Wall clock time and date at job start Wed Apr 15 2020 11:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38768 * 119.37969 * 2 1 4 4 C 1.35988 * 122.66972 * 179.97438 * 3 2 1 5 5 C 1.40997 * 120.62935 * 0.04072 * 4 3 2 6 6 N 1.32170 * 134.66611 * 180.02562 * 5 4 3 7 7 N 1.39983 * 108.88854 * 179.90436 * 6 5 4 8 8 H 0.97007 * 125.07475 * 180.02562 * 7 6 5 9 9 C 1.34342 * 109.85562 * 359.78815 * 7 6 5 10 10 C 1.37550 * 107.91676 * 0.33948 * 9 7 6 11 11 C 1.38988 * 119.37655 * 179.97438 * 2 1 3 12 12 C 1.47103 * 120.75427 * 359.97438 * 11 2 1 13 13 C 1.40175 * 120.93645 * 270.02219 * 12 11 2 14 14 C 1.38059 * 118.42842 * 179.97438 * 13 12 11 15 15 C 1.38979 * 120.36341 * 0.02562 * 14 13 12 16 16 N 1.31146 * 122.06052 * 0.02562 * 15 14 13 17 17 C 1.33910 * 121.58672 * 359.64941 * 16 15 14 18 18 C 1.40517 * 120.28035 * 180.33446 * 17 16 15 19 19 H 1.08005 * 119.99828 * 174.00092 * 18 17 16 20 20 C 1.40012 * 120.00524 * 354.00623 * 18 17 16 21 21 N 1.30777 * 119.99642 * 6.32065 * 20 18 17 22 22 Si 1.86794 * 120.00223 * 186.32908 * 20 18 17 23 23 H 1.48508 * 109.47350 * 94.97972 * 22 20 18 24 24 H 1.48501 * 109.47257 * 214.97912 * 22 20 18 25 25 H 1.48502 * 109.47301 * 334.98436 * 22 20 18 26 26 H 1.09002 * 109.46749 * 270.02885 * 1 2 3 27 27 H 1.09004 * 109.46758 * 30.02449 * 1 2 3 28 28 H 1.08995 * 109.46983 * 150.02659 * 1 2 3 29 29 H 1.08001 * 118.66732 * 359.97438 * 3 2 1 30 30 H 1.07997 * 119.68670 * 180.02562 * 4 3 2 31 31 H 1.07994 * 126.03777 * 180.26515 * 9 7 6 32 32 H 1.08008 * 120.78130 * 359.97438 * 13 12 11 33 33 H 1.07995 * 119.81972 * 179.97438 * 14 13 12 34 34 H 1.07995 * 118.97008 * 180.02562 * 15 14 13 35 35 H 0.97004 * 120.00014 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1878 1.2092 0.0000 4 6 3.5455 1.2872 0.0005 5 6 4.3323 0.1172 0.0002 6 7 5.6308 -0.1292 0.0010 7 7 5.8291 -1.5150 0.0023 8 1 6.6939 -1.9543 0.0034 9 6 4.6429 -2.1456 0.0070 10 6 3.6548 -1.1886 0.0011 11 6 2.1889 -1.2112 0.0005 12 6 1.4563 -2.4868 0.0017 13 6 1.0974 -3.1106 1.2046 14 6 0.4101 -4.3065 1.1452 15 6 0.0866 -4.8707 -0.0830 16 7 0.4148 -4.3021 -1.2183 17 6 1.0764 -3.1383 -1.2545 18 6 1.4081 -2.5499 -2.4867 19 1 1.8546 -1.5668 -2.5128 20 6 1.1599 -3.2379 -3.6805 21 7 0.5084 -4.3716 -3.6585 22 14 1.7595 -2.5367 -5.3047 23 1 3.0748 -3.1353 -5.6470 24 1 0.7783 -2.8539 -6.3733 25 1 1.9024 -1.0634 -5.1852 26 1 -0.3633 0.0005 1.0277 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3633 -0.8902 -0.5134 29 1 1.6163 2.1256 -0.0004 30 1 4.0256 2.2546 0.0009 31 1 4.4918 -3.2149 0.0131 32 1 1.3527 -2.6663 2.1553 33 1 0.1228 -4.8067 2.0582 34 1 -0.4519 -5.8066 -0.1032 35 1 0.3360 -4.8482 -4.4857 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241522732.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:40 Heat of formation + Delta-G solvation = 103.639435 kcal Electronic energy + Delta-G solvation = -21037.985726 eV Core-core repulsion = 18001.318625 eV Total energy + Delta-G solvation = -3036.667101 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.97546 -39.81899 -38.07903 -35.54658 -34.08524 -32.51798 -32.03086 -31.04981 -30.22639 -27.84614 -26.87247 -24.81621 -23.37445 -23.04746 -21.80194 -20.53912 -19.33230 -18.98349 -17.61881 -17.30905 -16.21309 -16.09682 -16.04462 -15.60576 -15.60038 -15.32242 -14.39432 -14.12889 -13.93957 -13.84814 -13.58027 -13.07334 -12.89986 -12.86484 -12.72969 -12.58608 -12.37133 -12.17568 -12.11349 -11.81928 -11.25476 -11.23798 -10.80178 -10.02087 -9.55871 -9.40268 -9.28591 -8.41839 -8.16435 -6.46608 -0.25686 0.83256 1.01758 1.20455 1.37055 1.49352 1.51641 1.51939 1.90480 2.18718 2.83779 2.93112 3.44690 3.82797 3.92013 4.18486 4.24357 4.36205 4.40680 4.49973 4.58405 4.69581 4.81236 4.87557 4.93518 4.95989 5.02075 5.18008 5.31296 5.36368 5.48140 5.62960 5.66635 5.75980 5.94544 6.00148 6.11899 6.20172 6.33471 6.34270 6.69011 6.71937 7.02785 8.22077 8.39955 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.013068 B = 0.008117 C = 0.006770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.092466 B = 3448.517301 C = 4135.183453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.150 4.150 3 C -0.052 4.052 4 C -0.139 4.139 5 C 0.088 3.912 6 N -0.338 5.338 7 N -0.421 5.421 8 H 0.457 0.543 9 C 0.097 3.903 10 C -0.218 4.218 11 C 0.080 3.920 12 C -0.227 4.227 13 C -0.041 4.041 14 C -0.314 4.314 15 C 0.111 3.889 16 N -0.526 5.526 17 C 0.251 3.749 18 C -0.433 4.433 19 H 0.078 0.922 20 C 0.032 3.968 21 N -0.744 5.744 22 Si 0.969 3.031 23 H -0.265 1.265 24 H -0.263 1.263 25 H -0.261 1.261 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.036 0.964 29 H 0.154 0.846 30 H 0.143 0.857 31 H 0.196 0.804 32 H 0.115 0.885 33 H 0.121 0.879 34 H 0.131 0.869 35 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.739 5.261 4.543 8.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.152 4.152 3 C -0.074 4.074 4 C -0.160 4.160 5 C -0.065 4.065 6 N -0.167 5.167 7 N -0.124 5.124 8 H 0.304 0.696 9 C -0.059 4.059 10 C -0.228 4.228 11 C 0.077 3.923 12 C -0.232 4.232 13 C -0.065 4.065 14 C -0.337 4.337 15 C -0.054 4.054 16 N -0.238 5.238 17 C 0.126 3.874 18 C -0.464 4.464 19 H 0.096 0.904 20 C -0.192 4.192 21 N -0.365 5.365 22 Si 0.790 3.210 23 H -0.190 1.190 24 H -0.187 1.187 25 H -0.184 1.184 26 H 0.086 0.914 27 H 0.095 0.905 28 H 0.056 0.944 29 H 0.171 0.829 30 H 0.161 0.839 31 H 0.213 0.787 32 H 0.133 0.867 33 H 0.139 0.861 34 H 0.149 0.851 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.653 5.235 3.593 8.501 hybrid contribution 0.007 -0.521 0.112 0.533 sum 5.659 4.714 3.705 8.245 Atomic orbital electron populations 1.20541 0.90901 1.01808 1.01558 1.19969 0.96438 0.92017 1.06726 1.20617 0.93537 0.97634 0.95639 1.19984 0.92690 0.95217 1.08100 1.21227 0.90626 0.95359 0.99278 1.77472 1.15565 0.91298 1.32395 1.46231 1.08503 1.04649 1.53054 0.69598 1.22706 0.85157 0.99312 0.98755 1.20865 0.94005 0.92617 1.15312 1.18947 0.88496 0.92027 0.92820 1.20363 1.11056 0.98191 0.93610 1.21085 0.95241 0.94274 0.95899 1.21298 1.13347 1.00934 0.98170 1.22829 0.95312 0.98200 0.89056 1.68743 1.16614 1.11478 1.26995 1.19942 0.88147 0.87838 0.91437 1.19568 1.33872 1.02662 0.90280 0.90380 1.26827 0.93664 0.94692 1.03983 1.70219 1.24626 1.11916 1.29778 0.85383 0.79005 0.79755 0.76896 1.19007 1.18717 1.18439 0.91391 0.90459 0.94445 0.82876 0.83932 0.78707 0.86726 0.86118 0.85124 0.90845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.15 9.59 71.24 0.68 -2.47 16 2 C -0.15 -5.55 5.92 -19.56 -0.12 -5.67 16 3 C -0.05 -1.61 9.45 21.87 0.21 -1.41 16 4 C -0.14 -4.45 10.03 22.42 0.22 -4.23 16 5 C 0.09 3.25 7.49 42.10 0.32 3.57 16 6 N -0.34 -11.67 12.71 -48.76 -0.62 -12.29 16 7 N -0.42 -11.95 7.21 -56.58 -0.41 -12.35 16 8 H 0.46 8.69 8.96 -213.39 -1.91 6.78 16 9 C 0.10 3.21 12.01 84.15 1.01 4.22 16 10 C -0.22 -8.51 6.35 -18.92 -0.12 -8.63 16 11 C 0.08 3.33 4.31 -18.58 -0.08 3.25 16 12 C -0.23 -10.30 4.06 -18.32 -0.07 -10.38 16 13 C -0.04 -1.72 9.94 22.70 0.23 -1.50 16 14 C -0.31 -13.03 10.05 22.41 0.23 -12.81 16 15 C 0.11 5.12 11.12 84.97 0.94 6.07 16 16 N -0.53 -28.09 7.91 -184.64 -1.46 -29.55 16 17 C 0.25 13.12 6.46 41.54 0.27 13.39 16 18 C -0.43 -22.74 8.82 23.26 0.21 -22.54 16 19 H 0.08 4.10 7.02 -2.91 -0.02 4.08 16 20 C 0.03 1.58 5.49 85.28 0.47 2.04 16 21 N -0.74 -38.85 11.50 21.84 0.25 -38.60 16 22 Si 0.97 38.22 29.56 68.60 2.03 40.25 16 23 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 24 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 25 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 26 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.08 2.22 8.07 -2.39 -0.02 2.20 16 28 H 0.04 1.56 6.84 -2.39 -0.02 1.54 16 29 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 30 H 0.14 3.74 8.06 -2.91 -0.02 3.71 16 31 H 0.20 5.77 8.06 -2.91 -0.02 5.74 16 32 H 0.11 4.25 8.06 -2.91 -0.02 4.23 16 33 H 0.12 4.24 8.06 -2.91 -0.02 4.21 16 34 H 0.13 5.40 8.06 -2.91 -0.02 5.37 16 35 H 0.28 13.26 8.30 -92.70 -0.77 12.49 16 Total: -1.00 -65.16 306.95 3.40 -61.76 By element: Atomic # 1 Polarization: 28.65 SS G_CDS: -0.78 Total: 27.87 kcal Atomic # 6 Polarization: -41.47 SS G_CDS: 4.39 Total: -37.08 kcal Atomic # 7 Polarization: -90.56 SS G_CDS: -2.24 Total: -92.79 kcal Atomic # 14 Polarization: 38.22 SS G_CDS: 2.03 Total: 40.25 kcal Total: -65.16 3.40 -61.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241522732.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.396 kcal (2) G-P(sol) polarization free energy of solvation -65.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds