Wall clock time and date at job start Wed Apr 15 2020 11:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39229 * 119.33582 * 2 1 4 4 C 1.35609 * 122.63012 * 179.97438 * 3 2 1 5 5 C 1.41071 * 120.52473 * 359.97438 * 4 3 2 6 6 N 1.32108 * 134.72397 * 179.97438 * 5 4 3 7 7 N 1.39980 * 108.92311 * 180.02562 * 6 5 4 8 8 H 0.96998 * 125.04922 * 180.02562 * 7 6 5 9 9 C 1.34138 * 109.89551 * 0.02562 * 7 6 5 10 10 C 1.37745 * 107.91501 * 359.73155 * 9 7 6 11 11 C 1.38095 * 119.33498 * 179.97438 * 2 1 3 12 12 C 1.48042 * 120.71202 * 359.97438 * 11 2 1 13 13 C 1.40205 * 120.83604 * 115.00050 * 12 11 2 14 14 C 1.38421 * 119.40764 * 179.73179 * 13 12 11 15 15 N 1.31515 * 121.16855 * 0.02562 * 14 13 12 16 16 C 1.33656 * 121.83818 * 359.97438 * 15 14 13 17 17 C 1.41425 * 119.78001 * 180.02562 * 16 15 14 18 18 H 1.07998 * 120.00469 * 180.02562 * 17 16 15 19 19 C 1.40039 * 119.99383 * 0.02562 * 17 16 15 20 20 N 1.30741 * 120.00112 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99905 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47164 * 89.99791 * 21 19 17 23 23 H 1.48504 * 109.47312 * 210.00504 * 21 19 17 24 24 H 1.48502 * 109.47020 * 330.00232 * 21 19 17 25 25 C 1.39504 * 120.84043 * 294.72271 * 12 11 2 26 26 H 1.09004 * 109.46926 * 270.02736 * 1 2 3 27 27 H 1.09002 * 109.47054 * 30.02090 * 1 2 3 28 28 H 1.08994 * 109.47358 * 150.02335 * 1 2 3 29 29 H 1.07998 * 118.68834 * 0.02562 * 3 2 1 30 30 H 1.08006 * 119.73265 * 180.02562 * 4 3 2 31 31 H 1.08000 * 126.03832 * 180.02562 * 9 7 6 32 32 H 1.07998 * 120.29366 * 359.75013 * 13 12 11 33 33 H 1.08002 * 119.41107 * 180.02562 * 14 13 12 34 34 H 0.96995 * 119.99478 * 179.97438 * 20 19 17 35 35 H 1.08008 * 120.59031 * 0.27575 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1891 1.2137 0.0000 4 6 3.5429 1.2917 0.0005 5 6 4.3281 0.1197 0.0016 6 7 5.6253 -0.1303 0.0019 7 7 5.8206 -1.5164 0.0026 8 1 6.6846 -1.9572 0.0033 9 6 4.6353 -2.1443 0.0022 10 6 3.6473 -1.1845 0.0073 11 6 2.1835 -1.2039 0.0005 12 6 1.4443 -2.4866 0.0017 13 6 1.5259 -3.3640 -1.0888 14 6 0.8268 -4.5582 -1.0541 15 7 0.0872 -4.8840 -0.0166 16 6 -0.0250 -4.0842 1.0483 17 6 -0.8322 -4.4781 2.1407 18 1 -0.9258 -3.8345 3.0029 19 6 -1.5101 -5.7030 2.1044 20 7 -1.3964 -6.4824 1.0609 21 14 -2.5758 -6.2238 3.5476 22 1 -3.9621 -5.7333 3.3416 23 1 -2.5845 -7.7055 3.6472 24 1 -2.0277 -5.6467 4.8013 25 6 0.6537 -2.8554 1.0902 26 1 -0.3633 0.0005 1.0277 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3634 -0.8901 -0.5134 29 1 1.6172 2.1299 0.0004 30 1 4.0238 2.2588 0.0009 31 1 4.4826 -3.2135 0.0029 32 1 2.1291 -3.1105 -1.9481 33 1 0.8900 -5.2343 -1.8939 34 1 -1.8657 -7.3309 1.0360 35 1 0.5646 -2.2072 1.9496 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241523807.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:45 Heat of formation + Delta-G solvation = 120.151645 kcal Electronic energy + Delta-G solvation = -20389.969141 eV Core-core repulsion = 17354.018064 eV Total energy + Delta-G solvation = -3035.951078 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.92706 -38.38636 -36.99006 -33.79598 -32.79146 -31.25856 -30.15783 -29.80514 -28.97678 -26.08174 -25.67537 -23.64716 -21.97125 -21.28507 -20.69238 -19.55622 -17.93933 -17.33209 -16.13730 -15.43733 -14.98341 -14.70566 -14.53822 -14.44615 -14.13697 -13.94006 -13.01566 -12.91821 -12.65784 -12.29094 -12.17570 -11.72528 -11.48970 -11.28659 -11.20974 -11.15083 -11.02458 -10.82082 -10.53074 -10.12695 -10.03024 -9.63501 -9.38745 -8.49165 -8.12126 -7.69589 -7.60029 -7.13947 -6.43476 -4.56277 0.81429 2.11873 2.51744 2.72460 2.83742 2.95749 3.07119 3.09863 3.16708 3.92004 4.06887 4.50767 4.70710 4.88007 5.25477 5.30002 5.50640 5.61937 5.69944 5.86338 5.89035 6.02334 6.04590 6.17959 6.33019 6.47205 6.54775 6.67837 6.70494 6.71848 6.82103 7.05897 7.11928 7.13474 7.23848 7.30044 7.49919 7.66150 7.77851 7.96069 8.19226 8.61549 8.87743 10.07659 10.28201 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.023959 B = 0.004668 C = 0.004373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.387484 B = 5997.388994 C = 6401.399362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.130 4.130 3 C -0.055 4.055 4 C -0.126 4.126 5 C 0.106 3.894 6 N -0.319 5.319 7 N -0.439 5.439 8 H 0.440 0.560 9 C 0.093 3.907 10 C -0.191 4.191 11 C 0.061 3.939 12 C 0.001 3.999 13 C -0.302 4.302 14 C 0.124 3.876 15 N -0.483 5.483 16 C 0.255 3.745 17 C -0.431 4.431 18 H 0.083 0.917 19 C 0.070 3.930 20 N -0.715 5.715 21 Si 0.905 3.095 22 H -0.268 1.268 23 H -0.276 1.276 24 H -0.262 1.262 25 C -0.245 4.245 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.187 0.813 32 H 0.093 0.907 33 H 0.118 0.882 34 H 0.273 0.727 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.593 7.226 -1.500 9.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.132 4.132 3 C -0.078 4.078 4 C -0.147 4.147 5 C -0.048 4.048 6 N -0.147 5.147 7 N -0.140 5.140 8 H 0.284 0.716 9 C -0.062 4.062 10 C -0.201 4.201 11 C 0.058 3.942 12 C -0.005 4.005 13 C -0.325 4.325 14 C -0.041 4.041 15 N -0.196 5.196 16 C 0.131 3.869 17 C -0.463 4.463 18 H 0.101 0.899 19 C -0.155 4.155 20 N -0.337 5.337 21 Si 0.730 3.270 22 H -0.194 1.194 23 H -0.201 1.201 24 H -0.185 1.185 25 C -0.268 4.268 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.140 0.860 30 H 0.140 0.860 31 H 0.204 0.796 32 H 0.111 0.889 33 H 0.136 0.864 34 H 0.084 0.916 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 7.260 6.760 -1.547 10.040 hybrid contribution -0.203 -0.126 0.553 0.603 sum 7.056 6.634 -0.994 9.736 Atomic orbital electron populations 1.20700 0.90859 1.02300 1.02147 1.19567 0.96136 0.91423 1.06042 1.20383 0.93474 0.97286 0.96642 1.19631 0.92516 0.94836 1.07725 1.20874 0.90344 0.94748 0.98822 1.77564 1.15823 0.89971 1.31354 1.46227 1.08064 1.05465 1.54221 0.71628 1.22613 0.85033 0.99119 0.99437 1.20461 0.93421 0.91658 1.14513 1.19247 0.88528 0.92725 0.93694 1.18480 0.95684 0.91371 0.94975 1.21267 1.12126 0.99064 1.00062 1.22425 0.92297 0.93039 0.96356 1.68734 1.18470 1.32285 1.00091 1.18526 0.90000 0.87138 0.91262 1.19626 1.22691 1.02375 1.01560 0.89858 1.26054 0.96482 0.96345 0.96664 1.70131 1.29795 1.07614 1.26130 0.86360 0.80500 0.78325 0.81863 1.19360 1.20130 1.18546 1.21811 1.05638 1.00479 0.98906 0.91590 0.92644 0.90974 0.85965 0.86029 0.79581 0.88863 0.86425 0.91620 0.88193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.64 9.02 36.00 0.32 -1.32 16 2 C -0.13 -2.21 5.90 -104.31 -0.62 -2.82 16 3 C -0.06 -0.80 9.45 -40.15 -0.38 -1.18 16 4 C -0.13 -1.89 10.02 -39.45 -0.40 -2.28 16 5 C 0.11 1.81 7.50 -83.07 -0.62 1.19 16 6 N -0.32 -5.13 12.71 33.24 0.42 -4.71 16 7 N -0.44 -5.69 7.19 30.77 0.22 -5.47 16 8 H 0.44 3.79 8.96 -182.69 -1.64 2.15 16 9 C 0.09 1.37 12.01 -16.72 -0.20 1.17 16 10 C -0.19 -3.36 6.34 -103.19 -0.65 -4.01 16 11 C 0.06 1.15 5.54 -102.65 -0.57 0.58 16 12 C 0.00 0.03 4.12 -104.67 -0.43 -0.41 16 13 C -0.30 -6.41 9.89 -38.78 -0.38 -6.80 16 14 C 0.12 2.86 11.16 -17.62 -0.20 2.67 16 15 N -0.48 -12.78 7.85 -11.22 -0.09 -12.87 16 16 C 0.26 6.69 6.55 -85.03 -0.56 6.13 16 17 C -0.43 -11.18 9.14 -37.69 -0.34 -11.53 16 18 H 0.08 2.03 7.85 -52.49 -0.41 1.62 16 19 C 0.07 1.73 5.50 -17.34 -0.10 1.64 16 20 N -0.72 -18.58 11.46 55.55 0.64 -17.94 16 21 Si 0.91 18.15 29.56 -169.99 -5.02 13.13 16 22 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 23 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 24 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 25 C -0.25 -5.73 8.68 -38.28 -0.33 -6.07 16 26 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.05 0.72 8.07 -51.93 -0.42 0.30 16 28 H 0.07 1.32 6.86 -51.93 -0.36 0.96 16 29 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 30 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 31 H 0.19 2.38 8.06 -52.49 -0.42 1.96 16 32 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 33 H 0.12 2.42 8.06 -52.49 -0.42 2.00 16 34 H 0.27 6.42 8.29 -40.82 -0.34 6.08 16 35 H 0.10 2.25 8.06 -52.48 -0.42 1.83 16 LS Contribution 307.44 15.07 4.63 4.63 Total: -1.00 -30.47 307.44 -9.57 -40.04 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -4.92 Total: 6.24 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: -5.45 Total: -23.05 kcal Atomic # 7 Polarization: -42.18 SS G_CDS: 1.19 Total: -40.99 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -5.02 Total: 13.13 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.47 -9.57 -40.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241523807.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.188 kcal (2) G-P(sol) polarization free energy of solvation -30.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds