Wall clock time and date at job start Wed Apr 15 2020 11:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37926 * 119.89167 * 2 1 4 4 C 1.38419 * 120.79341 * 180.02562 * 3 2 1 5 5 C 1.39189 * 120.35368 * 0.02562 * 4 3 2 6 6 C 1.47410 * 120.29725 * 179.97438 * 5 4 3 7 7 N 1.32760 * 120.00508 * 130.58454 * 6 5 4 8 8 C 1.31652 * 121.70150 * 179.97438 * 7 6 5 9 9 C 1.38954 * 121.53397 * 0.02562 * 8 7 6 10 10 C 1.36828 * 119.83395 * 359.97438 * 9 8 7 11 11 C 1.41162 * 118.40342 * 359.74891 * 10 9 8 12 12 C 1.40766 * 120.73137 * 180.25124 * 11 10 9 13 13 H 1.07993 * 120.00688 * 149.19555 * 12 11 10 14 14 C 1.40065 * 119.99213 * 329.19115 * 12 11 10 15 15 N 1.30781 * 120.00344 * 348.60293 * 14 12 11 16 16 Si 1.86801 * 119.99436 * 168.60325 * 14 12 11 17 17 H 1.48498 * 109.47572 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46840 * 120.00175 * 16 14 12 19 19 H 1.48501 * 109.47196 * 240.00128 * 16 14 12 20 20 C 1.41410 * 119.40163 * 0.02562 * 5 4 3 21 21 C 1.41132 * 133.55621 * 179.97438 * 20 5 4 22 22 N 1.30305 * 108.70580 * 180.02562 * 21 20 5 23 23 N 1.40035 * 109.68276 * 0.02562 * 22 21 20 24 24 H 0.96996 * 125.97593 * 180.02562 * 23 22 21 25 25 C 1.37195 * 108.03096 * 0.02562 * 23 22 21 26 26 H 1.08998 * 109.46896 * 269.94524 * 1 2 3 27 27 H 1.09002 * 109.46720 * 29.94722 * 1 2 3 28 28 H 1.09002 * 109.46826 * 149.94488 * 1 2 3 29 29 H 1.08001 * 119.59809 * 0.05312 * 3 2 1 30 30 H 1.08000 * 119.82369 * 180.29295 * 4 3 2 31 31 H 1.07998 * 119.23563 * 179.97438 * 8 7 6 32 32 H 1.07999 * 120.08318 * 179.97438 * 9 8 7 33 33 H 1.07998 * 120.80050 * 180.02562 * 10 9 8 34 34 H 0.96998 * 119.99542 * 179.97438 * 15 14 12 35 35 H 1.07996 * 125.64403 * 0.02562 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.1958 0.0000 4 6 3.5784 1.2176 -0.0005 5 6 4.3006 0.0277 -0.0016 6 6 5.7745 0.0523 -0.0027 7 7 6.4515 -0.6848 0.8695 8 6 7.7677 -0.6885 0.8978 9 6 8.5158 0.0806 0.0148 10 6 7.8820 0.8641 -0.9108 11 6 6.4707 0.8599 -0.9407 12 6 5.7687 1.6434 -1.8761 13 1 4.8110 1.3112 -2.2483 14 6 6.3126 2.8540 -2.3239 15 7 7.3521 3.3675 -1.7189 16 14 5.5528 3.7350 -3.7854 17 1 4.3948 2.9529 -4.2878 18 1 5.0942 5.0839 -3.3665 19 1 6.5652 3.8692 -4.8635 20 6 3.6076 -1.2050 -0.0027 21 6 4.0227 -2.5539 -0.0044 22 7 2.9659 -3.3163 -0.0054 23 7 1.8120 -2.5229 -0.0050 24 1 0.8977 -2.8469 -0.0052 25 6 2.2012 -1.2073 -0.0043 26 1 -0.3633 -0.0010 1.0277 27 1 -0.3633 0.8905 -0.5130 28 1 -0.3633 -0.8895 -0.5147 29 1 1.6461 2.1262 0.0009 30 1 4.1007 2.1629 0.0043 31 1 8.2780 -1.3031 1.6246 32 1 9.5946 0.0601 0.0590 33 1 8.4480 1.4678 -1.6048 34 1 7.7289 4.2056 -2.0294 35 1 5.0465 -2.8974 -0.0048 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236472685.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:03 Heat of formation + Delta-G solvation = 101.552332 kcal Electronic energy + Delta-G solvation = -20826.553462 eV Core-core repulsion = 17789.795858 eV Total energy + Delta-G solvation = -3036.757604 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.88796 -38.47010 -36.57948 -34.18466 -33.33730 -30.71075 -30.46299 -29.57902 -29.12700 -26.46178 -25.33467 -22.46929 -21.83285 -21.50564 -21.01725 -20.08818 -17.45009 -17.02854 -15.98174 -15.62255 -14.99850 -14.59900 -14.42223 -14.25054 -14.01147 -13.67718 -13.16904 -13.02903 -12.73372 -12.44448 -12.01496 -11.92423 -11.58265 -11.42040 -11.17891 -11.06327 -10.89555 -10.74250 -10.55423 -10.39703 -9.85304 -9.63652 -9.48751 -8.40720 -8.12336 -8.07346 -7.68813 -7.10965 -6.88754 -4.57913 1.33355 2.10493 2.56066 2.86639 2.97932 3.04055 3.08144 3.12335 3.19048 3.78793 4.38481 4.52614 5.09297 5.18147 5.28655 5.42462 5.49616 5.65111 5.74896 5.78588 5.90537 5.98385 6.16766 6.22351 6.37514 6.49105 6.60310 6.65526 6.79132 6.92586 6.98687 7.02331 7.19934 7.32351 7.47185 7.64130 7.76854 7.79751 7.84165 8.07968 8.32467 8.54435 8.61218 9.49805 9.96039 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.015015 B = 0.007445 C = 0.005440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.324723 B = 3760.140077 C = 5145.506095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.147 4.147 3 C -0.064 4.064 4 C -0.140 4.140 5 C 0.108 3.892 6 C 0.006 3.994 7 N -0.448 5.448 8 C -0.028 4.028 9 C -0.149 4.149 10 C -0.123 4.123 11 C 0.091 3.909 12 C -0.437 4.437 13 H 0.089 0.911 14 C 0.074 3.926 15 N -0.789 5.789 16 Si 0.909 3.091 17 H -0.257 1.257 18 H -0.271 1.271 19 H -0.271 1.271 20 C -0.164 4.164 21 C 0.102 3.898 22 N -0.280 5.280 23 N -0.520 5.520 24 H 0.432 0.568 25 C 0.129 3.871 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.050 0.950 29 H 0.122 0.878 30 H 0.135 0.865 31 H 0.122 0.878 32 H 0.099 0.901 33 H 0.124 0.876 34 H 0.284 0.716 35 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.230 -1.671 0.149 7.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.152 4.152 3 C -0.085 4.085 4 C -0.160 4.160 5 C 0.104 3.896 6 C -0.132 4.132 7 N -0.156 5.156 8 C -0.190 4.190 9 C -0.169 4.169 10 C -0.149 4.149 11 C 0.086 3.914 12 C -0.466 4.466 13 H 0.107 0.893 14 C -0.145 4.145 15 N -0.414 5.414 16 Si 0.733 3.267 17 H -0.180 1.180 18 H -0.196 1.196 19 H -0.196 1.196 20 C -0.172 4.172 21 C -0.093 4.093 22 N -0.094 5.094 23 N -0.235 5.235 24 H 0.276 0.724 25 C 0.013 3.987 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.140 0.860 30 H 0.152 0.848 31 H 0.140 0.860 32 H 0.117 0.883 33 H 0.142 0.858 34 H 0.095 0.905 35 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -7.958 -3.213 0.727 8.613 hybrid contribution 0.278 1.738 -1.226 2.145 sum -7.680 -1.475 -0.499 7.836 Atomic orbital electron populations 1.20559 0.91829 1.01882 1.01357 1.18674 0.94875 0.90046 1.11616 1.20713 0.94130 0.95994 0.97669 1.21113 0.92788 0.98358 1.03739 1.17958 0.91009 0.90031 0.90584 1.19470 0.90816 1.04847 0.98026 1.67114 1.09165 1.18100 1.21175 1.21703 0.89471 1.04881 1.02943 1.21461 0.99007 0.98571 0.97885 1.21377 0.94593 0.99326 0.99629 1.18331 0.92197 0.90158 0.90720 1.19589 1.05175 1.02421 1.19457 0.89345 1.25983 0.94162 0.97569 0.96750 1.69750 1.18958 1.17378 1.35303 0.86209 0.80294 0.79384 0.80790 1.18001 1.19645 1.19599 1.18894 0.91579 0.94183 1.12581 1.23787 0.98065 0.90554 0.96910 1.76658 0.91693 1.19510 1.21566 1.45878 1.07294 1.01917 1.68409 0.72437 1.18557 0.93884 0.85819 1.00425 0.92128 0.91619 0.93062 0.86001 0.84751 0.86025 0.88263 0.85781 0.90455 0.79662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.18 10.01 36.01 0.36 -0.82 16 2 C -0.15 -2.38 5.90 -104.35 -0.62 -2.99 16 3 C -0.06 -1.08 9.64 -39.63 -0.38 -1.46 16 4 C -0.14 -2.80 8.06 -39.16 -0.32 -3.12 16 5 C 0.11 2.37 5.11 -104.60 -0.53 1.84 16 6 C 0.01 0.13 6.25 -82.29 -0.51 -0.38 16 7 N -0.45 -10.51 10.03 -9.21 -0.09 -10.61 16 8 C -0.03 -0.61 11.16 -17.36 -0.19 -0.81 16 9 C -0.15 -3.25 10.03 -39.83 -0.40 -3.65 16 10 C -0.12 -2.97 8.70 -38.98 -0.34 -3.31 16 11 C 0.09 2.25 5.52 -106.39 -0.59 1.66 16 12 C -0.44 -10.54 6.96 -37.94 -0.26 -10.81 16 13 H 0.09 2.12 6.87 -52.49 -0.36 1.76 16 14 C 0.07 1.70 5.25 -17.31 -0.09 1.61 16 15 N -0.79 -18.66 11.06 55.55 0.61 -18.04 16 16 Si 0.91 17.37 29.58 -169.99 -5.03 12.34 16 17 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 18 H -0.27 -5.10 7.11 56.52 0.40 -4.69 16 19 H -0.27 -5.13 7.11 56.52 0.40 -4.72 16 20 C -0.16 -3.39 5.97 -106.68 -0.64 -4.03 16 21 C 0.10 2.00 11.65 -17.10 -0.20 1.80 16 22 N -0.28 -5.13 12.58 30.80 0.39 -4.74 16 23 N -0.52 -8.48 7.45 32.35 0.24 -8.23 16 24 H 0.43 5.44 8.90 -182.65 -1.63 3.81 16 25 C 0.13 2.33 6.98 -84.18 -0.59 1.75 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 28 H 0.05 0.55 8.02 -51.93 -0.42 0.13 16 29 H 0.12 1.67 8.06 -52.49 -0.42 1.24 16 30 H 0.13 2.81 7.28 -52.49 -0.38 2.42 16 31 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 32 H 0.10 1.87 8.06 -52.49 -0.42 1.44 16 33 H 0.12 3.03 6.51 -52.49 -0.34 2.69 16 34 H 0.28 6.11 8.29 -40.82 -0.34 5.77 16 35 H 0.19 3.49 8.06 -52.49 -0.42 3.07 16 LS Contribution 303.52 15.07 4.57 4.57 Total: -1.00 -27.24 303.52 -9.40 -36.64 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -4.79 Total: 10.78 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: -5.30 Total: -22.71 kcal Atomic # 7 Polarization: -42.77 SS G_CDS: 1.15 Total: -41.62 kcal Atomic # 14 Polarization: 17.37 SS G_CDS: -5.03 Total: 12.34 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -27.24 -9.40 -36.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236472685.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.193 kcal (2) G-P(sol) polarization free energy of solvation -27.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds