Wall clock time and date at job start Wed Apr 15 2020 11:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38807 * 119.37858 * 2 1 4 4 C 1.35959 * 122.66602 * 179.69693 * 3 2 1 5 5 C 1.41003 * 120.60927 * 0.57268 * 4 3 2 6 6 N 1.32165 * 134.66951 * 179.72003 * 5 4 3 7 7 N 1.39983 * 108.89420 * 180.02562 * 6 5 4 8 8 H 0.96998 * 125.06764 * 179.97438 * 7 6 5 9 9 C 1.34313 * 109.85701 * 359.97438 * 7 6 5 10 10 C 1.37578 * 107.92272 * 359.97438 * 9 7 6 11 11 C 1.38897 * 119.37130 * 180.26973 * 2 1 3 12 12 C 1.47282 * 120.74519 * 359.97438 * 11 2 1 13 13 C 1.40660 * 120.36883 * 294.71999 * 12 11 2 14 14 C 1.36415 * 118.59303 * 179.75151 * 13 12 11 15 15 C 1.41027 * 119.29028 * 0.48187 * 14 13 12 16 16 C 1.40726 * 119.65470 * 179.76289 * 15 14 13 17 17 H 1.07997 * 119.99699 * 0.02562 * 16 15 14 18 18 C 1.39956 * 119.99581 * 180.02562 * 16 15 14 19 19 N 1.30795 * 120.00195 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99726 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47279 * 89.99689 * 20 18 16 22 22 H 1.48496 * 109.47102 * 209.99880 * 20 18 16 23 23 H 1.48502 * 109.47046 * 330.00150 * 20 18 16 24 24 N 1.33884 * 120.68858 * 359.78291 * 15 14 13 25 25 C 1.31105 * 121.52282 * 359.97438 * 24 15 14 26 26 H 1.08999 * 109.47015 * 269.73255 * 1 2 3 27 27 H 1.09000 * 109.46646 * 29.72408 * 1 2 3 28 28 H 1.09000 * 109.47248 * 149.73125 * 1 2 3 29 29 H 1.08007 * 118.66355 * 359.97438 * 3 2 1 30 30 H 1.07996 * 119.69274 * 180.27809 * 4 3 2 31 31 H 1.08006 * 126.03942 * 179.97438 * 9 7 6 32 32 H 1.08004 * 120.70195 * 0.02562 * 13 12 11 33 33 H 1.08004 * 120.35799 * 180.24806 * 14 13 12 34 34 H 0.97001 * 119.99860 * 180.02562 * 19 18 16 35 35 H 1.07997 * 119.67952 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1880 1.2096 0.0000 4 6 3.5454 1.2875 0.0061 5 6 4.3318 0.1172 0.0006 6 7 5.6301 -0.1298 -0.0006 7 7 5.8279 -1.5156 -0.0076 8 1 6.6926 -1.9551 -0.0102 9 6 4.6418 -2.1457 -0.0104 10 6 3.6538 -1.1884 -0.0046 11 6 2.1883 -1.2104 -0.0057 12 6 1.4545 -2.4874 -0.0111 13 6 0.6606 -2.8561 1.0899 14 6 -0.0075 -4.0445 1.0443 15 6 0.1250 -4.8673 -0.0934 16 6 -0.5569 -6.0972 -0.1465 17 1 -1.1779 -6.4064 0.6811 18 6 -0.4300 -6.9195 -1.2719 19 7 0.3217 -6.5447 -2.2744 20 14 -1.3345 -8.5524 -1.3420 21 1 -2.6749 -8.3503 -1.9486 22 1 -0.5581 -9.5133 -2.1661 23 1 -1.4897 -9.0918 0.0328 24 7 0.8930 -4.4906 -1.1234 25 6 1.5442 -3.3528 -1.1127 26 1 -0.3633 -0.0048 1.0277 27 1 -0.3632 0.8925 -0.5096 28 1 -0.3634 -0.8876 -0.5180 29 1 1.6163 2.1259 -0.0004 30 1 4.0256 2.2548 0.0103 31 1 4.4904 -3.2151 -0.0161 32 1 0.5782 -2.2098 1.9513 33 1 -0.6283 -4.3539 1.8722 34 1 0.4093 -7.1145 -3.0545 35 1 2.1557 -3.0787 -1.9597 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241521500.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:38 Heat of formation + Delta-G solvation = 102.464210 kcal Electronic energy + Delta-G solvation = -20356.007314 eV Core-core repulsion = 17319.289251 eV Total energy + Delta-G solvation = -3036.718062 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.02424 -40.09721 -38.20299 -35.62776 -33.91169 -32.44213 -32.40650 -31.12720 -30.42502 -28.08394 -26.54382 -24.69738 -23.58045 -23.13922 -21.81818 -20.69157 -19.40183 -18.99942 -17.59493 -17.40279 -16.20715 -16.12684 -15.93610 -15.72785 -15.56170 -15.36407 -14.37701 -14.19737 -13.98426 -13.92813 -13.72437 -13.07572 -12.87413 -12.80364 -12.71428 -12.59229 -12.42053 -12.18288 -12.14968 -11.78831 -11.32744 -11.13495 -10.92288 -10.13778 -9.63815 -9.46554 -9.39599 -8.37249 -8.21846 -6.48793 -0.32836 0.80942 1.00022 1.23521 1.42509 1.46364 1.55692 1.59616 1.87804 2.22464 2.80283 2.93693 3.41341 3.79790 3.93519 4.15076 4.21307 4.24983 4.36080 4.46896 4.55825 4.64412 4.79336 4.88284 4.94546 4.96436 4.99645 5.18934 5.25294 5.34710 5.51998 5.54881 5.60546 5.73083 5.84826 6.00761 6.10376 6.15145 6.28426 6.30944 6.66360 6.71560 6.96345 8.19202 8.41468 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.025868 B = 0.004583 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.152091 B = 6108.134538 C = 6787.986855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.147 4.147 3 C -0.051 4.051 4 C -0.138 4.138 5 C 0.089 3.911 6 N -0.339 5.339 7 N -0.421 5.421 8 H 0.457 0.543 9 C 0.096 3.904 10 C -0.221 4.221 11 C 0.065 3.935 12 C -0.247 4.247 13 C -0.028 4.028 14 C -0.284 4.284 15 C 0.225 3.775 16 C -0.456 4.456 17 H 0.091 0.909 18 C 0.025 3.975 19 N -0.748 5.748 20 Si 0.986 3.014 21 H -0.263 1.263 22 H -0.269 1.269 23 H -0.254 1.254 24 N -0.519 5.519 25 C 0.136 3.864 26 H 0.067 0.933 27 H 0.079 0.921 28 H 0.041 0.959 29 H 0.155 0.845 30 H 0.142 0.858 31 H 0.197 0.803 32 H 0.118 0.882 33 H 0.110 0.890 34 H 0.280 0.720 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.225 7.615 3.136 9.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.149 4.149 3 C -0.073 4.073 4 C -0.159 4.159 5 C -0.064 4.064 6 N -0.168 5.168 7 N -0.124 5.124 8 H 0.304 0.696 9 C -0.061 4.061 10 C -0.231 4.231 11 C 0.062 3.938 12 C -0.252 4.252 13 C -0.052 4.052 14 C -0.306 4.306 15 C 0.101 3.899 16 C -0.486 4.486 17 H 0.109 0.891 18 C -0.198 4.198 19 N -0.370 5.370 20 Si 0.806 3.194 21 H -0.188 1.188 22 H -0.193 1.193 23 H -0.178 1.178 24 N -0.231 5.231 25 C -0.030 4.030 26 H 0.086 0.914 27 H 0.098 0.902 28 H 0.060 0.940 29 H 0.172 0.828 30 H 0.160 0.840 31 H 0.214 0.786 32 H 0.136 0.864 33 H 0.128 0.872 34 H 0.091 0.909 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.572 7.495 2.223 9.600 hybrid contribution -0.575 -0.937 0.535 1.222 sum 4.997 6.558 2.758 8.694 Atomic orbital electron populations 1.20610 0.90594 1.02023 1.01942 1.19948 0.96492 0.91825 1.06615 1.20627 0.93418 0.97734 0.95513 1.20004 0.92795 0.95184 1.07902 1.21245 0.90566 0.95397 0.99206 1.77503 1.15752 0.91305 1.32247 1.46262 1.08627 1.04665 1.52890 0.69577 1.22767 0.85148 0.99383 0.98753 1.20839 0.93982 0.92539 1.15759 1.19066 0.88438 0.92001 0.94340 1.19021 1.09804 0.97733 0.98691 1.20798 0.93273 0.94785 0.96318 1.21527 1.09259 0.98741 1.01076 1.19017 0.89890 0.93286 0.87744 1.19961 1.24175 1.01355 1.03119 0.89070 1.26991 0.95252 1.03310 0.94244 1.70254 1.26663 1.35868 1.04188 0.85153 0.78490 0.76026 0.79756 1.18798 1.19340 1.17772 1.68741 1.11148 1.15587 1.27645 1.22863 0.95026 0.89727 0.95359 0.91397 0.90184 0.94031 0.82774 0.84019 0.78631 0.86388 0.87193 0.90925 0.86131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.77 9.02 71.24 0.64 -2.12 16 2 C -0.15 -4.69 5.91 -19.57 -0.12 -4.81 16 3 C -0.05 -1.35 9.45 21.88 0.21 -1.14 16 4 C -0.14 -3.90 10.03 22.42 0.22 -3.68 16 5 C 0.09 2.96 7.49 42.10 0.32 3.28 16 6 N -0.34 -10.74 12.71 -48.76 -0.62 -11.36 16 7 N -0.42 -10.82 7.20 -56.57 -0.41 -11.23 16 8 H 0.46 7.73 8.96 -213.40 -1.91 5.82 16 9 C 0.10 2.84 12.01 84.16 1.01 3.85 16 10 C -0.22 -7.71 6.33 -18.93 -0.12 -7.83 16 11 C 0.06 2.39 5.50 -18.57 -0.10 2.28 16 12 C -0.25 -10.31 4.15 -19.79 -0.08 -10.39 16 13 C -0.03 -1.18 8.92 22.44 0.20 -0.98 16 14 C -0.28 -13.26 9.76 22.53 0.22 -13.04 16 15 C 0.22 11.95 6.54 40.12 0.26 12.21 16 16 C -0.46 -23.74 9.10 23.29 0.21 -23.53 16 17 H 0.09 4.41 7.85 -2.91 -0.02 4.39 16 18 C 0.02 1.21 5.49 85.26 0.47 1.68 16 19 N -0.75 -39.14 11.43 21.83 0.25 -38.89 16 20 Si 0.99 36.56 29.56 68.60 2.03 38.59 16 21 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 22 H -0.27 -9.57 7.11 99.48 0.71 -8.86 16 23 H -0.25 -9.04 7.11 99.48 0.71 -8.34 16 24 N -0.52 -27.91 7.82 -188.08 -1.47 -29.38 16 25 C 0.14 6.40 10.95 85.32 0.93 7.33 16 26 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.08 1.86 8.07 -2.39 -0.02 1.84 16 28 H 0.04 1.45 6.89 -2.39 -0.02 1.44 16 29 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 30 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 31 H 0.20 5.23 8.06 -2.91 -0.02 5.21 16 32 H 0.12 4.34 8.06 -2.91 -0.02 4.32 16 33 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 34 H 0.28 13.23 8.30 -92.71 -0.77 12.46 16 35 H 0.12 5.39 8.06 -2.91 -0.02 5.36 16 Total: -1.00 -64.91 307.25 3.28 -61.63 By element: Atomic # 1 Polarization: 28.29 SS G_CDS: -0.78 Total: 27.51 kcal Atomic # 6 Polarization: -41.15 SS G_CDS: 4.28 Total: -36.87 kcal Atomic # 7 Polarization: -88.61 SS G_CDS: -2.25 Total: -90.86 kcal Atomic # 14 Polarization: 36.56 SS G_CDS: 2.03 Total: 38.59 kcal Total: -64.91 3.28 -61.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241521500.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.094 kcal (2) G-P(sol) polarization free energy of solvation -64.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds