Wall clock time and date at job start Wed Apr 15 2020 11:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40883 * 120.32108 * 2 1 4 4 C 1.38391 * 134.67855 * 0.31294 * 3 2 1 5 5 N 1.33961 * 107.86642 * 180.02562 * 4 3 2 6 6 H 0.97001 * 125.01417 * 179.90506 * 5 4 3 7 7 N 1.39938 * 109.97642 * 359.62838 * 5 4 3 8 8 C 1.32030 * 109.01577 * 0.23319 * 7 5 4 9 9 C 1.41284 * 134.42727 * 180.02562 * 8 7 5 10 10 C 1.35323 * 119.90546 * 179.97438 * 9 8 7 11 11 C 1.37797 * 120.32522 * 179.97438 * 2 1 3 12 12 C 1.48283 * 119.35006 * 0.02562 * 11 2 1 13 13 C 1.40084 * 120.82990 * 310.01619 * 12 11 2 14 14 C 1.38450 * 119.42523 * 180.02562 * 13 12 11 15 15 N 1.31506 * 121.15695 * 0.02562 * 14 13 12 16 16 C 1.33662 * 121.80100 * 359.97438 * 15 14 13 17 17 C 1.41425 * 119.77821 * 180.02562 * 16 15 14 18 18 H 1.08002 * 120.00642 * 179.97438 * 17 16 15 19 19 C 1.40029 * 120.00134 * 359.97438 * 17 16 15 20 20 N 1.30744 * 119.99909 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00354 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47396 * 59.99960 * 21 19 17 23 23 H 1.48502 * 109.46967 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.46875 * 299.99848 * 21 19 17 25 25 C 1.39391 * 120.82664 * 129.74772 * 12 11 2 26 26 H 1.08998 * 109.46940 * 269.99900 * 1 2 3 27 27 H 1.09002 * 109.46861 * 30.00123 * 1 2 3 28 28 H 1.08997 * 109.47320 * 149.99739 * 1 2 3 29 29 H 1.08003 * 126.06824 * 359.87144 * 4 3 2 30 30 H 1.08000 * 120.04383 * 0.02562 * 9 8 7 31 31 H 1.07997 * 119.15476 * 180.02562 * 10 9 8 32 32 H 1.08004 * 120.28664 * 0.03135 * 13 12 11 33 33 H 1.08001 * 119.42224 * 180.02562 * 14 13 12 34 34 H 0.97000 * 120.00246 * 180.02562 * 20 19 17 35 35 H 1.08009 * 120.58291 * 359.97438 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2182 1.2161 0.0000 4 6 1.8600 2.5529 0.0054 5 7 2.9852 3.2799 0.0015 6 1 3.0216 4.2492 0.0026 7 7 4.1005 2.4346 0.0021 8 6 3.6894 1.1800 0.0012 9 6 4.3403 -0.0740 0.0016 10 6 3.6100 -1.2133 0.0009 11 6 2.2027 -1.1894 0.0005 12 6 1.4540 -2.4694 0.0005 13 6 0.4236 -2.6983 0.9214 14 6 -0.2560 -3.9043 0.8958 15 7 0.0491 -4.8388 0.0224 16 6 1.0233 -4.6710 -0.8773 17 6 1.3153 -5.7046 -1.7974 18 1 2.1014 -5.5728 -2.5262 19 6 0.5852 -6.8990 -1.7636 20 7 -0.3667 -7.0586 -0.8817 21 14 0.9714 -8.2645 -2.9783 22 1 2.3801 -8.7001 -2.8022 23 1 0.0633 -9.4142 -2.7358 24 1 0.7772 -7.7646 -4.3631 25 6 1.7544 -3.4726 -0.9195 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3634 -0.8899 -0.5138 29 1 0.8522 2.9411 0.0092 30 1 5.4192 -0.1232 0.0034 31 1 4.1201 -2.1652 0.0017 32 1 0.1615 -1.9406 1.6451 33 1 -1.0508 -4.0806 1.6055 34 1 -0.8722 -7.8861 -0.8579 35 1 2.5388 -3.3326 -1.6486 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241476374.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:36 Heat of formation + Delta-G solvation = 119.426592 kcal Electronic energy + Delta-G solvation = -20154.540296 eV Core-core repulsion = 17118.557778 eV Total energy + Delta-G solvation = -3035.982518 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.14249 -38.53048 -36.85317 -33.71580 -33.06568 -31.52193 -30.33140 -29.91152 -28.35281 -26.62071 -25.52292 -23.51594 -22.48621 -21.17945 -20.37549 -19.51467 -18.09241 -17.46607 -16.23710 -15.65028 -15.06835 -14.85232 -14.56322 -14.26611 -13.90447 -13.63636 -13.10793 -12.97331 -12.85635 -12.44161 -12.22545 -11.89179 -11.52842 -11.38286 -11.13314 -11.11035 -10.97494 -10.70760 -10.43590 -10.15118 -10.03366 -9.72091 -9.32683 -8.65454 -8.11079 -7.61019 -7.53054 -7.06950 -6.37185 -4.49762 0.74418 1.94247 2.51378 2.72038 2.79615 3.04834 3.09980 3.12361 3.22694 3.96653 4.11666 4.41681 4.67766 4.78181 5.16498 5.31153 5.37936 5.49781 5.68949 5.85601 5.95716 5.98217 6.01772 6.11624 6.22860 6.53293 6.54739 6.61840 6.70217 6.78990 6.87720 7.03798 7.08908 7.11889 7.18881 7.38378 7.56734 7.68637 7.76464 8.04530 8.25062 8.68447 8.94673 10.14766 10.34682 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.032658 B = 0.003993 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.153468 B = 7011.243028 C = 7508.847064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.011 4.011 3 C -0.192 4.192 4 C 0.073 3.927 5 N -0.433 5.433 6 H 0.440 0.560 7 N -0.318 5.318 8 C 0.109 3.891 9 C -0.127 4.127 10 C -0.044 4.044 11 C -0.061 4.061 12 C 0.008 3.992 13 C -0.300 4.300 14 C 0.122 3.878 15 N -0.485 5.485 16 C 0.256 3.744 17 C -0.434 4.434 18 H 0.082 0.918 19 C 0.070 3.930 20 N -0.717 5.717 21 Si 0.906 3.094 22 H -0.265 1.265 23 H -0.278 1.278 24 H -0.265 1.265 25 C -0.256 4.256 26 H 0.071 0.929 27 H 0.053 0.947 28 H 0.082 0.918 29 H 0.184 0.816 30 H 0.125 0.875 31 H 0.130 0.870 32 H 0.096 0.904 33 H 0.117 0.883 34 H 0.272 0.728 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.794 14.068 1.396 14.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.014 4.014 3 C -0.201 4.201 4 C -0.083 4.083 5 N -0.134 5.134 6 H 0.283 0.717 7 N -0.147 5.147 8 C -0.045 4.045 9 C -0.148 4.148 10 C -0.066 4.066 11 C -0.062 4.062 12 C 0.002 3.998 13 C -0.323 4.323 14 C -0.044 4.044 15 N -0.197 5.197 16 C 0.132 3.868 17 C -0.465 4.465 18 H 0.100 0.900 19 C -0.155 4.155 20 N -0.339 5.339 21 Si 0.730 3.270 22 H -0.189 1.189 23 H -0.203 1.203 24 H -0.190 1.190 25 C -0.279 4.279 26 H 0.089 0.911 27 H 0.072 0.928 28 H 0.101 0.899 29 H 0.201 0.799 30 H 0.143 0.857 31 H 0.148 0.852 32 H 0.114 0.886 33 H 0.135 0.865 34 H 0.084 0.916 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.240 13.885 1.439 14.138 hybrid contribution -0.064 0.307 -0.467 0.563 sum 2.176 14.193 0.971 14.391 Atomic orbital electron populations 1.20871 0.90961 1.02754 1.02223 1.19257 0.95214 0.89591 0.97312 1.19434 0.93469 0.92508 1.14715 1.22611 0.92546 0.91423 1.01739 1.46192 1.03998 1.09726 1.53451 0.71693 1.77581 1.05523 1.00136 1.31411 1.20969 0.92662 0.92386 0.98451 1.19696 0.99226 0.88126 1.07749 1.20838 0.93173 0.97939 0.94684 1.18552 0.92398 0.92374 1.02880 1.18496 0.94605 0.91126 0.95552 1.21341 1.04519 1.00676 1.05807 1.22434 0.96480 0.89617 0.95819 1.68727 1.16908 1.29091 1.05011 1.18519 0.87595 0.90328 0.90405 1.19581 1.15684 0.97670 1.13610 0.89952 1.26047 0.94196 0.99512 0.95745 1.70127 1.12947 1.23946 1.26833 0.86421 0.79405 0.79943 0.81233 1.18941 1.20263 1.18969 1.21832 1.06242 0.96186 1.03622 0.91083 0.92808 0.89900 0.79885 0.85685 0.85241 0.88633 0.86515 0.91632 0.88216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.62 8.38 36.00 0.30 -1.32 16 2 C -0.01 -0.19 5.92 -103.78 -0.61 -0.80 16 3 C -0.19 -2.89 6.12 -105.22 -0.64 -3.54 16 4 C 0.07 0.79 11.80 -16.57 -0.20 0.60 16 5 N -0.43 -4.58 7.18 30.86 0.22 -4.36 16 6 H 0.44 2.72 8.96 -182.72 -1.64 1.08 16 7 N -0.32 -4.74 12.70 33.28 0.42 -4.32 16 8 C 0.11 1.76 7.49 -83.00 -0.62 1.14 16 9 C -0.13 -2.01 10.06 -39.46 -0.40 -2.41 16 10 C -0.04 -0.75 9.36 -39.67 -0.37 -1.12 16 11 C -0.06 -1.13 5.51 -104.98 -0.58 -1.71 16 12 C 0.01 0.18 4.67 -104.64 -0.49 -0.31 16 13 C -0.30 -6.44 7.95 -38.81 -0.31 -6.75 16 14 C 0.12 2.87 11.16 -17.61 -0.20 2.67 16 15 N -0.48 -13.17 7.85 -11.22 -0.09 -13.26 16 16 C 0.26 6.91 6.55 -85.02 -0.56 6.35 16 17 C -0.43 -11.54 9.14 -37.70 -0.34 -11.89 16 18 H 0.08 2.05 7.85 -52.49 -0.41 1.63 16 19 C 0.07 1.78 5.50 -17.34 -0.10 1.68 16 20 N -0.72 -19.03 11.46 55.55 0.64 -18.40 16 21 Si 0.91 18.54 29.56 -169.99 -5.02 13.51 16 22 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 23 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 24 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 25 C -0.26 -6.16 9.32 -38.32 -0.36 -6.51 16 26 H 0.07 0.96 7.46 -51.93 -0.39 0.57 16 27 H 0.05 0.63 7.93 -51.93 -0.41 0.22 16 28 H 0.08 1.42 6.39 -51.93 -0.33 1.08 16 29 H 0.18 1.19 8.06 -52.48 -0.42 0.77 16 30 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 31 H 0.13 2.11 8.02 -52.49 -0.42 1.69 16 32 H 0.10 1.83 6.84 -52.48 -0.36 1.47 16 33 H 0.12 2.46 8.06 -52.49 -0.42 2.03 16 34 H 0.27 6.57 8.29 -40.82 -0.34 6.23 16 35 H 0.10 2.27 8.06 -52.48 -0.42 1.84 16 LS Contribution 302.96 15.07 4.57 4.57 Total: -1.00 -31.78 302.96 -9.52 -41.30 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -4.79 Total: 4.87 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: -5.47 Total: -23.91 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: 1.19 Total: -40.34 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.02 Total: 13.51 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.78 -9.52 -41.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241476374.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.725 kcal (2) G-P(sol) polarization free energy of solvation -31.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds