Wall clock time and date at job start Wed Apr 15 2020 11:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37926 * 119.89167 * 2 1 4 4 C 1.38419 * 120.79341 * 180.02562 * 3 2 1 5 5 C 1.39189 * 120.35368 * 0.02562 * 4 3 2 6 6 C 1.47410 * 120.29725 * 179.97438 * 5 4 3 7 7 N 1.32760 * 120.00508 * 130.58454 * 6 5 4 8 8 C 1.31652 * 121.70150 * 179.97438 * 7 6 5 9 9 C 1.38954 * 121.53397 * 0.02562 * 8 7 6 10 10 C 1.36828 * 119.83395 * 359.97438 * 9 8 7 11 11 C 1.41162 * 118.40342 * 359.74891 * 10 9 8 12 12 C 1.40766 * 120.73137 * 180.25124 * 11 10 9 13 13 H 1.07993 * 120.00688 * 149.19555 * 12 11 10 14 14 C 1.40065 * 119.99213 * 329.19115 * 12 11 10 15 15 N 1.30781 * 120.00344 * 348.60293 * 14 12 11 16 16 Si 1.86801 * 119.99436 * 168.60325 * 14 12 11 17 17 H 1.48498 * 109.47572 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46840 * 120.00175 * 16 14 12 19 19 H 1.48501 * 109.47196 * 240.00128 * 16 14 12 20 20 C 1.41410 * 119.40163 * 0.02562 * 5 4 3 21 21 C 1.41132 * 133.55621 * 179.97438 * 20 5 4 22 22 N 1.30305 * 108.70580 * 180.02562 * 21 20 5 23 23 N 1.40035 * 109.68276 * 0.02562 * 22 21 20 24 24 H 0.96996 * 125.97593 * 180.02562 * 23 22 21 25 25 C 1.37195 * 108.03096 * 0.02562 * 23 22 21 26 26 H 1.08998 * 109.46896 * 269.94524 * 1 2 3 27 27 H 1.09002 * 109.46720 * 29.94722 * 1 2 3 28 28 H 1.09002 * 109.46826 * 149.94488 * 1 2 3 29 29 H 1.08001 * 119.59809 * 0.05312 * 3 2 1 30 30 H 1.08000 * 119.82369 * 180.29295 * 4 3 2 31 31 H 1.07998 * 119.23563 * 179.97438 * 8 7 6 32 32 H 1.07999 * 120.08318 * 179.97438 * 9 8 7 33 33 H 1.07998 * 120.80050 * 180.02562 * 10 9 8 34 34 H 0.96998 * 119.99542 * 179.97438 * 15 14 12 35 35 H 1.07996 * 125.64403 * 0.02562 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.1958 0.0000 4 6 3.5784 1.2176 -0.0005 5 6 4.3006 0.0277 -0.0016 6 6 5.7745 0.0523 -0.0027 7 7 6.4515 -0.6848 0.8695 8 6 7.7677 -0.6885 0.8978 9 6 8.5158 0.0806 0.0148 10 6 7.8820 0.8641 -0.9108 11 6 6.4707 0.8599 -0.9407 12 6 5.7687 1.6434 -1.8761 13 1 4.8110 1.3112 -2.2483 14 6 6.3126 2.8540 -2.3239 15 7 7.3521 3.3675 -1.7189 16 14 5.5528 3.7350 -3.7854 17 1 4.3948 2.9529 -4.2878 18 1 5.0942 5.0839 -3.3665 19 1 6.5652 3.8692 -4.8635 20 6 3.6076 -1.2050 -0.0027 21 6 4.0227 -2.5539 -0.0044 22 7 2.9659 -3.3163 -0.0054 23 7 1.8120 -2.5229 -0.0050 24 1 0.8977 -2.8469 -0.0052 25 6 2.2012 -1.2073 -0.0043 26 1 -0.3633 -0.0010 1.0277 27 1 -0.3633 0.8905 -0.5130 28 1 -0.3633 -0.8895 -0.5147 29 1 1.6461 2.1262 0.0009 30 1 4.1007 2.1629 0.0043 31 1 8.2780 -1.3031 1.6246 32 1 9.5946 0.0601 0.0590 33 1 8.4480 1.4678 -1.6048 34 1 7.7289 4.2056 -2.0294 35 1 5.0465 -2.8974 -0.0048 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236472685.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:02 Heat of formation + Delta-G solvation = 86.891579 kcal Electronic energy + Delta-G solvation = -20827.189200 eV Core-core repulsion = 17789.795858 eV Total energy + Delta-G solvation = -3037.393342 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.32606 -40.19900 -38.00230 -35.93268 -34.76337 -32.48371 -32.01497 -30.99142 -30.57643 -27.99107 -26.91179 -23.94333 -23.44126 -23.12326 -22.56974 -21.57760 -19.22322 -18.55019 -17.46376 -17.24893 -16.55109 -16.23242 -15.88576 -15.73486 -15.53511 -15.19207 -14.57329 -14.28321 -14.11848 -14.02967 -13.61861 -13.32265 -13.13961 -13.06488 -12.78956 -12.43327 -12.34331 -12.18799 -12.03690 -11.88366 -11.53001 -11.18892 -11.05916 -10.16993 -9.90165 -9.61755 -9.32978 -8.72628 -8.46337 -6.38370 -0.14405 0.60080 0.88387 1.13674 1.40713 1.51054 1.54606 1.63124 1.87444 2.19830 2.75150 2.93063 3.65475 3.68570 3.84057 4.05142 4.07826 4.25702 4.40646 4.52371 4.61726 4.65860 4.81551 4.89054 4.90801 4.97906 5.04958 5.12663 5.20784 5.27718 5.37437 5.53369 5.65759 5.77093 5.86465 5.95485 6.06516 6.11173 6.47562 6.52984 6.68943 6.76488 6.83264 7.72419 8.27252 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.015015 B = 0.007445 C = 0.005440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.324723 B = 3760.140077 C = 5145.506095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.128 4.128 3 C -0.067 4.067 4 C -0.145 4.145 5 C 0.068 3.932 6 C -0.001 4.001 7 N -0.464 5.464 8 C -0.034 4.034 9 C -0.148 4.148 10 C -0.147 4.147 11 C 0.062 3.938 12 C -0.455 4.455 13 H 0.080 0.920 14 C 0.040 3.960 15 N -0.820 5.820 16 Si 0.976 3.024 17 H -0.258 1.258 18 H -0.262 1.262 19 H -0.266 1.266 20 C -0.186 4.186 21 C 0.085 3.915 22 N -0.277 5.277 23 N -0.500 5.500 24 H 0.451 0.549 25 C 0.121 3.879 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.066 0.934 29 H 0.158 0.842 30 H 0.115 0.885 31 H 0.153 0.847 32 H 0.130 0.870 33 H 0.113 0.887 34 H 0.292 0.708 35 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.685 -1.528 -0.010 9.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.132 4.132 3 C -0.087 4.087 4 C -0.165 4.165 5 C 0.065 3.935 6 C -0.138 4.138 7 N -0.171 5.171 8 C -0.195 4.195 9 C -0.168 4.168 10 C -0.173 4.173 11 C 0.057 3.943 12 C -0.484 4.484 13 H 0.098 0.902 14 C -0.176 4.176 15 N -0.445 5.445 16 Si 0.797 3.203 17 H -0.182 1.182 18 H -0.186 1.186 19 H -0.190 1.190 20 C -0.194 4.194 21 C -0.110 4.110 22 N -0.092 5.092 23 N -0.218 5.218 24 H 0.298 0.702 25 C 0.004 3.996 26 H 0.097 0.903 27 H 0.104 0.896 28 H 0.085 0.915 29 H 0.176 0.824 30 H 0.133 0.867 31 H 0.170 0.830 32 H 0.147 0.853 33 H 0.131 0.869 34 H 0.103 0.897 35 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -10.423 -3.094 0.583 10.888 hybrid contribution 0.961 1.607 -1.081 2.162 sum -9.462 -1.487 -0.497 9.591 Atomic orbital electron populations 1.20685 0.88018 1.03756 1.03095 1.19205 0.97437 0.88690 1.07902 1.21056 0.92761 0.97988 0.96942 1.21104 0.94428 0.96984 1.04030 1.18022 0.90258 0.91375 0.93880 1.19856 0.92227 1.04254 0.97507 1.67194 1.09947 1.18545 1.21444 1.22270 0.89312 1.04733 1.03211 1.21746 1.00610 0.97528 0.96915 1.21414 0.94652 1.00495 1.00704 1.18678 0.92868 0.91159 0.91562 1.19600 1.05182 1.03326 1.20333 0.90189 1.26701 0.94419 0.97698 0.98754 1.69790 1.20079 1.18078 1.36534 0.85227 0.79333 0.78328 0.77462 1.18183 1.18644 1.19048 1.19072 0.93103 0.94017 1.13245 1.23754 0.98380 0.90586 0.98310 1.76589 0.92015 1.19688 1.20956 1.45843 1.07738 1.01164 1.67055 0.70191 1.18783 0.93106 0.87027 1.00667 0.90251 0.89564 0.91516 0.82429 0.86664 0.83004 0.85260 0.86865 0.89729 0.80075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.86 10.01 71.24 0.71 -1.15 16 2 C -0.13 -3.74 5.90 -19.69 -0.12 -3.86 16 3 C -0.07 -2.12 9.64 22.24 0.21 -1.90 16 4 C -0.14 -5.90 8.06 22.54 0.18 -5.72 16 5 C 0.07 3.10 5.11 -19.85 -0.10 3.00 16 6 C 0.00 -0.06 6.25 42.36 0.26 0.21 16 7 N -0.46 -22.35 10.03 -183.06 -1.84 -24.19 16 8 C -0.03 -1.50 11.16 84.89 0.95 -0.55 16 9 C -0.15 -6.54 10.03 22.11 0.22 -6.32 16 10 C -0.15 -7.33 8.70 22.66 0.20 -7.14 16 11 C 0.06 3.21 5.52 -21.01 -0.12 3.10 16 12 C -0.46 -22.86 6.96 23.33 0.16 -22.70 16 13 H 0.08 4.02 6.87 -2.91 -0.02 4.00 16 14 C 0.04 1.89 5.25 85.29 0.45 2.34 16 15 N -0.82 -39.82 11.06 21.85 0.24 -39.58 16 16 Si 0.98 35.81 29.58 68.60 2.03 37.84 16 17 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 18 H -0.26 -9.14 7.11 99.48 0.71 -8.44 16 19 H -0.27 -9.46 7.11 99.48 0.71 -8.75 16 20 C -0.19 -7.74 5.97 -21.20 -0.13 -7.87 16 21 C 0.08 3.35 11.65 85.63 1.00 4.35 16 22 N -0.28 -9.90 12.58 -56.46 -0.71 -10.61 16 23 N -0.50 -15.18 7.45 -51.56 -0.38 -15.57 16 24 H 0.45 9.86 8.90 -213.37 -1.90 7.96 16 25 C 0.12 4.16 6.98 39.14 0.27 4.44 16 26 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.09 1.34 8.08 -2.39 -0.02 1.32 16 28 H 0.07 1.09 8.02 -2.39 -0.02 1.07 16 29 H 0.16 3.77 8.06 -2.91 -0.02 3.75 16 30 H 0.12 5.03 7.28 -2.91 -0.02 5.01 16 31 H 0.15 5.59 8.06 -2.91 -0.02 5.57 16 32 H 0.13 4.78 8.06 -2.91 -0.02 4.76 16 33 H 0.11 5.79 6.51 -2.91 -0.02 5.77 16 34 H 0.29 12.77 8.29 -92.71 -0.77 12.00 16 35 H 0.18 7.11 8.06 -2.91 -0.02 7.09 16 Total: -1.00 -60.98 303.52 2.74 -58.24 By element: Atomic # 1 Polarization: 34.41 SS G_CDS: -0.76 Total: 33.65 kcal Atomic # 6 Polarization: -43.95 SS G_CDS: 4.16 Total: -39.79 kcal Atomic # 7 Polarization: -87.25 SS G_CDS: -2.69 Total: -89.94 kcal Atomic # 14 Polarization: 35.81 SS G_CDS: 2.03 Total: 37.84 kcal Total: -60.98 2.74 -58.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236472685.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.128 kcal (2) G-P(sol) polarization free energy of solvation -60.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds