -0.442 5.442 8 H 0.439 0.561 9 C 0.093 3.907 10 C -0.197 4.197 11 C 0.105 3.895 12 C -0.279 4.279 13 C -0.028 4.028 14 C -0.273 4.273 15 C 0.254 3.746 16 C -0.416 4.416 17 H 0.086 0.914 18 C 0.066 3.934 19 N -0.704 5.704 20 Si 0.909 3.091 21 H -0.267 1.267 22 H -0.275 1.275 23 H -0.260 1.260 24 N -0.488 5.488 25 C 0.156 3.844 26 H 0.056 0.944 27 H 0.051 0.949 28 H 0.070 0.930 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.185 0.815 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.275 0.725 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.983 6.179 2.455 7.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.158 4.158 3 C -0.071 4.071 4 C -0.165 4.165 5 C -0.045 4.045 6 N -0.154 5.154 7 N -0.143 5.143 8 H 0.282 0.718 9 C -0.062 4.062 10 C -0.207 4.207 11 C 0.101 3.899 12 C -0.285 4.285 13 C -0.051 4.051 14 C -0.296 4.296 15 C 0.131 3.869 16 C -0.446 4.446 17 H 0.104 0.896 18 C -0.161 4.161 19 N -0.325 5.325 20 Si 0.732 3.268 21 H -0.192 1.192 22 H -0.200 1.200 23 H -0.184 1.184 24 N -0.199 5.199 25 C -0.012 4.012 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.089 0.911 29 H 0.135 0.865 30 H 0.135 0.865 31 H 0.202 0.798 32 H 0.113 0.887 33 H 0.117 0.883 34 H 0.087 0.913 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 5.288 6.027 1.538 8.164 hybrid contribution -0.651 -0.758 0.700 1.221 sum 4.637 5.269 2.238 7.367 Atomic orbital electron populations 1.20598 0.91379 1.02066 1.01282 1.19647 0.95797 0.91609 1.08746 1.20326 0.93377 0.97230 0.96136 1.19581 0.92470 0.94656 1.09767 1.20871 0.90301 0.94829 0.98455 1.77576 1.15885 0.89941 1.31948 1.46281 1.07996 1.05495 1.54558 0.71805 1.22598 0.85093 0.99049 0.99456 1.20678 0.94026 0.91429 1.14521 1.19109 0.87768 0.92416 0.90593 1.18900 1.11771 0.97645 1.00153 1.20541 0.93844 0.95183 0.95555 1.21364 1.08598 0.98247 1.01349 1.18624 0.89199 0.92258 0.86828 1.19642 1.22666 1.00399 1.01871 0.89624 1.26132 0.94867 0.99928 0.95163 1.70160 1.24805 1.34138 1.03361 0.86298 0.79986 0.80849 0.79619 1.19224 1.19987 1.18416 1.68819 1.10245 1.14089 1.26784 1.22697 0.94669 0.89584 0.94292 0.92524 0.93023 0.91080 0.86508 0.86470 0.79792 0.88716 0.88287 0.91346 0.86535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.51 9.02 36.01 0.32 -1.19 16 2 C -0.16 -2.66 5.91 -104.16 -0.62 -3.28 16 3 C -0.05 -0.72 9.45 -40.19 -0.38 -1.10 16 4 C -0.14 -2.25 10.03 -39.35 -0.39 -2.65 16 5 C 0.11 1.93 7.49 -83.08 -0.62 1.30 16 6 N -0.33 -5.47 12.71 33.24 0.42 -5.04 16 7 N -0.44 -6.06 7.20 30.77 0.22 -5.84 16 8 H 0.44 4.14 8.96 -182.69 -1.64 2.50 16 9 C 0.09 1.43 12.01 -16.71 -0.20 1.23 16 10 C -0.20 -3.53 6.33 -103.18 -0.65 -4.19 16 11 C 0.10 1.97 5.50 -102.62 -0.56 1.41 16 12 C -0.28 -5.81 4.15 -104.50 -0.43 -6.24 16 13 C -0.03 -0.58 8.92 -39.33 -0.35 -0.93 16 14 C -0.27 -6.27 9.76 -39.18 -0.38 -6.65 16 15 C 0.25 6.52 6.54 -84.97 -0.56 5.97 16 16 C -0.42 -10.46 9.10 -38.00 -0.35 -10.81 16 17 H 0.09 2.01 7.85 -52.49 -0.41 1.60 16 18 C 0.07 1.58 5.49 -17.35 -0.10 1.48 16 19 N -0.70 -17.76 11.43 55.55 0.63 -17.12 16 20 Si 0.91 17.52 29.56 -169.99 -5.02 12.50 16 21 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 22 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 23 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 24 N -0.49 -12.61 7.82 -10.80 -0.08 -12.70 16 25 C 0.16 3.55 10.95 -17.06 -0.19 3.36 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.05 0.68 8.07 -51.93 -0.42 0.26 16 28 H 0.07 1.27 6.89 -51.93 -0.36 0.92 16 29 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 30 H 0.12 1.58 8.06 -52.49 -0.42 1.15 16 31 H 0.19 2.51 8.06 -52.48 -0.42 2.09 16 32 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 33 H 0.10 2.11 8.06 -52.48 -0.42 1.69 16 34 H 0.28 6.27 8.30 -40.82 -0.34 5.94 16 35 H 0.12 2.51 8.06 -52.49 -0.42 2.08 16 LS Contribution 307.25 15.07 4.63 4.63 Total: -1.00 -29.33 307.25 -9.58 -38.91 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -4.92 Total: 6.95 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: -5.46 Total: -22.28 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: 1.19 Total: -40.70 kcal Atomic # 14 Polarization: 17.52 SS G_CDS: -5.02 Total: 12.50 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.33 -9.58 -38.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241521500.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.281 kcal (2) G-P(sol) polarization free energy of solvation -29.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds