Wall clock time and date at job start Wed Apr 15 2020 11:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38324 * 119.92267 * 2 1 4 4 C 1.38159 * 120.05780 * 180.02562 * 3 2 1 5 5 Cl 1.73608 * 120.04474 * 179.97438 * 4 3 2 6 6 C 1.39028 * 119.91022 * 359.97438 * 4 3 2 7 7 N 1.39751 * 120.07685 * 179.97438 * 6 4 3 8 8 C 1.46507 * 119.99943 * 173.76280 * 7 6 4 9 9 C 1.52998 * 109.47466 * 184.89637 * 8 7 6 10 10 C 1.50699 * 115.54866 * 279.14066 * 9 8 7 11 11 H 1.08004 * 119.99748 * 91.86792 * 10 9 8 12 12 C 1.37876 * 119.99882 * 271.86094 * 10 9 8 13 13 N 1.31512 * 120.00205 * 7.95732 * 12 10 9 14 14 Si 1.86806 * 119.99860 * 187.96315 * 12 10 9 15 15 H 1.48501 * 109.47050 * 89.99738 * 14 12 10 16 16 H 1.48499 * 109.46773 * 209.99704 * 14 12 10 17 17 H 1.48504 * 109.46820 * 329.99731 * 14 12 10 18 18 C 1.52997 * 117.49696 * 133.42671 * 9 8 7 19 19 C 1.52997 * 60.00118 * 252.51657 * 18 9 8 20 20 C 1.38838 * 119.84410 * 359.77465 * 6 4 3 21 21 C 1.38162 * 119.93729 * 0.48208 * 20 6 4 22 22 C 1.50694 * 119.95376 * 179.77239 * 21 20 6 23 23 H 1.09001 * 109.46941 * 269.98021 * 1 2 3 24 24 H 1.09008 * 109.46798 * 29.97679 * 1 2 3 25 25 H 1.08994 * 109.47283 * 149.98161 * 1 2 3 26 26 H 1.07997 * 119.96466 * 359.97438 * 3 2 1 27 27 H 0.96997 * 120.00601 * 353.77220 * 7 6 4 28 28 H 1.08997 * 109.47255 * 304.90434 * 8 7 6 29 29 H 1.09009 * 109.46702 * 64.89678 * 8 7 6 30 30 H 0.97003 * 120.00088 * 185.00859 * 13 12 10 31 31 H 1.08996 * 117.50121 * 0.02562 * 18 9 8 32 32 H 1.09005 * 117.49454 * 145.02231 * 18 9 8 33 33 H 1.09006 * 117.49476 * 252.51477 * 19 18 9 34 34 H 1.08993 * 117.52140 * 107.48623 * 19 18 9 35 35 H 1.07995 * 120.03244 * 180.22808 * 20 6 4 36 36 H 1.09007 * 109.46742 * 269.71766 * 22 21 20 37 37 H 1.09001 * 109.47174 * 149.72630 * 22 21 20 38 38 H 1.08998 * 109.47382 * 29.72189 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1989 0.0000 4 6 3.5786 1.2021 -0.0005 5 17 4.4443 2.7070 -0.0012 6 6 4.2747 -0.0014 -0.0005 7 7 5.6722 -0.0021 -0.0016 8 6 6.4041 -1.2638 0.1362 9 6 7.9041 -0.9760 0.2273 10 6 8.5998 -0.7311 -1.0869 11 1 8.6955 0.2750 -1.4680 12 6 9.1142 -1.7913 -1.8026 13 7 8.8638 -3.0250 -1.4219 14 14 10.1670 -1.4754 -3.3131 15 1 11.5931 -1.3769 -2.9106 16 1 10.0004 -2.5941 -4.2753 17 1 9.7445 -0.2041 -3.9538 18 6 8.6954 -1.6919 1.3236 19 6 8.4008 -0.1956 1.4459 20 6 3.5782 -1.2024 0.0047 21 6 2.1966 -1.1982 -0.0001 22 6 1.4403 -2.5016 0.0004 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3633 0.8903 -0.5135 25 1 -0.3633 -0.8898 -0.5141 26 1 1.6552 2.1331 -0.0004 27 1 6.1577 0.8326 -0.0935 28 1 6.0770 -1.7767 1.0406 29 1 6.2071 -1.8946 -0.7307 30 1 9.2841 -3.7690 -1.8810 31 1 8.1477 -2.3683 1.9797 32 1 9.7197 -1.9862 1.0943 33 1 9.2313 0.4946 1.2972 34 1 7.6592 0.1131 2.1825 35 1 4.1158 -2.1390 0.0085 36 1 1.2571 -2.8158 -1.0272 37 1 0.4884 -2.3692 0.5149 38 1 2.0280 -3.2626 0.5138 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594705315.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:44 Heat of formation + Delta-G solvation = 24.453903 kcal Electronic energy + Delta-G solvation = -19261.810270 eV Core-core repulsion = 16322.816921 eV Total energy + Delta-G solvation = -2938.993349 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.51198 -37.16488 -36.20151 -34.80247 -32.10847 -31.96821 -30.89481 -27.11462 -26.81979 -25.50456 -24.14019 -21.80868 -21.22254 -20.18425 -19.20281 -16.81910 -16.29497 -15.73737 -15.04912 -14.70403 -14.31363 -14.17216 -13.75297 -13.58423 -13.21462 -13.04667 -12.75730 -12.70576 -12.26549 -12.08631 -11.96321 -11.59756 -11.31032 -11.10368 -10.95680 -10.84584 -10.74596 -10.56360 -10.48791 -10.27535 -9.64749 -9.45428 -8.81585 -8.49564 -8.34766 -8.27874 -6.80408 -6.12682 -4.19082 1.52365 1.83476 2.56208 3.25317 3.33008 3.35961 3.96935 4.02791 4.35331 4.98678 5.02384 5.16551 5.27598 5.35671 5.38265 5.46944 5.66243 5.72838 5.80833 5.83520 5.93695 5.96984 6.13868 6.22576 6.30761 6.34021 6.45693 6.52227 6.57112 6.65366 6.73261 6.89584 7.02968 7.14030 7.36082 7.44375 7.79073 7.90340 8.31746 8.35978 8.82899 9.48065 10.96131 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.018282 B = 0.004968 C = 0.004591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.166044 B = 5634.799554 C = 6097.641948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.160 4.160 3 C -0.057 4.057 4 C -0.128 4.128 5 Cl -0.084 7.084 6 C 0.243 3.757 7 N -0.717 5.717 8 C 0.164 3.836 9 C 0.027 3.973 10 C -0.496 4.496 11 H 0.059 0.941 12 C 0.074 3.926 13 N -0.876 5.876 14 Si 0.888 3.112 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.273 1.273 18 C -0.145 4.145 19 C -0.209 4.209 20 C -0.192 4.192 21 C -0.031 4.031 22 C -0.116 4.116 23 H 0.060 0.940 24 H 0.058 0.942 25 H 0.062 0.938 26 H 0.123 0.877 27 H 0.403 0.597 28 H 0.035 0.965 29 H 0.067 0.933 30 H 0.261 0.739 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.130 0.870 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.632 3.829 3.725 14.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.163 4.163 3 C -0.076 4.076 4 C -0.160 4.160 5 Cl -0.055 7.055 6 C 0.133 3.867 7 N -0.341 5.341 8 C 0.041 3.959 9 C 0.026 3.974 10 C -0.534 4.534 11 H 0.078 0.922 12 C -0.130 4.130 13 N -0.512 5.512 14 Si 0.715 3.285 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.198 1.198 18 C -0.183 4.183 19 C -0.246 4.246 20 C -0.216 4.216 21 C -0.032 4.032 22 C -0.172 4.172 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.141 0.859 27 H 0.240 0.760 28 H 0.053 0.947 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.148 0.852 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.410 3.549 3.650 14.344 hybrid contribution 1.088 0.527 -0.855 1.480 sum -12.323 4.076 2.795 13.277 Atomic orbital electron populations 1.20607 0.91494 1.02060 1.01438 1.19242 0.95496 0.91821 1.09733 1.20514 0.91097 0.97948 0.98070 1.20256 0.92203 0.85106 1.18436 1.98315 1.77268 1.32345 1.97601 1.17678 0.85104 0.91867 0.92070 1.45206 1.01152 1.11188 1.76566 1.21171 0.91807 0.83893 0.99071 1.19008 0.89539 0.99082 0.89721 1.20400 1.36971 0.93134 1.02869 0.92245 1.24942 0.95879 0.95028 0.97139 1.70017 1.41317 0.97964 1.41938 0.86659 0.80880 0.78010 0.82927 1.20604 1.21219 1.19802 1.22482 1.01443 0.92011 1.02346 1.22986 1.03179 0.95285 1.03187 1.20501 0.93353 0.96454 1.11257 1.19520 0.92897 0.94652 0.96123 1.20830 0.99797 0.94307 1.02286 0.92155 0.92305 0.91862 0.85872 0.76035 0.94682 0.91459 0.92931 0.91745 0.89795 0.90330 0.91579 0.85185 0.91102 0.91451 0.91494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.98 9.19 36.01 0.33 -0.65 16 2 C -0.16 -2.14 5.88 -104.59 -0.62 -2.75 16 3 C -0.06 -0.81 9.48 -39.58 -0.38 -1.19 16 4 C -0.13 -2.10 6.34 -39.32 -0.25 -2.35 16 5 Cl -0.08 -1.31 27.61 -51.86 -1.43 -2.74 16 6 C 0.24 4.35 6.64 -83.73 -0.56 3.80 16 7 N -0.72 -14.04 5.63 -58.59 -0.33 -14.37 16 8 C 0.16 3.53 4.82 -4.04 -0.02 3.51 16 9 C 0.03 0.64 1.38 -155.66 -0.22 0.42 16 10 C -0.50 -13.00 8.83 -34.44 -0.30 -13.31 16 11 H 0.06 1.58 7.83 -52.48 -0.41 1.17 16 12 C 0.07 1.96 5.36 -17.82 -0.10 1.86 16 13 N -0.88 -23.89 12.84 55.43 0.71 -23.17 16 14 Si 0.89 20.72 29.55 -169.99 -5.02 15.70 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 18 C -0.14 -3.27 9.25 -26.73 -0.25 -3.52 16 19 C -0.21 -4.41 9.91 -26.73 -0.26 -4.68 16 20 C -0.19 -3.20 8.95 -39.39 -0.35 -3.55 16 21 C -0.03 -0.44 5.88 -104.65 -0.62 -1.05 16 22 C -0.12 -1.27 9.19 36.00 0.33 -0.94 16 23 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.53 8.08 -51.92 -0.42 0.11 16 25 H 0.06 0.56 6.69 -51.93 -0.35 0.22 16 26 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 27 H 0.40 8.02 7.18 -40.82 -0.29 7.73 16 28 H 0.03 0.72 7.74 -51.93 -0.40 0.32 16 29 H 0.07 1.60 7.94 -51.92 -0.41 1.19 16 30 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 31 H 0.06 1.36 8.08 -51.93 -0.42 0.94 16 32 H 0.08 2.03 8.14 -51.93 -0.42 1.60 16 33 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 34 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 35 H 0.13 2.19 6.77 -52.49 -0.36 1.84 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.62 6.69 -51.93 -0.35 0.27 16 38 H 0.07 0.71 8.08 -51.93 -0.42 0.29 16 LS Contribution 330.23 15.07 4.98 4.98 Total: -1.00 -26.74 330.23 -9.84 -36.59 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -5.50 Total: 7.42 kcal Atomic # 6 Polarization: -21.14 SS G_CDS: -3.25 Total: -24.39 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.38 Total: -37.55 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -1.43 Total: -2.74 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -26.74 -9.84 -36.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594705315.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.040 kcal (2) G-P(sol) polarization free energy of solvation -26.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds