Wall clock time and date at job start Wed Apr 15 2020 11:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37894 * 119.90000 * 2 1 4 4 C 1.38457 * 120.78577 * 180.02562 * 3 2 1 5 5 C 1.39106 * 120.35895 * 359.77424 * 4 3 2 6 6 C 1.47582 * 120.28859 * 180.02562 * 5 4 3 7 7 C 1.40073 * 119.46743 * 0.17196 * 6 5 4 8 8 C 1.36506 * 119.46005 * 179.72275 * 7 6 5 9 9 C 1.41362 * 118.42646 * 0.53639 * 8 7 6 10 10 C 1.40951 * 120.54222 * 179.74320 * 9 8 7 11 11 H 1.08000 * 120.00052 * 330.30335 * 10 9 8 12 12 C 1.40003 * 119.99688 * 150.29912 * 10 9 8 13 13 N 1.30801 * 120.00197 * 161.80534 * 12 10 9 14 14 Si 1.86802 * 120.00460 * 341.80664 * 12 10 9 15 15 H 1.48497 * 109.47207 * 95.40814 * 14 12 10 16 16 H 1.48495 * 109.47474 * 215.41258 * 14 12 10 17 17 H 1.48508 * 109.46727 * 335.40753 * 14 12 10 18 18 C 1.41009 * 118.91508 * 359.72885 * 9 8 7 19 19 N 1.31203 * 120.41537 * 359.97438 * 18 9 8 20 20 C 1.41346 * 119.41251 * 0.44411 * 5 4 3 21 21 C 1.41160 * 133.54480 * 179.87386 * 20 5 4 22 22 N 1.30296 * 108.70090 * 179.71222 * 21 20 5 23 23 N 1.40030 * 109.68758 * 0.02562 * 22 21 20 24 24 H 0.97003 * 125.98501 * 179.97438 * 23 22 21 25 25 C 1.37201 * 108.03903 * 359.97438 * 23 22 21 26 26 H 1.08998 * 109.47205 * 269.97449 * 1 2 3 27 27 H 1.08997 * 109.46900 * 29.97989 * 1 2 3 28 28 H 1.08999 * 109.47080 * 149.97813 * 1 2 3 29 29 H 1.07998 * 119.60894 * 0.04502 * 3 2 1 30 30 H 1.08006 * 119.81895 * 180.02562 * 4 3 2 31 31 H 1.08004 * 120.27070 * 359.97438 * 7 6 5 32 32 H 1.07999 * 120.78653 * 180.24493 * 8 7 6 33 33 H 0.97000 * 120.00559 * 180.02562 * 13 12 10 34 34 H 1.08001 * 119.79579 * 179.97438 * 18 9 8 35 35 H 1.08003 * 125.65577 * 359.69398 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.1954 0.0000 4 6 3.5788 1.2168 -0.0005 5 6 4.3004 0.0275 0.0037 6 6 5.7760 0.0521 0.0036 7 6 6.4446 1.2830 0.0031 8 6 7.8094 1.3056 0.0088 9 6 8.5029 0.0738 0.0036 10 6 9.9121 0.0451 0.0037 11 1 10.4686 0.8484 -0.4560 12 6 10.5904 -1.0247 0.5999 13 7 11.8451 -1.2489 0.3061 14 14 9.7036 -2.1321 1.8152 15 1 9.1848 -3.3295 1.1065 16 1 10.6489 -2.5572 2.8786 17 1 8.5720 -1.3898 2.4267 18 6 7.7618 -1.1258 -0.0015 19 7 6.4501 -1.0962 -0.0009 20 6 3.6077 -1.2046 -0.0011 21 6 4.0231 -2.5537 -0.0011 22 7 2.9665 -3.3162 -0.0006 23 7 1.8125 -2.5231 -0.0008 24 1 0.8982 -2.8471 -0.0009 25 6 2.2012 -1.2073 -0.0009 26 1 -0.3633 -0.0005 1.0276 27 1 -0.3633 0.8901 -0.5135 28 1 -0.3633 -0.8898 -0.5142 29 1 1.6464 2.1260 0.0007 30 1 4.1013 2.1621 -0.0001 31 1 5.8848 2.2067 0.0022 32 1 8.3468 2.2424 0.0124 33 1 12.3149 -1.9904 0.7188 34 1 8.2770 -2.0750 -0.0060 35 1 5.0471 -2.8972 -0.0018 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236476962.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:05 Heat of formation + Delta-G solvation = 87.496761 kcal Electronic energy + Delta-G solvation = -20331.754436 eV Core-core repulsion = 17294.387337 eV Total energy + Delta-G solvation = -3037.367100 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.35392 -40.44508 -38.10829 -36.06896 -34.64467 -33.21194 -32.31144 -31.21453 -30.59711 -28.56992 -26.13042 -24.50486 -23.76330 -22.84824 -22.55238 -21.69247 -19.66221 -18.73384 -17.70565 -17.38295 -16.62972 -16.30249 -15.92237 -15.78480 -15.44271 -15.22180 -14.90002 -14.60144 -14.39116 -14.04339 -14.02135 -13.47182 -13.21915 -13.10773 -12.85168 -12.59982 -12.36071 -12.17876 -12.08738 -11.88111 -11.80534 -11.32415 -11.07691 -10.44976 -10.02052 -9.84960 -9.44136 -9.07349 -8.53031 -6.56813 -0.35649 0.48651 0.78689 0.91068 1.25705 1.37761 1.42953 1.63649 1.87908 2.02781 2.47583 2.96027 3.55092 3.57877 3.80744 3.84697 4.04995 4.17420 4.24073 4.37251 4.44837 4.56791 4.67380 4.74657 4.83619 4.87901 4.91321 5.05869 5.09869 5.20516 5.30211 5.47009 5.51350 5.56007 5.68222 5.81559 5.97376 6.03443 6.12220 6.46640 6.47285 6.59175 6.68469 7.50930 7.98077 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.027599 B = 0.004911 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.299868 B = 5699.879245 C = 6512.402090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.132 4.132 3 C -0.057 4.057 4 C -0.165 4.165 5 C 0.050 3.950 6 C -0.004 4.004 7 C -0.097 4.097 8 C -0.187 4.187 9 C 0.033 3.967 10 C -0.448 4.448 11 H 0.076 0.924 12 C 0.058 3.942 13 N -0.818 5.818 14 Si 0.956 3.044 15 H -0.256 1.256 16 H -0.267 1.267 17 H -0.265 1.265 18 C -0.044 4.044 19 N -0.448 5.448 20 C -0.190 4.190 21 C 0.083 3.917 22 N -0.289 5.289 23 N -0.503 5.503 24 H 0.449 0.551 25 C 0.122 3.878 26 H 0.077 0.923 27 H 0.090 0.910 28 H 0.061 0.939 29 H 0.168 0.832 30 H 0.147 0.853 31 H 0.153 0.847 32 H 0.130 0.870 33 H 0.302 0.698 34 H 0.129 0.871 35 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.284 3.750 1.225 18.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.136 4.136 3 C -0.077 4.077 4 C -0.186 4.186 5 C 0.046 3.954 6 C -0.139 4.139 7 C -0.116 4.116 8 C -0.212 4.212 9 C 0.028 3.972 10 C -0.476 4.476 11 H 0.094 0.906 12 C -0.161 4.161 13 N -0.441 5.441 14 Si 0.779 3.221 15 H -0.181 1.181 16 H -0.193 1.193 17 H -0.189 1.189 18 C -0.208 4.208 19 N -0.156 5.156 20 C -0.198 4.198 21 C -0.111 4.111 22 N -0.105 5.105 23 N -0.220 5.220 24 H 0.296 0.704 25 C 0.005 3.995 26 H 0.095 0.905 27 H 0.109 0.891 28 H 0.080 0.920 29 H 0.186 0.814 30 H 0.165 0.835 31 H 0.170 0.830 32 H 0.148 0.852 33 H 0.113 0.887 34 H 0.146 0.854 35 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -18.878 1.604 1.217 18.986 hybrid contribution 1.130 0.574 0.312 1.305 sum -17.748 2.178 1.529 17.947 Atomic orbital electron populations 1.20694 0.88368 1.03751 1.02991 1.19274 0.97362 0.88923 1.08065 1.21124 0.93007 0.97802 0.95775 1.21249 0.94632 0.96756 1.05913 1.18302 0.89768 0.92109 0.95177 1.19454 0.92440 0.89058 1.12927 1.21684 0.94461 0.98369 0.97115 1.21361 0.94236 0.97400 1.08180 1.18845 0.94344 0.93489 0.90560 1.19507 0.90645 1.06065 1.31406 0.90630 1.26737 0.95309 0.97031 0.97033 1.69655 1.11737 1.27316 1.35416 0.85634 0.78644 0.79092 0.78701 1.18138 1.19287 1.18904 1.22481 0.89485 0.97127 1.11679 1.66977 1.09336 1.30650 1.08615 1.19010 0.92904 0.94145 1.13779 1.24190 0.98502 0.91116 0.97313 1.76663 0.92249 1.20072 1.21493 1.45934 1.07769 1.01500 1.66806 0.70353 1.18937 0.93244 0.87076 1.00291 0.90483 0.89140 0.92040 0.81435 0.83529 0.82969 0.85239 0.88716 0.85408 0.79493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.42 10.01 71.24 0.71 -0.71 16 2 C -0.13 -3.01 5.90 -19.70 -0.12 -3.12 16 3 C -0.06 -1.22 9.64 22.24 0.21 -1.00 16 4 C -0.16 -4.52 9.40 22.53 0.21 -4.31 16 5 C 0.05 1.82 5.91 -19.84 -0.12 1.70 16 6 C 0.00 -0.16 6.74 41.85 0.28 0.12 16 7 C -0.10 -3.70 9.38 22.31 0.21 -3.49 16 8 C -0.19 -7.99 9.87 22.63 0.22 -7.76 16 9 C 0.03 1.59 5.12 -21.17 -0.11 1.48 16 10 C -0.45 -23.27 9.58 23.36 0.22 -23.04 16 11 H 0.08 4.11 8.06 -2.91 -0.02 4.09 16 12 C 0.06 2.91 5.41 85.27 0.46 3.38 16 13 N -0.82 -41.36 13.93 21.84 0.30 -41.06 16 14 Si 0.96 41.37 24.52 68.60 1.68 43.05 16 15 H -0.26 -10.75 6.71 99.48 0.67 -10.08 16 16 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 17 H -0.26 -12.24 6.86 99.48 0.68 -11.55 16 18 C -0.04 -2.16 8.36 85.47 0.71 -1.45 16 19 N -0.45 -20.83 7.74 -182.82 -1.42 -22.25 16 20 C -0.19 -7.01 5.99 -21.21 -0.13 -7.13 16 21 C 0.08 3.20 11.16 85.64 0.96 4.15 16 22 N -0.29 -10.10 12.58 -56.44 -0.71 -10.81 16 23 N -0.50 -14.14 7.45 -51.56 -0.38 -14.52 16 24 H 0.45 9.01 8.91 -213.36 -1.90 7.11 16 25 C 0.12 3.65 6.98 39.14 0.27 3.92 16 26 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.09 0.91 8.08 -2.39 -0.02 0.89 16 28 H 0.06 0.79 8.03 -2.39 -0.02 0.77 16 29 H 0.17 2.16 8.06 -2.91 -0.02 2.14 16 30 H 0.15 3.31 6.13 -2.91 -0.02 3.29 16 31 H 0.15 4.43 6.15 -2.91 -0.02 4.42 16 32 H 0.13 4.99 8.06 -2.91 -0.02 4.96 16 33 H 0.30 13.62 8.30 -92.71 -0.77 12.85 16 34 H 0.13 6.19 4.72 -2.91 -0.01 6.17 16 35 H 0.19 7.57 6.65 -2.91 -0.02 7.55 16 Total: -1.00 -61.97 295.61 2.68 -59.29 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: -0.81 Total: 23.57 kcal Atomic # 6 Polarization: -41.28 SS G_CDS: 4.01 Total: -37.27 kcal Atomic # 7 Polarization: -86.44 SS G_CDS: -2.21 Total: -88.64 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 1.68 Total: 43.05 kcal Total: -61.97 2.68 -59.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236476962.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.782 kcal (2) G-P(sol) polarization free energy of solvation -61.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds