Wall clock time and date at job start Wed Apr 15 2020 11:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40883 * 120.32108 * 2 1 4 4 C 1.38391 * 134.67855 * 0.31294 * 3 2 1 5 5 N 1.33961 * 107.86642 * 180.02562 * 4 3 2 6 6 H 0.97001 * 125.01417 * 179.90506 * 5 4 3 7 7 N 1.39938 * 109.97642 * 359.62838 * 5 4 3 8 8 C 1.32030 * 109.01577 * 0.23319 * 7 5 4 9 9 C 1.41284 * 134.42727 * 180.02562 * 8 7 5 10 10 C 1.35323 * 119.90546 * 179.97438 * 9 8 7 11 11 C 1.37797 * 120.32522 * 179.97438 * 2 1 3 12 12 C 1.48283 * 119.35006 * 0.02562 * 11 2 1 13 13 C 1.40084 * 120.82990 * 310.01619 * 12 11 2 14 14 C 1.38450 * 119.42523 * 180.02562 * 13 12 11 15 15 N 1.31506 * 121.15695 * 0.02562 * 14 13 12 16 16 C 1.33662 * 121.80100 * 359.97438 * 15 14 13 17 17 C 1.41425 * 119.77821 * 180.02562 * 16 15 14 18 18 H 1.08002 * 120.00642 * 179.97438 * 17 16 15 19 19 C 1.40029 * 120.00134 * 359.97438 * 17 16 15 20 20 N 1.30744 * 119.99909 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00354 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47396 * 59.99960 * 21 19 17 23 23 H 1.48502 * 109.46967 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.46875 * 299.99848 * 21 19 17 25 25 C 1.39391 * 120.82664 * 129.74772 * 12 11 2 26 26 H 1.08998 * 109.46940 * 269.99900 * 1 2 3 27 27 H 1.09002 * 109.46861 * 30.00123 * 1 2 3 28 28 H 1.08997 * 109.47320 * 149.99739 * 1 2 3 29 29 H 1.08003 * 126.06824 * 359.87144 * 4 3 2 30 30 H 1.08000 * 120.04383 * 0.02562 * 9 8 7 31 31 H 1.07997 * 119.15476 * 180.02562 * 10 9 8 32 32 H 1.08004 * 120.28664 * 0.03135 * 13 12 11 33 33 H 1.08001 * 119.42224 * 180.02562 * 14 13 12 34 34 H 0.97000 * 120.00246 * 180.02562 * 20 19 17 35 35 H 1.08009 * 120.58291 * 359.97438 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2182 1.2161 0.0000 4 6 1.8600 2.5529 0.0054 5 7 2.9852 3.2799 0.0015 6 1 3.0216 4.2492 0.0026 7 7 4.1005 2.4346 0.0021 8 6 3.6894 1.1800 0.0012 9 6 4.3403 -0.0740 0.0016 10 6 3.6100 -1.2133 0.0009 11 6 2.2027 -1.1894 0.0005 12 6 1.4540 -2.4694 0.0005 13 6 0.4236 -2.6983 0.9214 14 6 -0.2560 -3.9043 0.8958 15 7 0.0491 -4.8388 0.0224 16 6 1.0233 -4.6710 -0.8773 17 6 1.3153 -5.7046 -1.7974 18 1 2.1014 -5.5728 -2.5262 19 6 0.5852 -6.8990 -1.7636 20 7 -0.3667 -7.0586 -0.8817 21 14 0.9714 -8.2645 -2.9783 22 1 2.3801 -8.7001 -2.8022 23 1 0.0633 -9.4142 -2.7358 24 1 0.7772 -7.7646 -4.3631 25 6 1.7544 -3.4726 -0.9195 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3634 -0.8899 -0.5138 29 1 0.8522 2.9411 0.0092 30 1 5.4192 -0.1232 0.0034 31 1 4.1201 -2.1652 0.0017 32 1 0.1615 -1.9406 1.6451 33 1 -1.0508 -4.0806 1.6055 34 1 -0.8722 -7.8861 -0.8579 35 1 2.5388 -3.3326 -1.6486 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241476374.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:36 Heat of formation + Delta-G solvation = 100.206328 kcal Electronic energy + Delta-G solvation = -20155.373749 eV Core-core repulsion = 17118.557778 eV Total energy + Delta-G solvation = -3036.815971 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.21593 -40.20312 -38.25485 -35.47214 -34.38575 -32.97382 -31.83675 -31.49957 -29.58745 -28.01399 -27.30206 -24.67229 -23.97379 -22.96468 -21.87593 -20.61867 -19.25765 -19.02388 -17.63468 -17.20747 -16.57608 -16.18037 -15.94434 -15.87744 -15.43232 -15.15287 -14.38667 -14.30714 -14.04420 -13.94993 -13.85662 -13.35993 -13.01040 -12.80637 -12.74836 -12.58864 -12.47312 -12.20374 -12.07011 -11.67458 -11.32092 -11.14812 -10.98329 -10.06216 -9.58630 -9.48565 -9.42551 -8.33144 -8.23634 -6.46754 -0.34888 0.59849 0.97152 1.29420 1.41953 1.51109 1.54086 1.59457 1.88684 2.25697 2.81579 2.93887 3.32050 3.73262 3.95009 4.01569 4.13201 4.27945 4.29611 4.40822 4.56802 4.62709 4.72967 4.85189 4.91510 4.95183 5.04549 5.08639 5.24871 5.35247 5.43250 5.47085 5.61096 5.66850 5.75923 5.93876 6.03638 6.22278 6.31471 6.34514 6.61197 6.78535 7.02093 8.26094 8.50245 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.032658 B = 0.003993 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.153468 B = 7011.243028 C = 7508.847064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.012 3.988 3 C -0.231 4.231 4 C 0.122 3.878 5 N -0.411 5.411 6 H 0.461 0.539 7 N -0.347 5.347 8 C 0.090 3.910 9 C -0.131 4.131 10 C -0.055 4.055 11 C -0.110 4.110 12 C 0.024 3.976 13 C -0.285 4.285 14 C 0.103 3.897 15 N -0.523 5.523 16 C 0.228 3.772 17 C -0.476 4.476 18 H 0.084 0.916 19 C 0.026 3.974 20 N -0.758 5.758 21 Si 0.984 3.016 22 H -0.260 1.260 23 H -0.267 1.267 24 H -0.260 1.260 25 C -0.279 4.279 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.051 0.949 29 H 0.240 0.760 30 H 0.138 0.862 31 H 0.122 0.878 32 H 0.125 0.875 33 H 0.138 0.862 34 H 0.278 0.722 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.119 17.256 1.487 17.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.010 3.990 3 C -0.241 4.241 4 C -0.037 4.037 5 N -0.113 5.113 6 H 0.310 0.690 7 N -0.177 5.177 8 C -0.062 4.062 9 C -0.152 4.152 10 C -0.078 4.078 11 C -0.111 4.111 12 C 0.018 3.982 13 C -0.308 4.308 14 C -0.061 4.061 15 N -0.236 5.236 16 C 0.103 3.897 17 C -0.507 4.507 18 H 0.102 0.898 19 C -0.195 4.195 20 N -0.380 5.380 21 Si 0.804 3.196 22 H -0.184 1.184 23 H -0.192 1.192 24 H -0.184 1.184 25 C -0.302 4.302 26 H 0.106 0.894 27 H 0.110 0.890 28 H 0.070 0.930 29 H 0.256 0.744 30 H 0.156 0.844 31 H 0.140 0.860 32 H 0.143 0.857 33 H 0.156 0.844 34 H 0.089 0.911 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.590 17.128 1.546 17.271 hybrid contribution 0.112 -0.259 -0.393 0.483 sum 1.702 16.870 1.154 16.994 Atomic orbital electron populations 1.20926 0.89480 1.03127 1.03310 1.19475 0.96179 0.89426 0.93944 1.19660 0.92956 0.93845 1.17612 1.23408 0.94422 0.89552 0.96325 1.46300 1.03199 1.10810 1.50952 0.69020 1.77551 1.07334 0.99969 1.32805 1.21126 0.93653 0.92736 0.98697 1.19797 0.99866 0.88102 1.07462 1.20738 0.92901 0.98240 0.95904 1.18437 0.92919 0.91766 1.08015 1.18769 0.93894 0.91815 0.93746 1.21618 1.03475 1.00276 1.05455 1.22891 0.97351 0.90082 0.95766 1.68662 1.17875 1.30880 1.06224 1.18902 0.88310 0.91566 0.90941 1.19923 1.17019 0.99108 1.14688 0.89772 1.26937 0.93535 1.01561 0.97462 1.70227 1.14144 1.24957 1.28719 0.85243 0.79341 0.76515 0.78455 1.18413 1.19159 1.18387 1.21908 1.06707 0.96627 1.04923 0.89432 0.89020 0.92976 0.74352 0.84419 0.86043 0.85700 0.84446 0.91147 0.88292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.90 8.38 71.24 0.60 -2.30 16 2 C 0.01 0.38 5.92 -19.32 -0.11 0.27 16 3 C -0.23 -6.19 6.12 -20.25 -0.12 -6.31 16 4 C 0.12 1.93 11.80 84.40 1.00 2.92 16 5 N -0.41 -6.67 7.18 -56.27 -0.40 -7.08 16 6 H 0.46 3.20 8.96 -213.42 -1.91 1.29 16 7 N -0.35 -9.39 12.70 -48.61 -0.62 -10.01 16 8 C 0.09 2.77 7.49 42.21 0.32 3.08 16 9 C -0.13 -4.16 10.06 22.35 0.22 -3.94 16 10 C -0.06 -1.96 9.36 22.21 0.21 -1.75 16 11 C -0.11 -4.13 5.51 -20.10 -0.11 -4.24 16 12 C 0.02 1.07 4.67 -19.88 -0.09 0.98 16 13 C -0.29 -12.27 7.95 22.77 0.18 -12.09 16 14 C 0.10 4.96 11.16 84.79 0.95 5.90 16 15 N -0.52 -29.73 7.85 -189.40 -1.49 -31.21 16 16 C 0.23 12.99 6.55 40.19 0.26 13.25 16 17 C -0.48 -26.72 9.14 23.49 0.21 -26.51 16 18 H 0.08 4.45 7.85 -2.91 -0.02 4.43 16 19 C 0.03 1.38 5.50 85.29 0.47 1.85 16 20 N -0.76 -41.90 11.46 21.84 0.25 -41.65 16 21 Si 0.98 39.15 29.56 68.60 2.03 41.18 16 22 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 23 H -0.27 -10.04 7.11 99.48 0.71 -9.34 16 24 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 25 C -0.28 -14.20 9.32 23.09 0.22 -13.98 16 26 H 0.09 2.00 7.46 -2.39 -0.02 1.98 16 27 H 0.09 1.66 7.93 -2.39 -0.02 1.64 16 28 H 0.05 1.70 6.39 -2.39 -0.02 1.68 16 29 H 0.24 1.06 8.06 -2.91 -0.02 1.04 16 30 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 31 H 0.12 4.27 8.02 -2.91 -0.02 4.25 16 32 H 0.13 4.55 6.84 -2.91 -0.02 4.53 16 33 H 0.14 5.83 8.06 -2.91 -0.02 5.81 16 34 H 0.28 13.88 8.29 -92.71 -0.77 13.12 16 35 H 0.10 4.85 8.06 -2.91 -0.02 4.83 16 Total: -1.00 -74.36 302.96 3.19 -71.17 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: -0.77 Total: 20.45 kcal Atomic # 6 Polarization: -47.04 SS G_CDS: 4.19 Total: -42.85 kcal Atomic # 7 Polarization: -87.69 SS G_CDS: -2.26 Total: -89.95 kcal Atomic # 14 Polarization: 39.15 SS G_CDS: 2.03 Total: 41.18 kcal Total: -74.36 3.19 -71.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241476374.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.377 kcal (2) G-P(sol) polarization free energy of solvation -74.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds