Wall clock time and date at job start Wed Apr 15 2020 11:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37894 * 119.90000 * 2 1 4 4 C 1.38457 * 120.78577 * 180.02562 * 3 2 1 5 5 C 1.39106 * 120.35895 * 359.77424 * 4 3 2 6 6 C 1.47582 * 120.28859 * 180.02562 * 5 4 3 7 7 C 1.40073 * 119.46743 * 0.17196 * 6 5 4 8 8 C 1.36506 * 119.46005 * 179.72275 * 7 6 5 9 9 C 1.41362 * 118.42646 * 0.53639 * 8 7 6 10 10 C 1.40951 * 120.54222 * 179.74320 * 9 8 7 11 11 H 1.08000 * 120.00052 * 330.30335 * 10 9 8 12 12 C 1.40003 * 119.99688 * 150.29912 * 10 9 8 13 13 N 1.30801 * 120.00197 * 161.80534 * 12 10 9 14 14 Si 1.86802 * 120.00460 * 341.80664 * 12 10 9 15 15 H 1.48497 * 109.47207 * 95.40814 * 14 12 10 16 16 H 1.48495 * 109.47474 * 215.41258 * 14 12 10 17 17 H 1.48508 * 109.46727 * 335.40753 * 14 12 10 18 18 C 1.41009 * 118.91508 * 359.72885 * 9 8 7 19 19 N 1.31203 * 120.41537 * 359.97438 * 18 9 8 20 20 C 1.41346 * 119.41251 * 0.44411 * 5 4 3 21 21 C 1.41160 * 133.54480 * 179.87386 * 20 5 4 22 22 N 1.30296 * 108.70090 * 179.71222 * 21 20 5 23 23 N 1.40030 * 109.68758 * 0.02562 * 22 21 20 24 24 H 0.97003 * 125.98501 * 179.97438 * 23 22 21 25 25 C 1.37201 * 108.03903 * 359.97438 * 23 22 21 26 26 H 1.08998 * 109.47205 * 269.97449 * 1 2 3 27 27 H 1.08997 * 109.46900 * 29.97989 * 1 2 3 28 28 H 1.08999 * 109.47080 * 149.97813 * 1 2 3 29 29 H 1.07998 * 119.60894 * 0.04502 * 3 2 1 30 30 H 1.08006 * 119.81895 * 180.02562 * 4 3 2 31 31 H 1.08004 * 120.27070 * 359.97438 * 7 6 5 32 32 H 1.07999 * 120.78653 * 180.24493 * 8 7 6 33 33 H 0.97000 * 120.00559 * 180.02562 * 13 12 10 34 34 H 1.08001 * 119.79579 * 179.97438 * 18 9 8 35 35 H 1.08003 * 125.65577 * 359.69398 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.1954 0.0000 4 6 3.5788 1.2168 -0.0005 5 6 4.3004 0.0275 0.0037 6 6 5.7760 0.0521 0.0036 7 6 6.4446 1.2830 0.0031 8 6 7.8094 1.3056 0.0088 9 6 8.5029 0.0738 0.0036 10 6 9.9121 0.0451 0.0037 11 1 10.4686 0.8484 -0.4560 12 6 10.5904 -1.0247 0.5999 13 7 11.8451 -1.2489 0.3061 14 14 9.7036 -2.1321 1.8152 15 1 9.1848 -3.3295 1.1065 16 1 10.6489 -2.5572 2.8786 17 1 8.5720 -1.3898 2.4267 18 6 7.7618 -1.1258 -0.0015 19 7 6.4501 -1.0962 -0.0009 20 6 3.6077 -1.2046 -0.0011 21 6 4.0231 -2.5537 -0.0011 22 7 2.9665 -3.3162 -0.0006 23 7 1.8125 -2.5231 -0.0008 24 1 0.8982 -2.8471 -0.0009 25 6 2.2012 -1.2073 -0.0009 26 1 -0.3633 -0.0005 1.0276 27 1 -0.3633 0.8901 -0.5135 28 1 -0.3633 -0.8898 -0.5142 29 1 1.6464 2.1260 0.0007 30 1 4.1013 2.1621 -0.0001 31 1 5.8848 2.2067 0.0022 32 1 8.3468 2.2424 0.0124 33 1 12.3149 -1.9904 0.7188 34 1 8.2770 -2.0750 -0.0060 35 1 5.0471 -2.8972 -0.0018 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236476962.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:06 Heat of formation + Delta-G solvation = 103.170913 kcal Electronic energy + Delta-G solvation = -20331.074754 eV Core-core repulsion = 17294.387337 eV Total energy + Delta-G solvation = -3036.687417 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.03810 -38.76659 -36.83497 -34.43567 -33.25522 -31.53169 -30.77191 -29.90863 -29.31881 -27.21057 -24.66084 -22.94927 -22.37523 -21.37521 -21.09108 -20.32024 -17.91475 -17.32983 -16.11875 -16.06187 -15.09594 -14.75272 -14.64335 -14.37278 -14.05861 -13.76703 -13.22251 -13.17769 -13.13769 -12.87919 -12.45790 -12.21814 -11.87367 -11.50686 -11.37306 -11.15542 -10.99821 -10.76125 -10.67035 -10.46012 -10.16726 -9.84410 -9.52973 -8.75167 -8.41630 -8.29113 -8.04039 -7.32923 -7.15112 -4.76575 1.01710 1.79695 2.45556 2.55025 2.96414 2.98970 3.07433 3.08103 3.15319 3.73337 4.03788 4.48435 4.91355 5.00732 5.15466 5.24565 5.28419 5.31263 5.58039 5.58979 5.71328 5.76015 5.80780 6.06782 6.12422 6.16216 6.27340 6.43018 6.43503 6.70870 6.77155 6.78881 6.96056 7.00501 7.16096 7.35672 7.42067 7.62909 7.71703 7.90789 8.00080 8.21862 8.34301 9.22721 9.65638 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.027599 B = 0.004911 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.299868 B = 5699.879245 C = 6512.402090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.154 4.154 3 C -0.055 4.055 4 C -0.186 4.186 5 C 0.101 3.899 6 C -0.019 4.019 7 C -0.094 4.094 8 C -0.186 4.186 9 C 0.047 3.953 10 C -0.407 4.407 11 H 0.099 0.901 12 C 0.080 3.920 13 N -0.779 5.779 14 Si 0.911 3.089 15 H -0.259 1.259 16 H -0.283 1.283 17 H -0.243 1.243 18 C -0.024 4.024 19 N -0.431 5.431 20 C -0.169 4.169 21 C 0.108 3.892 22 N -0.284 5.284 23 N -0.519 5.519 24 H 0.433 0.567 25 C 0.136 3.864 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.051 0.949 29 H 0.122 0.878 30 H 0.125 0.875 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.294 0.706 34 H 0.134 0.866 35 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.513 2.060 0.897 13.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.159 4.159 3 C -0.076 4.076 4 C -0.207 4.207 5 C 0.097 3.903 6 C -0.151 4.151 7 C -0.114 4.114 8 C -0.211 4.211 9 C 0.042 3.958 10 C -0.434 4.434 11 H 0.117 0.883 12 C -0.143 4.143 13 N -0.400 5.400 14 Si 0.736 3.264 15 H -0.185 1.185 16 H -0.210 1.210 17 H -0.166 1.166 18 C -0.191 4.191 19 N -0.138 5.138 20 C -0.177 4.177 21 C -0.087 4.087 22 N -0.099 5.099 23 N -0.233 5.233 24 H 0.276 0.724 25 C 0.019 3.981 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.140 0.860 30 H 0.143 0.857 31 H 0.129 0.871 32 H 0.131 0.869 33 H 0.105 0.895 34 H 0.151 0.849 35 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -14.132 -0.050 0.891 14.160 hybrid contribution 0.275 0.970 0.465 1.110 sum -13.858 0.920 1.357 13.954 Atomic orbital electron populations 1.20554 0.91702 1.01934 1.01441 1.18647 0.94977 0.90011 1.12274 1.20607 0.93820 0.96074 0.97051 1.20857 0.93378 0.97246 1.09175 1.18191 0.90966 0.90575 0.90578 1.18734 0.90746 0.89000 1.16595 1.21302 0.94920 0.97103 0.98079 1.21026 0.93259 0.97415 1.09365 1.18707 0.94521 0.92465 0.90140 1.19628 0.90131 1.05425 1.28232 0.88341 1.26350 0.94986 0.96498 0.96480 1.69651 1.10869 1.25842 1.33613 0.86297 0.79994 0.80352 0.79770 1.18478 1.21005 1.16600 1.22488 0.88992 0.97151 1.10494 1.66896 1.09735 1.29517 1.07675 1.18765 0.91300 0.94291 1.13383 1.24314 0.98605 0.90306 0.95472 1.76758 0.91653 1.19482 1.21968 1.45979 1.07582 1.01898 1.67877 0.72397 1.18642 0.94006 0.85975 0.99462 0.92089 0.91632 0.92983 0.85975 0.85685 0.87146 0.86942 0.89528 0.84881 0.78103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.01 10.01 36.01 0.36 -0.65 16 2 C -0.15 -2.17 5.90 -104.37 -0.62 -2.79 16 3 C -0.05 -0.75 9.64 -39.63 -0.38 -1.13 16 4 C -0.19 -2.97 9.40 -39.18 -0.37 -3.34 16 5 C 0.10 1.93 5.91 -104.58 -0.62 1.32 16 6 C -0.02 -0.40 6.74 -82.79 -0.56 -0.96 16 7 C -0.09 -1.88 9.38 -39.52 -0.37 -2.25 16 8 C -0.19 -3.99 9.87 -39.02 -0.39 -4.37 16 9 C 0.05 1.11 5.12 -106.63 -0.55 0.56 16 10 C -0.41 -9.92 9.58 -37.89 -0.36 -10.28 16 11 H 0.10 2.48 8.06 -52.49 -0.42 2.05 16 12 C 0.08 1.90 5.41 -17.33 -0.09 1.80 16 13 N -0.78 -18.65 13.93 55.55 0.77 -17.88 16 14 Si 0.91 19.15 24.52 -169.99 -4.17 14.99 16 15 H -0.26 -5.30 6.71 56.52 0.38 -4.92 16 16 H -0.28 -5.71 7.11 56.52 0.40 -5.30 16 17 H -0.24 -5.41 6.86 56.52 0.39 -5.02 16 18 C -0.02 -0.57 8.36 -16.77 -0.14 -0.71 16 19 N -0.43 -9.79 7.74 -9.14 -0.07 -9.86 16 20 C -0.17 -3.23 5.99 -106.69 -0.64 -3.87 16 21 C 0.11 2.06 11.16 -17.09 -0.19 1.87 16 22 N -0.28 -5.07 12.58 30.81 0.39 -4.68 16 23 N -0.52 -7.96 7.45 32.35 0.24 -7.72 16 24 H 0.43 5.05 8.91 -182.65 -1.63 3.42 16 25 C 0.14 2.26 6.98 -84.17 -0.59 1.67 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 28 H 0.05 0.48 8.03 -51.93 -0.42 0.07 16 29 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 30 H 0.13 1.77 6.13 -52.48 -0.32 1.45 16 31 H 0.11 1.84 6.15 -52.48 -0.32 1.51 16 32 H 0.11 2.19 8.06 -52.49 -0.42 1.76 16 33 H 0.29 6.31 8.30 -40.82 -0.34 5.97 16 34 H 0.13 3.03 4.72 -52.49 -0.25 2.79 16 35 H 0.20 3.87 6.65 -52.48 -0.35 3.52 16 LS Contribution 295.61 15.07 4.45 4.45 Total: -1.00 -26.95 295.61 -8.45 -35.40 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -4.57 Total: 8.44 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: -5.50 Total: -23.14 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: 1.33 Total: -40.14 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -4.17 Total: 14.99 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -26.95 -8.45 -35.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236476962.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.569 kcal (2) G-P(sol) polarization free energy of solvation -26.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds