Wall clock time and date at job start Wed Apr 15 2020 11:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38324 * 119.92267 * 2 1 4 4 C 1.38159 * 120.05780 * 180.02562 * 3 2 1 5 5 Cl 1.73608 * 120.04474 * 179.97438 * 4 3 2 6 6 C 1.39028 * 119.91022 * 359.97438 * 4 3 2 7 7 N 1.39751 * 120.07685 * 179.97438 * 6 4 3 8 8 C 1.46507 * 119.99943 * 173.76280 * 7 6 4 9 9 C 1.52998 * 109.47466 * 184.89637 * 8 7 6 10 10 C 1.50699 * 115.54866 * 279.14066 * 9 8 7 11 11 H 1.08004 * 119.99748 * 91.86792 * 10 9 8 12 12 C 1.37876 * 119.99882 * 271.86094 * 10 9 8 13 13 N 1.31512 * 120.00205 * 7.95732 * 12 10 9 14 14 Si 1.86806 * 119.99860 * 187.96315 * 12 10 9 15 15 H 1.48501 * 109.47050 * 89.99738 * 14 12 10 16 16 H 1.48499 * 109.46773 * 209.99704 * 14 12 10 17 17 H 1.48504 * 109.46820 * 329.99731 * 14 12 10 18 18 C 1.52997 * 117.49696 * 133.42671 * 9 8 7 19 19 C 1.52997 * 60.00118 * 252.51657 * 18 9 8 20 20 C 1.38838 * 119.84410 * 359.77465 * 6 4 3 21 21 C 1.38162 * 119.93729 * 0.48208 * 20 6 4 22 22 C 1.50694 * 119.95376 * 179.77239 * 21 20 6 23 23 H 1.09001 * 109.46941 * 269.98021 * 1 2 3 24 24 H 1.09008 * 109.46798 * 29.97679 * 1 2 3 25 25 H 1.08994 * 109.47283 * 149.98161 * 1 2 3 26 26 H 1.07997 * 119.96466 * 359.97438 * 3 2 1 27 27 H 0.96997 * 120.00601 * 353.77220 * 7 6 4 28 28 H 1.08997 * 109.47255 * 304.90434 * 8 7 6 29 29 H 1.09009 * 109.46702 * 64.89678 * 8 7 6 30 30 H 0.97003 * 120.00088 * 185.00859 * 13 12 10 31 31 H 1.08996 * 117.50121 * 0.02562 * 18 9 8 32 32 H 1.09005 * 117.49454 * 145.02231 * 18 9 8 33 33 H 1.09006 * 117.49476 * 252.51477 * 19 18 9 34 34 H 1.08993 * 117.52140 * 107.48623 * 19 18 9 35 35 H 1.07995 * 120.03244 * 180.22808 * 20 6 4 36 36 H 1.09007 * 109.46742 * 269.71766 * 22 21 20 37 37 H 1.09001 * 109.47174 * 149.72630 * 22 21 20 38 38 H 1.08998 * 109.47382 * 29.72189 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1989 0.0000 4 6 3.5786 1.2021 -0.0005 5 17 4.4443 2.7070 -0.0012 6 6 4.2747 -0.0014 -0.0005 7 7 5.6722 -0.0021 -0.0016 8 6 6.4041 -1.2638 0.1362 9 6 7.9041 -0.9760 0.2273 10 6 8.5998 -0.7311 -1.0869 11 1 8.6955 0.2750 -1.4680 12 6 9.1142 -1.7913 -1.8026 13 7 8.8638 -3.0250 -1.4219 14 14 10.1670 -1.4754 -3.3131 15 1 11.5931 -1.3769 -2.9106 16 1 10.0004 -2.5941 -4.2753 17 1 9.7445 -0.2041 -3.9538 18 6 8.6954 -1.6919 1.3236 19 6 8.4008 -0.1956 1.4459 20 6 3.5782 -1.2024 0.0047 21 6 2.1966 -1.1982 -0.0001 22 6 1.4403 -2.5016 0.0004 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3633 0.8903 -0.5135 25 1 -0.3633 -0.8898 -0.5141 26 1 1.6552 2.1331 -0.0004 27 1 6.1577 0.8326 -0.0935 28 1 6.0770 -1.7767 1.0406 29 1 6.2071 -1.8946 -0.7307 30 1 9.2841 -3.7690 -1.8810 31 1 8.1477 -2.3683 1.9797 32 1 9.7197 -1.9862 1.0943 33 1 9.2313 0.4946 1.2972 34 1 7.6592 0.1131 2.1825 35 1 4.1158 -2.1390 0.0085 36 1 1.2571 -2.8158 -1.0272 37 1 0.4884 -2.3692 0.5149 38 1 2.0280 -3.2626 0.5138 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594705315.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:44 Heat of formation + Delta-G solvation = 12.563257 kcal Electronic energy + Delta-G solvation = -19262.325887 eV Core-core repulsion = 16322.816921 eV Total energy + Delta-G solvation = -2939.508966 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.72760 -38.84019 -37.42290 -36.21236 -34.01855 -33.17305 -32.06952 -28.42086 -28.04694 -27.35841 -25.43591 -23.04478 -22.97462 -21.40901 -21.00238 -18.38636 -17.78359 -17.18896 -16.65197 -16.23128 -15.83444 -15.53743 -15.10357 -14.87041 -14.52494 -14.27915 -14.24153 -13.62208 -13.48288 -13.40255 -13.34185 -13.02574 -12.82509 -12.80665 -12.41839 -12.32671 -12.08737 -12.03869 -11.92731 -11.69962 -11.46535 -10.93362 -10.51107 -10.47295 -10.09704 -9.52637 -8.17237 -8.13742 -6.25915 0.33548 0.63797 1.32884 1.38586 1.41258 1.49225 2.40162 2.56765 2.78244 3.14149 3.51319 3.87188 4.00897 4.18408 4.31939 4.37649 4.46514 4.53486 4.58002 4.74907 4.77773 4.79945 4.87634 4.92642 4.95972 4.99678 5.01390 5.18711 5.22528 5.26995 5.35381 5.43286 5.58680 5.61692 5.73185 5.77700 6.02063 6.34339 6.44013 6.77855 6.90234 7.42942 8.93271 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.018282 B = 0.004968 C = 0.004591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.166044 B = 5634.799554 C = 6097.641948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.151 4.151 3 C -0.060 4.060 4 C -0.137 4.137 5 Cl -0.083 7.083 6 C 0.215 3.785 7 N -0.727 5.727 8 C 0.187 3.813 9 C 0.004 3.996 10 C -0.509 4.509 11 H 0.049 0.951 12 C 0.031 3.969 13 N -0.901 5.901 14 Si 0.943 3.057 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.273 1.273 18 C -0.148 4.148 19 C -0.184 4.184 20 C -0.209 4.209 21 C -0.035 4.035 22 C -0.115 4.115 23 H 0.076 0.924 24 H 0.072 0.928 25 H 0.077 0.923 26 H 0.147 0.853 27 H 0.399 0.601 28 H 0.040 0.960 29 H 0.033 0.967 30 H 0.261 0.739 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.117 0.883 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.818 4.447 3.943 16.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.153 4.153 3 C -0.079 4.079 4 C -0.169 4.169 5 Cl -0.054 7.054 6 C 0.107 3.893 7 N -0.353 5.353 8 C 0.063 3.937 9 C 0.003 3.997 10 C -0.546 4.546 11 H 0.067 0.933 12 C -0.170 4.170 13 N -0.538 5.538 14 Si 0.770 3.230 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.198 1.198 18 C -0.186 4.186 19 C -0.221 4.221 20 C -0.232 4.232 21 C -0.036 4.036 22 C -0.171 4.171 23 H 0.094 0.906 24 H 0.091 0.909 25 H 0.096 0.904 26 H 0.165 0.835 27 H 0.235 0.765 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.135 0.865 36 H 0.099 0.901 37 H 0.110 0.890 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.631 4.179 3.872 16.637 hybrid contribution 1.627 0.367 -0.913 1.901 sum -14.004 4.546 2.959 15.018 Atomic orbital electron populations 1.20707 0.88459 1.03528 1.02877 1.19745 0.97621 0.90990 1.06951 1.20876 0.90293 0.99497 0.97267 1.20457 0.93083 0.84700 1.18642 1.98309 1.77495 1.32018 1.97625 1.17912 0.84362 0.93069 0.93926 1.44962 1.01887 1.09888 1.78580 1.20664 0.90924 0.84440 0.97675 1.19082 0.90447 1.00792 0.89399 1.20628 1.37194 0.92628 1.04170 0.93326 1.25563 0.96991 0.94932 0.99481 1.70103 1.42122 0.98446 1.43132 0.85785 0.79564 0.77643 0.80047 1.20077 1.21076 1.19823 1.22408 1.00329 0.93355 1.02494 1.22934 1.03020 0.94218 1.01942 1.20613 0.94700 0.95657 1.12239 1.19916 0.92061 0.96672 0.94918 1.20904 1.00405 0.92521 1.03259 0.90564 0.90931 0.90443 0.83519 0.76540 0.94235 0.94847 0.93004 0.90521 0.91849 0.90289 0.89653 0.86466 0.90100 0.89008 0.91587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.54 9.19 71.24 0.65 -0.89 16 2 C -0.15 -3.59 5.88 -19.84 -0.12 -3.71 16 3 C -0.06 -1.58 9.48 22.27 0.21 -1.37 16 4 C -0.14 -4.39 6.34 22.44 0.14 -4.25 16 5 Cl -0.08 -2.54 27.61 -2.72 -0.08 -2.62 16 6 C 0.21 7.74 6.64 38.21 0.25 8.00 16 7 N -0.73 -29.13 5.63 -339.29 -1.91 -31.04 16 8 C 0.19 8.32 4.82 86.38 0.42 8.73 16 9 C 0.00 0.17 1.38 -52.93 -0.07 0.10 16 10 C -0.51 -27.23 8.83 25.60 0.23 -27.00 16 11 H 0.05 2.64 7.83 -2.91 -0.02 2.62 16 12 C 0.03 1.69 5.36 84.65 0.45 2.15 16 13 N -0.90 -50.17 12.84 21.45 0.28 -49.90 16 14 Si 0.94 43.12 29.55 68.60 2.03 45.15 16 15 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 16 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 17 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 18 C -0.15 -6.74 9.25 30.59 0.28 -6.46 16 19 C -0.18 -7.70 9.91 30.59 0.30 -7.40 16 20 C -0.21 -6.98 8.95 22.40 0.20 -6.78 16 21 C -0.03 -0.92 5.88 -19.88 -0.12 -1.04 16 22 C -0.11 -2.22 9.19 71.23 0.65 -1.57 16 23 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.07 0.97 8.08 -2.38 -0.02 0.95 16 25 H 0.08 1.02 6.69 -2.39 -0.02 1.01 16 26 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 27 H 0.40 16.22 7.18 -92.71 -0.67 15.55 16 28 H 0.04 1.67 7.74 -2.39 -0.02 1.66 16 29 H 0.03 1.68 7.94 -2.38 -0.02 1.66 16 30 H 0.26 13.93 8.32 -92.71 -0.77 13.16 16 31 H 0.08 3.25 8.08 -2.39 -0.02 3.23 16 32 H 0.06 3.12 8.14 -2.38 -0.02 3.10 16 33 H 0.08 3.28 8.14 -2.38 -0.02 3.26 16 34 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 35 H 0.12 4.12 6.77 -2.91 -0.02 4.10 16 36 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 37 H 0.09 1.34 6.69 -2.39 -0.02 1.32 16 38 H 0.07 1.30 8.08 -2.39 -0.02 1.28 16 Total: -1.00 -57.90 330.23 4.20 -53.70 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: 0.39 Total: 26.20 kcal Atomic # 6 Polarization: -44.99 SS G_CDS: 3.49 Total: -41.50 kcal Atomic # 7 Polarization: -79.30 SS G_CDS: -1.63 Total: -80.94 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 17 Polarization: -2.54 SS G_CDS: -0.08 Total: -2.62 kcal Total: -57.90 4.20 -53.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594705315.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.263 kcal (2) G-P(sol) polarization free energy of solvation -57.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds