Wall clock time and date at job start Wed Apr 15 2020 11:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37673 * 119.98483 * 2 1 4 4 C 1.39754 * 119.97065 * 180.25222 * 3 2 1 5 5 C 1.43196 * 120.02346 * 179.76374 * 4 3 2 6 6 N 4.79868 * 134.62583 * 359.75826 * 2 1 3 7 7 C 1.39744 * 119.94873 * 359.74859 * 4 3 2 8 8 C 1.37673 * 119.97375 * 359.97438 * 7 4 3 9 9 C 1.50702 * 119.98138 * 180.02562 * 8 7 4 10 10 C 1.39523 * 120.02648 * 0.02562 * 8 7 4 11 11 C 1.48235 * 119.97284 * 179.97438 * 10 8 7 12 12 C 1.40049 * 119.98525 * 128.78052 * 11 10 8 13 13 N 1.32190 * 120.29092 * 179.97438 * 12 11 10 14 14 C 1.31880 * 120.28467 * 0.02562 * 13 12 11 15 15 C 1.40856 * 119.96650 * 0.02562 * 14 13 12 16 16 C 1.41339 * 120.14056 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99633 * 152.88973 * 16 15 14 18 18 C 1.40054 * 120.00245 * 332.89375 * 16 15 14 19 19 N 1.30721 * 119.99831 * 342.55716 * 18 16 15 20 20 Si 1.86800 * 119.99574 * 162.55152 * 18 16 15 21 21 H 1.48499 * 109.46818 * 94.97834 * 20 18 16 22 22 H 1.48504 * 109.46818 * 214.97147 * 20 18 16 23 23 H 1.48494 * 109.47539 * 334.97129 * 20 18 16 24 24 N 1.32556 * 119.99059 * 308.79633 * 11 10 8 25 25 H 1.09001 * 109.46946 * 265.01098 * 1 2 3 26 26 H 1.08992 * 109.47242 * 25.00776 * 1 2 3 27 27 H 1.09002 * 109.47187 * 145.01185 * 1 2 3 28 28 H 1.07996 * 120.01719 * 0.02562 * 3 2 1 29 29 H 1.07995 * 120.01117 * 180.02562 * 7 4 3 30 30 H 1.09004 * 109.46898 * 267.02110 * 9 8 7 31 31 H 1.08995 * 109.47275 * 27.02945 * 9 8 7 32 32 H 1.09008 * 109.46478 * 147.02824 * 9 8 7 33 33 H 1.07995 * 119.85656 * 359.71814 * 12 11 10 34 34 H 1.08001 * 120.01792 * 180.02562 * 14 13 12 35 35 H 0.97007 * 119.99698 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1951 1.1925 0.0000 4 6 3.5926 1.1921 -0.0053 5 6 4.3094 2.4318 -0.0104 6 7 4.8780 3.4152 -0.0144 7 6 4.2900 -0.0189 -0.0053 8 6 3.5997 -1.2101 0.0004 9 6 4.3516 -2.5161 0.0010 10 6 2.2045 -1.2085 0.0058 11 6 1.4625 -2.4917 0.0114 12 6 0.4580 -2.7153 0.9613 13 7 -0.2078 -3.8572 0.9716 14 6 0.0684 -4.7961 0.0876 15 6 1.0772 -4.5838 -0.8723 16 6 1.3766 -5.5877 -1.8211 17 1 1.7897 -5.3169 -2.7815 18 6 1.1377 -6.9335 -1.5158 19 7 0.9690 -7.3017 -0.2729 20 14 1.0599 -8.2021 -2.8847 21 1 2.3908 -8.8414 -3.0432 22 1 0.0511 -9.2371 -2.5436 23 1 0.6759 -7.5364 -4.1553 24 7 1.7501 -3.4274 -0.8825 25 1 -0.3633 -0.0894 1.0238 26 1 -0.3633 0.9312 -0.4344 27 1 -0.3634 -0.8419 -0.5893 28 1 1.6551 2.1278 0.0004 29 1 5.3699 -0.0203 -0.0090 30 1 4.4826 -2.8604 -1.0249 31 1 5.3279 -2.3731 0.4639 32 1 3.7877 -3.2596 0.5645 33 1 0.2292 -1.9530 1.6914 34 1 -0.4786 -5.7273 0.0996 35 1 0.8038 -8.2339 -0.0614 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222642939.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:56 Heat of formation + Delta-G solvation = 60.657482 kcal Electronic energy + Delta-G solvation = -20232.936927 eV Core-core repulsion = 17194.405989 eV Total energy + Delta-G solvation = -3038.530938 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.46948 -40.19495 -37.66420 -36.03013 -34.88632 -34.52767 -33.47336 -31.18276 -28.54042 -28.12751 -27.57067 -25.62168 -23.87237 -22.98165 -21.71028 -19.59665 -18.90296 -17.97928 -17.32710 -17.08579 -16.86731 -16.57207 -15.33207 -15.07476 -14.87007 -14.86476 -14.35155 -14.25747 -14.03386 -13.99566 -13.96065 -13.61649 -13.38923 -13.24970 -13.05757 -12.76142 -12.68927 -12.38405 -12.29322 -12.04289 -11.98281 -11.80341 -11.56393 -11.07564 -10.14203 -9.60526 -9.33344 -9.20748 -8.85286 -6.64791 -0.42628 0.36426 0.59962 0.92176 1.42435 1.50728 1.59250 1.59655 1.90182 2.18696 2.61499 2.79519 2.83892 3.46635 3.63419 3.80676 3.87688 4.07835 4.16815 4.29309 4.46519 4.47791 4.56622 4.64148 4.79098 4.82959 4.89040 4.90752 5.03608 5.08588 5.18490 5.23641 5.26280 5.38553 5.45373 5.67081 5.72415 5.82891 6.17894 6.42220 6.53860 6.57705 7.20665 7.68994 8.16769 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.027385 B = 0.004374 C = 0.004021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.225699 B = 6400.008031 C = 6961.633085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.067 4.067 3 C -0.063 4.063 4 C -0.026 4.026 5 C 0.288 3.712 6 N -0.459 5.459 7 C -0.068 4.068 8 C -0.064 4.064 9 C -0.098 4.098 10 C -0.016 4.016 11 C 0.135 3.865 12 C -0.082 4.082 13 N -0.453 5.453 14 C -0.016 4.016 15 C 0.206 3.794 16 C -0.454 4.454 17 H 0.086 0.914 18 C 0.043 3.957 19 N -0.811 5.811 20 Si 0.996 3.004 21 H -0.261 1.261 22 H -0.261 1.261 23 H -0.257 1.257 24 N -0.524 5.524 25 H 0.086 0.914 26 H 0.095 0.905 27 H 0.042 0.958 28 H 0.164 0.836 29 H 0.156 0.844 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.034 0.966 33 H 0.160 0.840 34 H 0.144 0.856 35 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.659 7.898 -0.174 8.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.068 4.068 3 C -0.084 4.084 4 C -0.029 4.029 5 C -0.027 4.027 6 N -0.135 5.135 7 C -0.089 4.089 8 C -0.065 4.065 9 C -0.155 4.155 10 C -0.018 4.018 11 C -0.009 4.009 12 C -0.240 4.240 13 N -0.165 5.165 14 C -0.184 4.184 15 C 0.078 3.922 16 C -0.487 4.487 17 H 0.104 0.896 18 C -0.176 4.176 19 N -0.436 5.436 20 Si 0.815 3.185 21 H -0.185 1.185 22 H -0.185 1.185 23 H -0.180 1.180 24 N -0.243 5.243 25 H 0.105 0.895 26 H 0.114 0.886 27 H 0.061 0.939 28 H 0.182 0.818 29 H 0.173 0.827 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.053 0.947 33 H 0.177 0.823 34 H 0.161 0.839 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.489 9.232 0.002 9.562 hybrid contribution -0.303 -1.437 -0.262 1.491 sum 2.186 7.795 -0.259 8.100 Atomic orbital electron populations 1.20890 0.89450 1.03126 1.03338 1.19895 0.97166 0.90794 0.98914 1.21085 0.91416 0.98410 0.97440 1.15939 0.92406 0.86229 1.08346 1.25604 0.92431 0.92344 0.92300 1.81263 1.09651 1.11944 1.10625 1.21032 1.00947 0.89003 0.97887 1.19868 0.92208 0.95964 0.98442 1.20629 0.99405 0.93008 1.02424 1.18748 0.92840 0.90774 0.99417 1.20781 0.93859 0.93308 0.92971 1.23146 1.00429 0.96899 1.03486 1.67864 1.25574 1.01313 1.21798 1.23551 0.99541 0.98621 0.96702 1.19575 0.89079 0.90642 0.92926 1.19576 1.37747 0.90497 1.00867 0.89582 1.26868 0.90583 1.01213 0.98942 1.69755 1.31982 1.21008 1.20860 0.84975 0.79490 0.76336 0.77690 1.18519 1.18486 1.18006 1.69130 1.26720 1.02870 1.25571 0.89540 0.88606 0.93867 0.81829 0.82667 0.91360 0.89300 0.94715 0.82307 0.83908 0.88963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.65 8.44 71.24 0.60 -2.04 16 2 C -0.07 -1.74 5.87 -19.68 -0.12 -1.86 16 3 C -0.06 -1.30 9.37 22.50 0.21 -1.09 16 4 C -0.03 -0.55 5.74 -21.30 -0.12 -0.67 16 5 C 0.29 6.53 15.32 88.33 1.35 7.89 16 6 N -0.46 -12.24 18.54 19.00 0.35 -11.89 16 7 C -0.07 -1.57 9.37 22.50 0.21 -1.36 16 8 C -0.06 -1.91 5.90 -19.69 -0.12 -2.03 16 9 C -0.10 -3.12 8.87 71.24 0.63 -2.49 16 10 C -0.02 -0.52 5.60 -20.00 -0.11 -0.63 16 11 C 0.14 5.75 4.52 42.13 0.19 5.94 16 12 C -0.08 -3.51 9.24 85.08 0.79 -2.72 16 13 N -0.45 -22.18 10.47 -192.01 -2.01 -24.19 16 14 C -0.02 -0.81 9.86 85.33 0.84 0.03 16 15 C 0.21 10.81 6.38 40.25 0.26 11.07 16 16 C -0.45 -23.12 9.28 23.47 0.22 -22.90 16 17 H 0.09 4.31 7.91 -2.91 -0.02 4.28 16 18 C 0.04 1.98 5.12 85.30 0.44 2.42 16 19 N -0.81 -39.04 11.10 21.84 0.24 -38.80 16 20 Si 1.00 34.68 29.59 68.60 2.03 36.71 16 21 H -0.26 -8.76 7.11 99.48 0.71 -8.05 16 22 H -0.26 -8.54 7.11 99.48 0.71 -7.83 16 23 H -0.26 -8.84 7.11 99.48 0.71 -8.13 16 24 N -0.52 -25.64 9.06 -177.67 -1.61 -27.25 16 25 H 0.09 1.86 7.25 -2.39 -0.02 1.85 16 26 H 0.10 1.64 8.05 -2.39 -0.02 1.62 16 27 H 0.04 1.31 6.86 -2.39 -0.02 1.29 16 28 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 29 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 30 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 31 H 0.09 2.16 8.06 -2.39 -0.02 2.14 16 32 H 0.03 1.35 6.91 -2.38 -0.02 1.33 16 33 H 0.16 5.71 6.83 -2.91 -0.02 5.69 16 34 H 0.14 7.61 6.33 -2.91 -0.02 7.60 16 35 H 0.30 12.79 8.29 -92.70 -0.77 12.02 16 Total: -1.00 -60.14 309.72 5.41 -54.73 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: 1.14 Total: 21.15 kcal Atomic # 6 Polarization: -15.73 SS G_CDS: 5.27 Total: -10.46 kcal Atomic # 7 Polarization: -99.11 SS G_CDS: -3.03 Total: -102.13 kcal Atomic # 14 Polarization: 34.68 SS G_CDS: 2.03 Total: 36.71 kcal Total: -60.14 5.41 -54.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222642939.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.388 kcal (2) G-P(sol) polarization free energy of solvation -60.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds