Wall clock time and date at job start Wed Apr 15 2020 11:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39229 * 119.33582 * 2 1 4 4 C 1.35609 * 122.63012 * 179.97438 * 3 2 1 5 5 C 1.41071 * 120.52473 * 359.97438 * 4 3 2 6 6 N 1.32108 * 134.72397 * 179.97438 * 5 4 3 7 7 N 1.39980 * 108.92311 * 180.02562 * 6 5 4 8 8 H 0.96998 * 125.04922 * 180.02562 * 7 6 5 9 9 C 1.34138 * 109.89551 * 0.02562 * 7 6 5 10 10 C 1.37745 * 107.91501 * 359.73155 * 9 7 6 11 11 C 1.38095 * 119.33498 * 179.97438 * 2 1 3 12 12 C 1.48042 * 120.71202 * 359.97438 * 11 2 1 13 13 C 1.40205 * 120.83604 * 115.00050 * 12 11 2 14 14 C 1.38421 * 119.40764 * 179.73179 * 13 12 11 15 15 N 1.31515 * 121.16855 * 0.02562 * 14 13 12 16 16 C 1.33656 * 121.83818 * 359.97438 * 15 14 13 17 17 C 1.41425 * 119.78001 * 180.02562 * 16 15 14 18 18 H 1.07998 * 120.00469 * 180.02562 * 17 16 15 19 19 C 1.40039 * 119.99383 * 0.02562 * 17 16 15 20 20 N 1.30741 * 120.00112 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99905 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47164 * 89.99791 * 21 19 17 23 23 H 1.48504 * 109.47312 * 210.00504 * 21 19 17 24 24 H 1.48502 * 109.47020 * 330.00232 * 21 19 17 25 25 C 1.39504 * 120.84043 * 294.72271 * 12 11 2 26 26 H 1.09004 * 109.46926 * 270.02736 * 1 2 3 27 27 H 1.09002 * 109.47054 * 30.02090 * 1 2 3 28 28 H 1.08994 * 109.47358 * 150.02335 * 1 2 3 29 29 H 1.07998 * 118.68834 * 0.02562 * 3 2 1 30 30 H 1.08006 * 119.73265 * 180.02562 * 4 3 2 31 31 H 1.08000 * 126.03832 * 180.02562 * 9 7 6 32 32 H 1.07998 * 120.29366 * 359.75013 * 13 12 11 33 33 H 1.08002 * 119.41107 * 180.02562 * 14 13 12 34 34 H 0.96995 * 119.99478 * 179.97438 * 20 19 17 35 35 H 1.08008 * 120.59031 * 0.27575 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1891 1.2137 0.0000 4 6 3.5429 1.2917 0.0005 5 6 4.3281 0.1197 0.0016 6 7 5.6253 -0.1303 0.0019 7 7 5.8206 -1.5164 0.0026 8 1 6.6846 -1.9572 0.0033 9 6 4.6353 -2.1443 0.0022 10 6 3.6473 -1.1845 0.0073 11 6 2.1835 -1.2039 0.0005 12 6 1.4443 -2.4866 0.0017 13 6 1.5259 -3.3640 -1.0888 14 6 0.8268 -4.5582 -1.0541 15 7 0.0872 -4.8840 -0.0166 16 6 -0.0250 -4.0842 1.0483 17 6 -0.8322 -4.4781 2.1407 18 1 -0.9258 -3.8345 3.0029 19 6 -1.5101 -5.7030 2.1044 20 7 -1.3964 -6.4824 1.0609 21 14 -2.5758 -6.2238 3.5476 22 1 -3.9621 -5.7333 3.3416 23 1 -2.5845 -7.7055 3.6472 24 1 -2.0277 -5.6467 4.8013 25 6 0.6537 -2.8554 1.0902 26 1 -0.3633 0.0005 1.0277 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3634 -0.8901 -0.5134 29 1 1.6172 2.1299 0.0004 30 1 4.0238 2.2588 0.0009 31 1 4.4826 -3.2135 0.0029 32 1 2.1291 -3.1105 -1.9481 33 1 0.8900 -5.2343 -1.8939 34 1 -1.8657 -7.3309 1.0360 35 1 0.5646 -2.2072 1.9496 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241523807.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:45 Heat of formation + Delta-G solvation = 103.052723 kcal Electronic energy + Delta-G solvation = -20390.710606 eV Core-core repulsion = 17354.018064 eV Total energy + Delta-G solvation = -3036.692542 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.12099 -40.09509 -38.32978 -35.55434 -34.24442 -32.60665 -31.89887 -31.18409 -30.36778 -27.61292 -27.32338 -24.90135 -23.56786 -23.04624 -21.92243 -21.02088 -19.08945 -18.98889 -17.61655 -17.04602 -16.25431 -16.20609 -16.09315 -15.79106 -15.71450 -15.46497 -14.46846 -14.20080 -14.09104 -13.96974 -13.79601 -13.05216 -12.93107 -12.83715 -12.73435 -12.68425 -12.35198 -12.29669 -12.11998 -11.75313 -11.38875 -11.18089 -10.97888 -9.93823 -9.59268 -9.55407 -9.45690 -8.42907 -8.25911 -6.48809 -0.40659 0.85373 0.93572 1.03915 1.42559 1.46140 1.54826 1.57095 1.83005 2.24815 2.80115 2.88733 3.32278 3.68425 3.93928 4.00962 4.10642 4.25943 4.27830 4.43874 4.55567 4.70269 4.71991 4.83753 4.87277 4.92408 5.00651 5.13582 5.24081 5.27954 5.40815 5.50960 5.55279 5.66382 5.78764 5.89830 5.97236 6.17531 6.25944 6.31261 6.59105 6.75809 6.99033 8.22863 8.47936 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.023959 B = 0.004668 C = 0.004373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.387484 B = 5997.388994 C = 6401.399362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.125 4.125 3 C -0.058 4.058 4 C -0.120 4.120 5 C 0.088 3.912 6 N -0.332 5.332 7 N -0.417 5.417 8 H 0.459 0.541 9 C 0.098 3.902 10 C -0.218 4.218 11 C 0.022 3.978 12 C 0.019 3.981 13 C -0.291 4.291 14 C 0.108 3.892 15 N -0.519 5.519 16 C 0.229 3.771 17 C -0.470 4.470 18 H 0.086 0.914 19 C 0.027 3.973 20 N -0.756 5.756 21 Si 0.982 3.018 22 H -0.263 1.263 23 H -0.268 1.268 24 H -0.257 1.257 25 C -0.259 4.259 26 H 0.065 0.935 27 H 0.087 0.913 28 H 0.041 0.959 29 H 0.160 0.840 30 H 0.149 0.851 31 H 0.203 0.797 32 H 0.115 0.885 33 H 0.138 0.862 34 H 0.278 0.722 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.413 8.775 -1.407 11.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.127 4.127 3 C -0.080 4.080 4 C -0.140 4.140 5 C -0.066 4.066 6 N -0.161 5.161 7 N -0.120 5.120 8 H 0.307 0.693 9 C -0.059 4.059 10 C -0.228 4.228 11 C 0.019 3.981 12 C 0.012 3.988 13 C -0.313 4.313 14 C -0.055 4.055 15 N -0.232 5.232 16 C 0.104 3.896 17 C -0.501 4.501 18 H 0.104 0.896 19 C -0.194 4.194 20 N -0.378 5.378 21 Si 0.803 3.197 22 H -0.187 1.187 23 H -0.193 1.193 24 H -0.181 1.181 25 C -0.281 4.281 26 H 0.083 0.917 27 H 0.106 0.894 28 H 0.060 0.940 29 H 0.178 0.822 30 H 0.167 0.833 31 H 0.220 0.780 32 H 0.133 0.867 33 H 0.155 0.845 34 H 0.089 0.911 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 8.124 8.319 -1.474 11.721 hybrid contribution -0.290 -0.483 0.407 0.694 sum 7.834 7.836 -1.068 11.132 Atomic orbital electron populations 1.20688 0.90585 1.02359 1.02115 1.19855 0.96522 0.91914 1.04384 1.20670 0.93626 0.97560 0.96178 1.20058 0.92698 0.95469 1.05805 1.21247 0.90609 0.95265 0.99493 1.77493 1.15582 0.91389 1.31631 1.46211 1.08704 1.04609 1.52484 0.69324 1.22827 0.84984 0.99557 0.98522 1.20635 0.93192 0.92986 1.15998 1.19187 0.89364 0.92073 0.97470 1.18658 0.94184 0.92250 0.93685 1.21506 1.11074 0.98191 1.00577 1.22834 0.92167 0.94249 0.96297 1.68680 1.20048 1.33427 1.01064 1.18896 0.90814 0.88262 0.91654 1.19952 1.24336 1.03720 1.02115 0.89631 1.26916 0.97319 0.95770 0.99407 1.70222 1.31121 1.08234 1.28233 0.85208 0.78403 0.78055 0.78049 1.18740 1.19292 1.18073 1.21805 1.06613 0.99861 0.99846 0.91661 0.89376 0.94026 0.82242 0.83314 0.78044 0.86669 0.84494 0.91113 0.88300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.10 9.02 71.23 0.64 -2.46 16 2 C -0.13 -4.06 5.90 -19.66 -0.12 -4.17 16 3 C -0.06 -1.51 9.45 21.90 0.21 -1.30 16 4 C -0.12 -3.22 10.02 22.36 0.22 -3.00 16 5 C 0.09 2.79 7.50 42.13 0.32 3.10 16 6 N -0.33 -9.95 12.71 -48.74 -0.62 -10.57 16 7 N -0.42 -9.90 7.19 -56.57 -0.41 -10.31 16 8 H 0.46 6.77 8.96 -213.40 -1.91 4.86 16 9 C 0.10 2.72 12.01 84.22 1.01 3.73 16 10 C -0.22 -7.40 6.34 -18.94 -0.12 -7.52 16 11 C 0.02 0.80 5.54 -18.59 -0.10 0.70 16 12 C 0.02 0.80 4.12 -19.89 -0.08 0.72 16 13 C -0.29 -12.31 9.89 22.79 0.23 -12.08 16 14 C 0.11 5.08 11.16 84.78 0.95 6.03 16 15 N -0.52 -28.39 7.85 -189.43 -1.49 -29.88 16 16 C 0.23 12.47 6.55 40.19 0.26 12.73 16 17 C -0.47 -25.32 9.14 23.49 0.21 -25.11 16 18 H 0.09 4.35 7.85 -2.91 -0.02 4.32 16 19 C 0.03 1.39 5.50 85.29 0.47 1.86 16 20 N -0.76 -40.48 11.46 21.84 0.25 -40.23 16 21 Si 0.98 37.86 29.56 68.60 2.03 39.89 16 22 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 23 H -0.27 -9.88 7.11 99.48 0.71 -9.17 16 24 H -0.26 -9.58 7.11 99.48 0.71 -8.88 16 25 C -0.26 -12.48 8.68 23.11 0.20 -12.28 16 26 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.09 2.08 8.07 -2.39 -0.02 2.07 16 28 H 0.04 1.52 6.86 -2.39 -0.02 1.51 16 29 H 0.16 2.89 8.06 -2.91 -0.02 2.87 16 30 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 31 H 0.20 4.85 8.06 -2.91 -0.02 4.82 16 32 H 0.12 4.33 8.06 -2.91 -0.02 4.31 16 33 H 0.14 5.67 8.06 -2.91 -0.02 5.65 16 34 H 0.28 13.46 8.29 -92.71 -0.77 12.70 16 35 H 0.10 4.64 8.06 -2.91 -0.02 4.62 16 Total: -1.00 -67.75 307.44 3.29 -64.47 By element: Atomic # 1 Polarization: 26.47 SS G_CDS: -0.78 Total: 25.69 kcal Atomic # 6 Polarization: -43.36 SS G_CDS: 4.30 Total: -39.06 kcal Atomic # 7 Polarization: -88.72 SS G_CDS: -2.26 Total: -90.98 kcal Atomic # 14 Polarization: 37.86 SS G_CDS: 2.03 Total: 39.89 kcal Total: -67.75 3.29 -64.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241523807.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.521 kcal (2) G-P(sol) polarization free energy of solvation -67.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds