Wall clock time and date at job start Wed Apr 15 2020 11:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50826 * 1 3 3 C 1.38205 * 117.98483 * 2 1 4 4 C 1.38153 * 120.49469 * 175.11978 * 3 2 1 5 5 Cl 1.73523 * 120.37843 * 179.17489 * 4 3 2 6 6 C 1.38272 * 119.42866 * 358.82083 * 4 3 2 7 7 C 1.37978 * 120.03129 * 1.20259 * 6 4 3 8 8 C 1.38815 * 121.28606 * 2.22113 * 7 6 4 9 9 N 1.39040 * 122.74027 * 173.41389 * 8 7 6 10 10 C 1.48447 * 109.85886 * 251.12807 * 9 8 7 11 11 C 1.53000 * 109.47295 * 175.42303 * 10 9 8 12 12 C 1.50698 * 109.47463 * 174.50101 * 11 10 9 13 13 H 1.08004 * 120.00067 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99967 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00169 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99914 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.47066 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47043 * 119.99896 * 16 14 12 19 19 H 1.48502 * 109.47302 * 240.00053 * 16 14 12 20 20 C 1.46050 * 117.36935 * 14.03566 * 9 8 7 21 21 C 1.52718 * 112.43000 * 21.43946 * 20 9 8 22 22 C 1.51136 * 118.78127 * 185.09338 * 7 6 4 23 23 H 1.09000 * 109.47573 * 90.00053 * 1 2 3 24 24 H 1.09000 * 109.47434 * 210.00360 * 1 2 3 25 25 H 1.09000 * 109.47468 * 329.99927 * 1 2 3 26 26 H 1.08099 * 119.51435 * 355.09181 * 3 2 1 27 27 H 1.07990 * 119.69130 * 181.23237 * 6 4 3 28 28 H 1.09001 * 109.47475 * 295.41944 * 10 9 8 29 29 H 1.09004 * 109.47371 * 55.42229 * 10 9 8 30 30 H 1.09003 * 109.47036 * 294.50103 * 11 10 9 31 31 H 1.09003 * 109.47315 * 54.49422 * 11 10 9 32 32 H 0.97000 * 119.99822 * 180.02562 * 15 14 12 33 33 H 1.09594 * 109.02758 * 142.78073 * 20 9 8 34 34 H 1.09645 * 108.94595 * 260.25923 * 20 9 8 35 35 H 1.08965 * 110.29865 * 59.99358 * 21 20 9 36 36 H 1.08982 * 110.23839 * 181.45152 * 21 20 9 37 37 H 1.08502 * 109.88450 * 266.98365 * 22 7 6 38 38 H 1.08482 * 109.92080 * 29.42024 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5083 0.0000 0.0000 3 6 2.1568 1.2204 0.0000 4 6 3.5332 1.2830 0.1013 5 17 4.3459 2.8159 0.0795 6 6 4.2589 0.1129 0.2277 7 6 3.6108 -1.1052 0.2271 8 6 2.2359 -1.1902 0.0554 9 7 1.5689 -2.4022 -0.0837 10 6 1.0942 -2.5590 -1.4814 11 6 0.4630 -3.9421 -1.6535 12 6 -0.1389 -4.0518 -3.0307 13 1 -0.0777 -3.2183 -3.7148 14 6 -0.7676 -5.2163 -3.4175 15 7 -0.8426 -6.2312 -2.5844 16 14 -1.5143 -5.3521 -5.1244 17 1 -1.2974 -4.0815 -5.8621 18 1 -0.8672 -6.4678 -5.8604 19 1 -2.9712 -5.6149 -5.0080 20 6 2.3023 -3.6161 0.2651 21 6 3.4771 -3.3386 1.2007 22 6 4.4162 -2.3582 0.4834 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3634 0.8900 0.5138 26 1 1.5790 2.1305 -0.0805 27 1 5.3333 0.1579 0.3273 28 1 0.3525 -1.7913 -1.7016 29 1 1.9371 -2.4567 -2.1651 30 1 1.2279 -4.7086 -1.5292 31 1 -0.3163 -4.0816 -0.9042 32 1 -1.2847 -7.0505 -2.8567 33 1 1.6161 -4.3225 0.7458 34 1 2.6760 -4.0827 -0.6540 35 1 3.1234 -2.8907 2.1290 36 1 4.0133 -4.2624 1.4168 37 1 4.7429 -2.7861 -0.4586 38 1 5.2635 -2.1290 1.1209 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342594045.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:38 Heat of formation + Delta-G solvation = -8.034483 kcal Electronic energy + Delta-G solvation = -19637.441132 eV Core-core repulsion = 16697.038980 eV Total energy + Delta-G solvation = -2940.402151 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.69336 -38.54148 -37.15744 -35.99347 -34.95655 -32.70464 -31.55330 -30.71364 -27.86312 -26.84038 -25.51137 -24.24578 -22.58814 -21.68400 -20.42531 -18.62880 -17.56539 -17.43881 -17.00432 -16.44586 -16.12004 -15.55614 -15.09755 -14.73317 -14.59731 -14.42048 -14.20025 -13.92847 -13.63918 -13.44216 -13.27493 -13.00607 -12.85964 -12.76152 -12.63479 -12.43658 -12.10640 -11.92760 -11.87440 -11.72953 -11.57292 -11.41385 -11.20211 -10.57938 -10.16307 -9.62103 -8.65788 -8.21120 -6.32009 0.15727 0.29844 1.19297 1.40146 1.41136 1.53685 2.36486 2.46859 2.95887 3.12873 3.65998 3.77457 3.88507 3.95953 4.18431 4.26198 4.36182 4.38765 4.47283 4.52203 4.65574 4.68467 4.82542 4.83339 4.90071 4.90976 4.95160 5.04645 5.12762 5.20662 5.24112 5.32667 5.44862 5.49113 5.60170 5.68527 5.82348 6.00034 6.23353 6.55601 6.83120 7.37074 8.90575 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.022788 B = 0.004373 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.447816 B = 6400.770755 C = 7028.146317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.096 4.096 3 C -0.103 4.103 4 C -0.058 4.058 5 Cl -0.069 7.069 6 C -0.096 4.096 7 C -0.126 4.126 8 C 0.116 3.884 9 N -0.502 5.502 10 C 0.085 3.915 11 C 0.033 3.967 12 C -0.543 4.543 13 H 0.058 0.942 14 C 0.007 3.993 15 N -0.928 5.928 16 Si 0.962 3.038 17 H -0.264 1.264 18 H -0.278 1.278 19 H -0.278 1.278 20 C 0.055 3.945 21 C -0.121 4.121 22 C -0.077 4.077 23 H 0.065 0.935 24 H 0.061 0.939 25 H 0.086 0.914 26 H 0.148 0.852 27 H 0.151 0.849 28 H 0.070 0.930 29 H 0.022 0.978 30 H 0.005 0.995 31 H -0.001 1.001 32 H 0.264 0.736 33 H 0.065 0.935 34 H 0.041 0.959 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.076 0.924 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.459 13.381 7.502 18.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.098 4.098 3 C -0.122 4.122 4 C -0.085 4.085 5 Cl -0.040 7.040 6 C -0.116 4.116 7 C -0.129 4.129 8 C 0.018 3.982 9 N -0.218 5.218 10 C -0.039 4.039 11 C -0.005 4.005 12 C -0.582 4.582 13 H 0.076 0.924 14 C -0.191 4.191 15 N -0.568 5.568 16 Si 0.787 3.213 17 H -0.188 1.188 18 H -0.204 1.204 19 H -0.203 1.203 20 C -0.072 4.072 21 C -0.158 4.158 22 C -0.114 4.114 23 H 0.083 0.917 24 H 0.080 0.920 25 H 0.104 0.896 26 H 0.166 0.834 27 H 0.169 0.831 28 H 0.089 0.911 29 H 0.041 0.959 30 H 0.023 0.977 31 H 0.017 0.983 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.059 0.941 35 H 0.089 0.911 36 H 0.117 0.883 37 H 0.094 0.906 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 10.047 13.308 7.839 18.425 hybrid contribution -0.021 -0.428 -1.260 1.331 sum 10.026 12.879 6.579 17.598 Atomic orbital electron populations 1.20743 0.89810 1.03219 1.02321 1.20001 0.97109 0.90915 1.01816 1.20971 0.92631 0.97918 1.00686 1.20746 0.92907 0.86984 1.07879 1.98339 1.79267 1.29274 1.97147 1.20873 1.00762 0.89440 1.00476 1.20318 0.92563 0.96473 1.03543 1.18697 0.90825 0.90024 0.98659 1.58530 1.39612 1.00495 1.23128 1.22475 0.97698 0.99683 0.84040 1.19086 0.94781 0.91093 0.95496 1.21566 1.36532 0.99845 1.00221 0.92421 1.25861 0.96453 0.95356 1.01453 1.70091 1.44490 1.04795 1.37400 0.85443 0.78104 0.78394 0.79379 1.18764 1.20371 1.20333 1.22185 0.95364 0.90568 0.99058 1.21820 0.95099 1.00949 0.97957 1.20755 0.97653 0.91685 1.01307 0.91666 0.92024 0.89552 0.83435 0.83147 0.91124 0.95918 0.97678 0.98308 0.92707 0.91659 0.94063 0.91115 0.88279 0.90607 0.87590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.89 8.61 71.28 0.61 -2.28 16 2 C -0.10 -2.82 5.65 -19.50 -0.11 -2.93 16 3 C -0.10 -2.59 9.34 22.24 0.21 -2.39 16 4 C -0.06 -1.40 6.32 22.26 0.14 -1.26 16 5 Cl -0.07 -1.45 28.97 -2.72 -0.08 -1.52 16 6 C -0.10 -2.30 9.41 22.22 0.21 -2.10 16 7 C -0.13 -3.45 5.65 -19.65 -0.11 -3.56 16 8 C 0.12 3.72 5.09 38.47 0.20 3.91 16 9 N -0.50 -18.32 4.08 -692.26 -2.82 -21.14 16 10 C 0.09 3.60 4.46 86.00 0.38 3.99 16 11 C 0.03 1.69 4.30 29.85 0.13 1.82 16 12 C -0.54 -30.41 9.11 25.60 0.23 -30.18 16 13 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 14 C 0.01 0.41 5.46 84.65 0.46 0.87 16 15 N -0.93 -55.26 13.29 21.45 0.28 -54.97 16 16 Si 0.96 43.63 29.54 68.60 2.03 45.66 16 17 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 18 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 19 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 20 C 0.06 1.89 4.56 86.37 0.39 2.28 16 21 C -0.12 -3.03 6.00 30.68 0.18 -2.84 16 22 C -0.08 -1.77 6.00 30.17 0.18 -1.59 16 23 H 0.06 1.85 7.33 -2.39 -0.02 1.83 16 24 H 0.06 1.94 7.63 -2.39 -0.02 1.92 16 25 H 0.09 1.88 8.04 -2.39 -0.02 1.86 16 26 H 0.15 3.07 8.06 -2.86 -0.02 3.05 16 27 H 0.15 2.84 8.06 -2.92 -0.02 2.82 16 28 H 0.07 2.96 6.07 -2.39 -0.01 2.95 16 29 H 0.02 0.97 8.11 -2.39 -0.02 0.95 16 30 H 0.00 0.27 6.28 -2.39 -0.01 0.26 16 31 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 32 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 33 H 0.07 2.42 8.09 -2.07 -0.02 2.41 16 34 H 0.04 1.56 6.28 -2.04 -0.01 1.55 16 35 H 0.07 1.77 8.14 -2.41 -0.02 1.75 16 36 H 0.10 2.05 8.14 -2.40 -0.02 2.03 16 37 H 0.08 1.80 8.10 -2.65 -0.02 1.78 16 38 H 0.11 1.82 8.03 -2.66 -0.02 1.80 16 Total: -1.00 -61.78 317.70 3.57 -58.21 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: 1.05 Total: 10.01 kcal Atomic # 6 Polarization: -39.35 SS G_CDS: 3.11 Total: -36.24 kcal Atomic # 7 Polarization: -73.58 SS G_CDS: -2.54 Total: -76.12 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 17 Polarization: -1.45 SS G_CDS: -0.08 Total: -1.52 kcal Total: -61.78 3.57 -58.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342594045.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.180 kcal (2) G-P(sol) polarization free energy of solvation -61.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds