Wall clock time and date at job start Wed Apr 15 2020 11:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.40619 * 120.33937 * 2 1 4 4 C 1.38615 * 134.65745 * 0.04236 * 3 2 1 5 5 N 1.33983 * 107.80160 * 179.97438 * 4 3 2 6 6 H 0.96995 * 125.00454 * 179.97438 * 5 4 3 7 7 N 1.39923 * 109.98982 * 359.97438 * 5 4 3 8 8 C 1.31932 * 109.08880 * 0.02562 * 7 5 4 9 9 C 1.41419 * 134.35000 * 180.02562 * 8 7 5 10 10 C 1.35209 * 119.97052 * 179.97438 * 9 8 7 11 11 C 1.38523 * 120.34346 * 180.02562 * 2 1 3 12 12 C 1.47565 * 119.40987 * 359.97438 * 11 2 1 13 13 C 1.39500 * 120.80129 * 245.01929 * 12 11 2 14 14 N 1.31586 * 120.63858 * 179.97438 * 13 12 11 15 15 C 1.32304 * 122.52626 * 0.02562 * 14 13 12 16 16 C 1.36361 * 121.54971 * 359.97438 * 15 14 13 17 17 C 1.41180 * 119.12364 * 359.74753 * 16 15 14 18 18 C 1.40782 * 121.11716 * 180.25523 * 17 16 15 19 19 H 1.08002 * 120.00255 * 203.86059 * 18 17 16 20 20 C 1.40061 * 119.99766 * 23.85630 * 18 17 16 21 21 N 1.30755 * 120.00261 * 16.92120 * 20 18 17 22 22 Si 1.86801 * 119.99879 * 196.91621 * 20 18 17 23 23 H 1.48498 * 109.47282 * 60.00069 * 22 20 18 24 24 H 1.48498 * 109.47266 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46846 * 300.00308 * 22 20 18 26 26 H 1.09000 * 109.47869 * 269.95864 * 1 2 3 27 27 H 1.08998 * 109.47185 * 29.96205 * 1 2 3 28 28 H 1.09003 * 109.47294 * 149.95845 * 1 2 3 29 29 H 1.08003 * 126.09857 * 359.97438 * 4 3 2 30 30 H 1.08001 * 120.01423 * 359.95327 * 9 8 7 31 31 H 1.08007 * 119.17252 * 180.02562 * 10 9 8 32 32 H 1.08005 * 119.68294 * 359.95343 * 13 12 11 33 33 H 1.07997 * 119.22866 * 179.97438 * 15 14 13 34 34 H 1.08005 * 120.43583 * 179.97438 * 16 15 14 35 35 H 0.96997 * 120.00206 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2173 1.2136 0.0000 4 6 1.8584 2.5525 0.0007 5 7 2.9846 3.2784 0.0009 6 1 3.0218 4.2476 0.0010 7 7 4.0990 2.4323 0.0008 8 6 3.6888 1.1784 0.0001 9 6 4.3425 -0.0756 0.0001 10 6 3.6161 -1.2160 -0.0002 11 6 2.2067 -1.1955 -0.0005 12 6 1.4634 -2.4702 -0.0005 13 6 1.5412 -3.3425 1.0854 14 7 0.8766 -4.4781 1.0822 15 6 0.1117 -4.8520 0.0695 16 6 -0.0335 -4.0732 -1.0404 17 6 0.6451 -2.8369 -1.1059 18 6 0.5209 -1.9974 -2.2292 19 1 1.2956 -1.2797 -2.4553 20 6 -0.6073 -2.0931 -3.0537 21 7 -1.6817 -2.7016 -2.6235 22 14 -0.5771 -1.3513 -4.7678 23 1 0.5036 -1.9872 -5.5634 24 1 -1.8845 -1.5857 -5.4317 25 1 -0.3264 0.1092 -4.6707 26 1 -0.3635 -0.0007 1.0276 27 1 -0.3633 0.8903 -0.5132 28 1 -0.3634 -0.8896 -0.5145 29 1 0.8508 2.9412 0.0011 30 1 5.4215 -0.1224 0.0002 31 1 4.1287 -2.1667 0.0002 32 1 2.1530 -3.0833 1.9368 33 1 -0.4099 -5.7961 0.1230 34 1 -0.6622 -4.3962 -1.8570 35 1 -2.4631 -2.7676 -3.1943 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241476667.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:38 Heat of formation + Delta-G solvation = 110.852919 kcal Electronic energy + Delta-G solvation = -20978.910546 eV Core-core repulsion = 17942.556245 eV Total energy + Delta-G solvation = -3036.354301 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.83485 -38.61003 -36.55811 -34.29237 -32.79631 -31.20873 -30.43103 -29.69114 -28.00031 -26.63434 -25.39550 -23.21961 -22.22845 -21.41059 -20.06095 -19.16145 -17.81754 -17.59961 -16.14976 -15.62741 -15.19107 -14.63918 -14.49075 -14.41266 -13.98109 -13.15328 -12.78013 -12.64736 -12.54813 -12.46124 -12.19474 -11.81752 -11.53011 -11.41816 -11.24931 -11.07905 -10.88725 -10.64965 -10.37288 -10.02209 -9.72489 -9.53024 -9.30386 -8.32306 -7.99017 -7.94442 -7.61696 -7.00436 -6.67223 -4.62739 1.05550 2.26866 2.69149 2.79586 2.94343 2.96990 2.97638 3.00737 3.23034 3.79363 4.39633 4.58448 4.71969 4.95720 5.47872 5.57309 5.65635 5.75230 5.86893 5.90355 6.08210 6.24028 6.37418 6.41736 6.47704 6.65114 6.83658 6.87910 6.94033 7.04322 7.10908 7.21034 7.36041 7.37407 7.42388 7.53461 7.59308 7.85867 7.98105 8.07379 8.42390 8.66493 8.71388 9.64277 9.94986 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.014716 B = 0.007632 C = 0.005706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.293747 B = 3667.666034 C = 4905.933657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.001 3.999 3 C -0.187 4.187 4 C 0.067 3.933 5 N -0.436 5.436 6 H 0.437 0.563 7 N -0.325 5.325 8 C 0.107 3.893 9 C -0.137 4.137 10 C -0.045 4.045 11 C -0.031 4.031 12 C -0.222 4.222 13 C 0.124 3.876 14 N -0.579 5.579 15 C 0.079 3.921 16 C -0.211 4.211 17 C 0.143 3.857 18 C -0.435 4.435 19 H 0.085 0.915 20 C 0.079 3.921 21 N -0.779 5.779 22 Si 0.905 3.095 23 H -0.261 1.261 24 H -0.277 1.277 25 H -0.263 1.263 26 H 0.054 0.946 27 H 0.047 0.953 28 H 0.113 0.887 29 H 0.182 0.818 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.120 0.880 33 H 0.116 0.884 34 H 0.125 0.875 35 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.266 8.312 0.880 8.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.001 4.001 3 C -0.196 4.196 4 C -0.089 4.089 5 N -0.136 5.136 6 H 0.280 0.720 7 N -0.154 5.154 8 C -0.046 4.046 9 C -0.159 4.159 10 C -0.068 4.068 11 C -0.033 4.033 12 C -0.227 4.227 13 C -0.034 4.034 14 N -0.293 5.293 15 C -0.069 4.069 16 C -0.233 4.233 17 C 0.135 3.865 18 C -0.465 4.465 19 H 0.103 0.897 20 C -0.141 4.141 21 N -0.403 5.403 22 Si 0.729 3.271 23 H -0.186 1.186 24 H -0.202 1.202 25 H -0.188 1.188 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.131 0.869 29 H 0.199 0.801 30 H 0.137 0.863 31 H 0.140 0.860 32 H 0.137 0.863 33 H 0.133 0.867 34 H 0.143 0.857 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.099 8.428 1.532 9.110 hybrid contribution -0.918 1.033 -1.630 2.137 sum 2.181 9.461 -0.097 9.710 Atomic orbital electron populations 1.21037 0.91025 1.04829 1.01102 1.19439 0.95314 0.89318 0.96067 1.19534 0.93381 0.92623 1.14085 1.22665 0.92348 0.91644 1.02256 1.46143 1.04055 1.09518 1.53934 0.72001 1.77471 1.05618 1.00249 1.32080 1.20947 0.92768 0.92268 0.98610 1.19595 0.98776 0.88300 1.09194 1.20888 0.93658 0.97296 0.94914 1.18123 0.91291 0.92064 1.01798 1.19421 1.09731 0.96181 0.97381 1.22093 0.95964 0.89771 0.95533 1.67302 1.13427 1.18628 1.29980 1.21671 0.96116 0.98309 0.90770 1.21895 1.05862 0.95592 0.99939 1.17701 0.87768 0.90704 0.90280 1.19448 1.03876 1.16901 1.06257 0.89735 1.25977 0.94577 0.93778 0.99812 1.69766 1.02108 1.31775 1.36673 0.86386 0.78554 0.80548 0.81588 1.18586 1.20180 1.18754 0.92700 0.93433 0.86856 0.80142 0.86286 0.86015 0.86278 0.86688 0.85707 0.90374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.38 9.20 36.00 0.33 -2.04 16 2 C 0.00 0.02 5.39 -103.62 -0.56 -0.54 16 3 C -0.19 -3.33 6.12 -105.22 -0.64 -3.98 16 4 C 0.07 0.92 11.80 -16.47 -0.19 0.73 16 5 N -0.44 -5.63 7.18 30.91 0.22 -5.41 16 6 H 0.44 3.66 8.96 -182.74 -1.64 2.02 16 7 N -0.32 -5.51 12.69 33.30 0.42 -5.09 16 8 C 0.11 1.96 7.49 -82.98 -0.62 1.34 16 9 C -0.14 -2.41 10.05 -39.45 -0.40 -2.80 16 10 C -0.05 -0.83 9.56 -39.63 -0.38 -1.21 16 11 C -0.03 -0.63 4.50 -104.96 -0.47 -1.10 16 12 C -0.22 -5.02 4.61 -104.05 -0.48 -5.50 16 13 C 0.12 2.79 10.92 -17.19 -0.19 2.60 16 14 N -0.58 -13.70 10.32 -13.34 -0.14 -13.84 16 15 C 0.08 1.85 11.08 -18.02 -0.20 1.65 16 16 C -0.21 -5.13 8.73 -39.14 -0.34 -5.47 16 17 C 0.14 3.49 4.52 -106.24 -0.48 3.01 16 18 C -0.43 -10.37 6.27 -37.94 -0.24 -10.61 16 19 H 0.08 2.05 7.14 -52.49 -0.37 1.68 16 20 C 0.08 1.80 5.20 -17.33 -0.09 1.71 16 21 N -0.78 -18.09 10.92 55.55 0.61 -17.48 16 22 Si 0.91 17.49 29.59 -169.99 -5.03 12.46 16 23 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 24 H -0.28 -5.20 7.11 56.52 0.40 -4.80 16 25 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 26 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.05 0.80 7.93 -51.93 -0.41 0.39 16 28 H 0.11 2.56 4.24 -51.93 -0.22 2.34 16 29 H 0.18 1.77 8.06 -52.48 -0.42 1.35 16 30 H 0.12 1.81 8.06 -52.49 -0.42 1.38 16 31 H 0.12 2.06 8.06 -52.48 -0.42 1.64 16 32 H 0.12 2.41 8.06 -52.48 -0.42 1.98 16 33 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 34 H 0.13 3.09 6.20 -52.48 -0.33 2.76 16 35 H 0.29 6.07 8.29 -40.82 -0.34 5.73 16 LS Contribution 298.65 15.07 4.50 4.50 Total: -1.00 -28.46 298.65 -9.01 -37.47 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -4.64 Total: 9.60 kcal Atomic # 6 Polarization: -17.27 SS G_CDS: -4.95 Total: -22.22 kcal Atomic # 7 Polarization: -42.93 SS G_CDS: 1.11 Total: -41.81 kcal Atomic # 14 Polarization: 17.49 SS G_CDS: -5.03 Total: 12.46 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.46 -9.01 -37.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241476667.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.323 kcal (2) G-P(sol) polarization free energy of solvation -28.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds