Wall clock time and date at job start Wed Apr 15 2020 11:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50826 * 1 3 3 C 1.38205 * 117.98483 * 2 1 4 4 C 1.38153 * 120.49469 * 175.11978 * 3 2 1 5 5 Cl 1.73523 * 120.37843 * 179.17489 * 4 3 2 6 6 C 1.38272 * 119.42866 * 358.82083 * 4 3 2 7 7 C 1.37978 * 120.03129 * 1.20259 * 6 4 3 8 8 C 1.38815 * 121.28606 * 2.22113 * 7 6 4 9 9 N 1.39040 * 122.74027 * 173.41389 * 8 7 6 10 10 C 1.48447 * 109.85886 * 251.12807 * 9 8 7 11 11 C 1.53000 * 109.47295 * 175.42303 * 10 9 8 12 12 C 1.50698 * 109.47463 * 174.50101 * 11 10 9 13 13 H 1.08004 * 120.00067 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99967 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00169 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99914 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.47066 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47043 * 119.99896 * 16 14 12 19 19 H 1.48502 * 109.47302 * 240.00053 * 16 14 12 20 20 C 1.46050 * 117.36935 * 14.03566 * 9 8 7 21 21 C 1.52718 * 112.43000 * 21.43946 * 20 9 8 22 22 C 1.51136 * 118.78127 * 185.09338 * 7 6 4 23 23 H 1.09000 * 109.47573 * 90.00053 * 1 2 3 24 24 H 1.09000 * 109.47434 * 210.00360 * 1 2 3 25 25 H 1.09000 * 109.47468 * 329.99927 * 1 2 3 26 26 H 1.08099 * 119.51435 * 355.09181 * 3 2 1 27 27 H 1.07990 * 119.69130 * 181.23237 * 6 4 3 28 28 H 1.09001 * 109.47475 * 295.41944 * 10 9 8 29 29 H 1.09004 * 109.47371 * 55.42229 * 10 9 8 30 30 H 1.09003 * 109.47036 * 294.50103 * 11 10 9 31 31 H 1.09003 * 109.47315 * 54.49422 * 11 10 9 32 32 H 0.97000 * 119.99822 * 180.02562 * 15 14 12 33 33 H 1.09594 * 109.02758 * 142.78073 * 20 9 8 34 34 H 1.09645 * 108.94595 * 260.25923 * 20 9 8 35 35 H 1.08965 * 110.29865 * 59.99358 * 21 20 9 36 36 H 1.08982 * 110.23839 * 181.45152 * 21 20 9 37 37 H 1.08502 * 109.88450 * 266.98365 * 22 7 6 38 38 H 1.08482 * 109.92080 * 29.42024 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5083 0.0000 0.0000 3 6 2.1568 1.2204 0.0000 4 6 3.5332 1.2830 0.1013 5 17 4.3459 2.8159 0.0795 6 6 4.2589 0.1129 0.2277 7 6 3.6108 -1.1052 0.2271 8 6 2.2359 -1.1902 0.0554 9 7 1.5689 -2.4022 -0.0837 10 6 1.0942 -2.5590 -1.4814 11 6 0.4630 -3.9421 -1.6535 12 6 -0.1389 -4.0518 -3.0307 13 1 -0.0777 -3.2183 -3.7148 14 6 -0.7676 -5.2163 -3.4175 15 7 -0.8426 -6.2312 -2.5844 16 14 -1.5143 -5.3521 -5.1244 17 1 -1.2974 -4.0815 -5.8621 18 1 -0.8672 -6.4678 -5.8604 19 1 -2.9712 -5.6149 -5.0080 20 6 2.3023 -3.6161 0.2651 21 6 3.4771 -3.3386 1.2007 22 6 4.4162 -2.3582 0.4834 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3634 0.8900 0.5138 26 1 1.5790 2.1305 -0.0805 27 1 5.3333 0.1579 0.3273 28 1 0.3525 -1.7913 -1.7016 29 1 1.9371 -2.4567 -2.1651 30 1 1.2279 -4.7086 -1.5292 31 1 -0.3163 -4.0816 -0.9042 32 1 -1.2847 -7.0505 -2.8567 33 1 1.6161 -4.3225 0.7458 34 1 2.6760 -4.0827 -0.6540 35 1 3.1234 -2.8907 2.1290 36 1 4.0133 -4.2624 1.4168 37 1 4.7429 -2.7861 -0.4586 38 1 5.2635 -2.1290 1.1209 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342594045.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:38 Heat of formation + Delta-G solvation = 5.606295 kcal Electronic energy + Delta-G solvation = -19636.849623 eV Core-core repulsion = 16697.038980 eV Total energy + Delta-G solvation = -2939.810643 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.50309 -37.34906 -36.06253 -34.70098 -33.08522 -31.33018 -30.28455 -29.17779 -26.61749 -25.35256 -23.89538 -23.07268 -21.11574 -20.32948 -19.21398 -16.80067 -16.27116 -16.13544 -15.79703 -14.74838 -14.50381 -14.14931 -13.90147 -13.56017 -13.35214 -13.20358 -12.83952 -12.62470 -12.30781 -12.20967 -11.83997 -11.68323 -11.47327 -11.23909 -11.02902 -10.90562 -10.76534 -10.62713 -10.60252 -10.43184 -10.10606 -9.61090 -9.19040 -8.89663 -8.55016 -8.40383 -7.37478 -6.07743 -4.10486 1.29964 1.37987 2.22681 3.27091 3.35038 3.38797 3.58086 4.21039 4.42821 4.72212 4.83745 5.00044 5.09556 5.22224 5.29027 5.33845 5.46953 5.59428 5.66957 5.81922 5.88813 5.91164 5.94901 5.98829 6.12525 6.22199 6.25377 6.30406 6.33468 6.38385 6.48714 6.63993 6.78680 6.81782 7.22593 7.56154 7.72818 7.84465 7.94402 8.31595 8.95653 9.53957 11.03488 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.022788 B = 0.004373 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.447816 B = 6400.770755 C = 7028.146317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.086 4.086 3 C -0.101 4.101 4 C -0.059 4.059 5 Cl -0.086 7.086 6 C -0.096 4.096 7 C -0.122 4.122 8 C 0.149 3.851 9 N -0.498 5.498 10 C 0.065 3.935 11 C 0.021 3.979 12 C -0.522 4.522 13 H 0.056 0.944 14 C 0.060 3.940 15 N -0.892 5.892 16 Si 0.892 3.108 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.283 1.283 20 C 0.055 3.945 21 C -0.130 4.130 22 C -0.080 4.080 23 H 0.070 0.930 24 H 0.081 0.919 25 H 0.060 0.940 26 H 0.129 0.871 27 H 0.127 0.873 28 H 0.072 0.928 29 H 0.030 0.970 30 H 0.022 0.978 31 H 0.027 0.973 32 H 0.261 0.739 33 H 0.084 0.916 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.211 11.694 7.657 16.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.088 4.088 3 C -0.120 4.120 4 C -0.086 4.086 5 Cl -0.057 7.057 6 C -0.116 4.116 7 C -0.126 4.126 8 C 0.050 3.950 9 N -0.213 5.213 10 C -0.058 4.058 11 C -0.016 4.016 12 C -0.561 4.561 13 H 0.074 0.926 14 C -0.141 4.141 15 N -0.531 5.531 16 Si 0.720 3.280 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.209 1.209 20 C -0.072 4.072 21 C -0.168 4.168 22 C -0.117 4.117 23 H 0.089 0.911 24 H 0.100 0.900 25 H 0.079 0.921 26 H 0.147 0.853 27 H 0.145 0.855 28 H 0.090 0.910 29 H 0.049 0.951 30 H 0.040 0.960 31 H 0.046 0.954 32 H 0.070 0.930 33 H 0.103 0.897 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.783 11.593 7.981 16.590 hybrid contribution 0.317 0.007 -1.354 1.391 sum 9.100 11.600 6.627 16.164 Atomic orbital electron populations 1.20777 0.90060 1.02955 1.02641 1.19809 0.96664 0.90580 1.01797 1.20779 0.92177 0.97858 1.01229 1.20567 0.92767 0.86106 1.09183 1.98328 1.79664 1.30435 1.97299 1.20618 0.99587 0.90074 1.01288 1.20083 0.93065 0.95067 1.04358 1.18543 0.89670 0.90641 0.96193 1.58663 1.38253 0.99338 1.25085 1.22913 0.98338 1.02570 0.81945 1.19309 0.96110 0.88940 0.97286 1.21154 1.36276 0.99588 0.99100 0.92620 1.24970 0.96072 0.95768 0.97319 1.69968 1.43650 1.04187 1.35306 0.86533 0.78980 0.78090 0.84396 1.19707 1.20996 1.20913 1.22238 0.94463 0.91231 0.99272 1.21873 0.96417 0.99558 0.98967 1.20687 0.97258 0.92861 1.00918 0.91093 0.90014 0.92120 0.85341 0.85508 0.91003 0.95148 0.95960 0.95421 0.92956 0.89735 0.91983 0.91302 0.90468 0.90387 0.90616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.50 8.61 36.07 0.31 -1.19 16 2 C -0.09 -1.29 5.65 -104.06 -0.59 -1.88 16 3 C -0.10 -1.38 9.34 -39.62 -0.37 -1.75 16 4 C -0.06 -0.79 6.32 -39.60 -0.25 -1.04 16 5 Cl -0.09 -1.02 28.97 -51.86 -1.50 -2.53 16 6 C -0.10 -1.28 9.41 -39.66 -0.37 -1.66 16 7 C -0.12 -1.77 5.65 -104.29 -0.59 -2.36 16 8 C 0.15 2.41 5.09 -83.87 -0.43 1.98 16 9 N -0.50 -8.80 4.08 -170.16 -0.69 -9.50 16 10 C 0.07 1.33 4.46 -2.97 -0.01 1.31 16 11 C 0.02 0.51 4.30 -27.88 -0.12 0.39 16 12 C -0.52 -14.24 9.11 -34.44 -0.31 -14.56 16 13 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 14 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -25.91 13.29 55.43 0.74 -25.17 16 16 Si 0.89 21.14 29.54 -169.99 -5.02 16.11 16 17 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 C 0.05 0.90 4.56 -4.43 -0.02 0.88 16 21 C -0.13 -1.70 6.00 -26.59 -0.16 -1.86 16 22 C -0.08 -1.00 6.00 -27.39 -0.16 -1.17 16 23 H 0.07 1.00 7.33 -51.93 -0.38 0.62 16 24 H 0.08 1.25 7.63 -51.93 -0.40 0.85 16 25 H 0.06 0.70 8.04 -51.93 -0.42 0.28 16 26 H 0.13 1.51 8.06 -52.43 -0.42 1.08 16 27 H 0.13 1.44 8.06 -52.49 -0.42 1.01 16 28 H 0.07 1.45 6.07 -51.93 -0.32 1.14 16 29 H 0.03 0.63 8.11 -51.93 -0.42 0.21 16 30 H 0.02 0.57 6.28 -51.93 -0.33 0.24 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 33 H 0.08 1.46 8.09 -51.59 -0.42 1.04 16 34 H 0.06 1.11 6.28 -51.56 -0.32 0.79 16 35 H 0.07 0.90 8.14 -51.95 -0.42 0.48 16 36 H 0.08 0.86 8.14 -51.94 -0.42 0.44 16 37 H 0.08 0.99 8.10 -52.21 -0.42 0.57 16 38 H 0.08 0.79 8.03 -52.22 -0.42 0.37 16 LS Contribution 317.70 15.07 4.79 4.79 Total: -1.00 -28.37 317.70 -10.36 -38.74 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -5.49 Total: -1.13 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: -3.18 Total: -21.32 kcal Atomic # 7 Polarization: -34.71 SS G_CDS: 0.04 Total: -34.67 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -1.50 Total: -2.53 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.37 -10.36 -38.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342594045.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.344 kcal (2) G-P(sol) polarization free energy of solvation -28.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds