Wall clock time and date at job start Wed Apr 15 2020 11:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38768 * 119.37969 * 2 1 4 4 C 1.35988 * 122.66972 * 179.97438 * 3 2 1 5 5 C 1.40997 * 120.62935 * 0.04072 * 4 3 2 6 6 N 1.32170 * 134.66611 * 180.02562 * 5 4 3 7 7 N 1.39983 * 108.88854 * 179.90436 * 6 5 4 8 8 H 0.97007 * 125.07475 * 180.02562 * 7 6 5 9 9 C 1.34342 * 109.85562 * 359.78815 * 7 6 5 10 10 C 1.37550 * 107.91676 * 0.33948 * 9 7 6 11 11 C 1.38988 * 119.37655 * 179.97438 * 2 1 3 12 12 C 1.47103 * 120.75427 * 359.97438 * 11 2 1 13 13 C 1.40175 * 120.93645 * 270.02219 * 12 11 2 14 14 C 1.38059 * 118.42842 * 179.97438 * 13 12 11 15 15 C 1.38979 * 120.36341 * 0.02562 * 14 13 12 16 16 N 1.31146 * 122.06052 * 0.02562 * 15 14 13 17 17 C 1.33910 * 121.58672 * 359.64941 * 16 15 14 18 18 C 1.40517 * 120.28035 * 180.33446 * 17 16 15 19 19 H 1.08005 * 119.99828 * 174.00092 * 18 17 16 20 20 C 1.40012 * 120.00524 * 354.00623 * 18 17 16 21 21 N 1.30777 * 119.99642 * 6.32065 * 20 18 17 22 22 Si 1.86794 * 120.00223 * 186.32908 * 20 18 17 23 23 H 1.48508 * 109.47350 * 94.97972 * 22 20 18 24 24 H 1.48501 * 109.47257 * 214.97912 * 22 20 18 25 25 H 1.48502 * 109.47301 * 334.98436 * 22 20 18 26 26 H 1.09002 * 109.46749 * 270.02885 * 1 2 3 27 27 H 1.09004 * 109.46758 * 30.02449 * 1 2 3 28 28 H 1.08995 * 109.46983 * 150.02659 * 1 2 3 29 29 H 1.08001 * 118.66732 * 359.97438 * 3 2 1 30 30 H 1.07997 * 119.68670 * 180.02562 * 4 3 2 31 31 H 1.07994 * 126.03777 * 180.26515 * 9 7 6 32 32 H 1.08008 * 120.78130 * 359.97438 * 13 12 11 33 33 H 1.07995 * 119.81972 * 179.97438 * 14 13 12 34 34 H 1.07995 * 118.97008 * 180.02562 * 15 14 13 35 35 H 0.97004 * 120.00014 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1878 1.2092 0.0000 4 6 3.5455 1.2872 0.0005 5 6 4.3323 0.1172 0.0002 6 7 5.6308 -0.1292 0.0010 7 7 5.8291 -1.5150 0.0023 8 1 6.6939 -1.9543 0.0034 9 6 4.6429 -2.1456 0.0070 10 6 3.6548 -1.1886 0.0011 11 6 2.1889 -1.2112 0.0005 12 6 1.4563 -2.4868 0.0017 13 6 1.0974 -3.1106 1.2046 14 6 0.4101 -4.3065 1.1452 15 6 0.0866 -4.8707 -0.0830 16 7 0.4148 -4.3021 -1.2183 17 6 1.0764 -3.1383 -1.2545 18 6 1.4081 -2.5499 -2.4867 19 1 1.8546 -1.5668 -2.5128 20 6 1.1599 -3.2379 -3.6805 21 7 0.5084 -4.3716 -3.6585 22 14 1.7595 -2.5367 -5.3047 23 1 3.0748 -3.1353 -5.6470 24 1 0.7783 -2.8539 -6.3733 25 1 1.9024 -1.0634 -5.1852 26 1 -0.3633 0.0005 1.0277 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3633 -0.8902 -0.5134 29 1 1.6163 2.1256 -0.0004 30 1 4.0256 2.2546 0.0009 31 1 4.4918 -3.2149 0.0131 32 1 1.3527 -2.6663 2.1553 33 1 0.1228 -4.8067 2.0582 34 1 -0.4519 -5.8066 -0.1032 35 1 0.3360 -4.8482 -4.4857 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241522732.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:41 Heat of formation + Delta-G solvation = 119.856555 kcal Electronic energy + Delta-G solvation = -21037.282499 eV Core-core repulsion = 18001.318625 eV Total energy + Delta-G solvation = -3035.963874 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.62265 -38.10799 -36.64068 -33.75212 -32.60696 -31.02919 -30.29763 -29.62731 -28.70021 -26.19569 -25.28436 -23.41320 -21.75501 -21.29216 -20.42336 -19.05227 -17.67904 -17.51866 -16.15298 -15.61300 -14.77863 -14.50505 -14.45157 -14.16557 -14.07981 -13.80704 -12.75759 -12.72659 -12.57021 -12.10411 -11.92353 -11.57329 -11.29965 -11.23669 -11.15412 -11.05571 -10.83553 -10.79138 -10.54519 -10.16195 -9.79363 -9.49713 -9.33724 -8.24713 -8.17578 -7.66292 -7.49950 -6.86420 -6.50843 -4.61903 1.10810 2.42284 2.58094 2.90462 2.91735 3.03037 3.08397 3.11030 3.18249 3.86157 4.33638 4.64086 4.78956 5.14956 5.52653 5.59025 5.73168 5.81405 5.92318 6.06193 6.06740 6.12469 6.22504 6.27418 6.35364 6.53122 6.69844 6.75853 6.81230 6.95312 6.99336 7.05061 7.26602 7.41623 7.45172 7.49291 7.53566 7.72662 7.96845 8.05044 8.17910 8.52144 8.84654 10.00378 10.16501 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.013068 B = 0.008117 C = 0.006770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.092466 B = 3448.517301 C = 4135.183453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.147 4.147 3 C -0.049 4.049 4 C -0.141 4.141 5 C 0.108 3.892 6 N -0.326 5.326 7 N -0.444 5.444 8 H 0.437 0.563 9 C 0.095 3.905 10 C -0.189 4.189 11 C 0.117 3.883 12 C -0.244 4.244 13 C -0.030 4.030 14 C -0.328 4.328 15 C 0.134 3.866 16 N -0.490 5.490 17 C 0.275 3.725 18 C -0.405 4.405 19 H 0.088 0.912 20 C 0.069 3.931 21 N -0.705 5.705 22 Si 0.903 3.097 23 H -0.269 1.269 24 H -0.274 1.274 25 H -0.258 1.258 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.073 0.927 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.183 0.817 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.115 0.885 35 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.942 3.935 3.937 6.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.149 4.149 3 C -0.072 4.072 4 C -0.163 4.163 5 C -0.046 4.046 6 N -0.155 5.155 7 N -0.145 5.145 8 H 0.280 0.720 9 C -0.060 4.060 10 C -0.199 4.199 11 C 0.113 3.887 12 C -0.249 4.249 13 C -0.054 4.054 14 C -0.351 4.351 15 C -0.033 4.033 16 N -0.202 5.202 17 C 0.151 3.849 18 C -0.435 4.435 19 H 0.106 0.894 20 C -0.158 4.158 21 N -0.326 5.326 22 Si 0.727 3.273 23 H -0.194 1.194 24 H -0.199 1.199 25 H -0.181 1.181 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.092 0.908 29 H 0.135 0.865 30 H 0.135 0.865 31 H 0.200 0.800 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.132 0.868 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.840 3.928 2.956 6.899 hybrid contribution 0.220 -0.117 0.123 0.278 sum 5.060 3.811 3.079 7.043 Atomic orbital electron populations 1.20580 0.91394 1.02451 1.00903 1.19673 0.95859 0.91542 1.07810 1.20329 0.93384 0.97237 0.96229 1.19578 0.92462 0.94616 1.09604 1.20857 0.90313 0.94839 0.98557 1.77551 1.15864 0.89926 1.32130 1.46260 1.07902 1.05507 1.54781 0.71952 1.22523 0.85079 0.98942 0.99464 1.20654 0.93985 0.91348 1.13906 1.18903 0.87741 0.92193 0.89824 1.20212 1.12541 0.97865 0.94261 1.20767 0.95237 0.94107 0.95262 1.20984 1.15137 1.01304 0.97711 1.22454 0.94636 0.97292 0.88874 1.68821 1.15473 1.10568 1.25296 1.19625 0.87692 0.87453 0.90144 1.19518 1.32166 1.02583 0.89263 0.89427 1.26117 0.93921 0.94588 1.01212 1.70152 1.23099 1.10601 1.28700 0.86354 0.79349 0.80921 0.80700 1.19397 1.19865 1.18124 0.92786 0.92953 0.90758 0.86507 0.86518 0.80014 0.88867 0.89025 0.86792 0.91353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.71 9.59 36.01 0.35 -1.36 16 2 C -0.15 -2.80 5.92 -104.15 -0.62 -3.42 16 3 C -0.05 -0.82 9.45 -40.19 -0.38 -1.20 16 4 C -0.14 -2.43 10.03 -39.34 -0.39 -2.82 16 5 C 0.11 2.07 7.49 -83.08 -0.62 1.45 16 6 N -0.33 -5.91 12.71 33.24 0.42 -5.49 16 7 N -0.44 -6.66 7.21 30.76 0.22 -6.44 16 8 H 0.44 4.61 8.96 -182.68 -1.64 2.97 16 9 C 0.09 1.61 12.01 -16.70 -0.20 1.41 16 10 C -0.19 -3.75 6.35 -103.17 -0.65 -4.40 16 11 C 0.12 2.43 4.31 -102.65 -0.44 1.99 16 12 C -0.24 -5.48 4.06 -102.24 -0.41 -5.89 16 13 C -0.03 -0.64 9.94 -38.92 -0.39 -1.02 16 14 C -0.33 -6.97 10.05 -39.37 -0.40 -7.36 16 15 C 0.13 3.09 11.12 -17.57 -0.20 2.90 16 16 N -0.49 -12.74 7.91 -9.71 -0.08 -12.82 16 17 C 0.28 6.98 6.46 -82.76 -0.53 6.45 16 18 C -0.41 -10.31 8.82 -38.06 -0.34 -10.65 16 19 H 0.09 2.22 7.02 -52.48 -0.37 1.85 16 20 C 0.07 1.67 5.49 -17.34 -0.10 1.58 16 21 N -0.71 -17.89 11.50 55.55 0.64 -17.25 16 22 Si 0.90 18.34 29.56 -169.99 -5.03 13.31 16 23 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 24 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 25 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.05 0.80 8.07 -51.93 -0.42 0.38 16 28 H 0.07 1.53 6.84 -51.93 -0.36 1.18 16 29 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 30 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 31 H 0.18 2.75 8.06 -52.49 -0.42 2.32 16 32 H 0.09 1.81 8.06 -52.48 -0.42 1.38 16 33 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 34 H 0.11 2.35 8.06 -52.49 -0.42 1.92 16 35 H 0.28 6.33 8.30 -40.82 -0.34 5.99 16 LS Contribution 306.95 15.07 4.63 4.63 Total: -1.00 -29.69 306.95 -9.39 -39.08 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -4.87 Total: 7.33 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: -5.32 Total: -22.37 kcal Atomic # 7 Polarization: -43.19 SS G_CDS: 1.21 Total: -41.99 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -5.03 Total: 13.31 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.69 -9.39 -39.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241522732.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.940 kcal (2) G-P(sol) polarization free energy of solvation -29.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds