Wall clock time and date at job start Wed Apr 15 2020 11:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.40619 * 120.33937 * 2 1 4 4 C 1.38615 * 134.65745 * 0.04236 * 3 2 1 5 5 N 1.33983 * 107.80160 * 179.97438 * 4 3 2 6 6 H 0.96995 * 125.00454 * 179.97438 * 5 4 3 7 7 N 1.39923 * 109.98982 * 359.97438 * 5 4 3 8 8 C 1.31932 * 109.08880 * 0.02562 * 7 5 4 9 9 C 1.41419 * 134.35000 * 180.02562 * 8 7 5 10 10 C 1.35209 * 119.97052 * 179.97438 * 9 8 7 11 11 C 1.38523 * 120.34346 * 180.02562 * 2 1 3 12 12 C 1.47565 * 119.40987 * 359.97438 * 11 2 1 13 13 C 1.39500 * 120.80129 * 245.01929 * 12 11 2 14 14 N 1.31586 * 120.63858 * 179.97438 * 13 12 11 15 15 C 1.32304 * 122.52626 * 0.02562 * 14 13 12 16 16 C 1.36361 * 121.54971 * 359.97438 * 15 14 13 17 17 C 1.41180 * 119.12364 * 359.74753 * 16 15 14 18 18 C 1.40782 * 121.11716 * 180.25523 * 17 16 15 19 19 H 1.08002 * 120.00255 * 203.86059 * 18 17 16 20 20 C 1.40061 * 119.99766 * 23.85630 * 18 17 16 21 21 N 1.30755 * 120.00261 * 16.92120 * 20 18 17 22 22 Si 1.86801 * 119.99879 * 196.91621 * 20 18 17 23 23 H 1.48498 * 109.47282 * 60.00069 * 22 20 18 24 24 H 1.48498 * 109.47266 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46846 * 300.00308 * 22 20 18 26 26 H 1.09000 * 109.47869 * 269.95864 * 1 2 3 27 27 H 1.08998 * 109.47185 * 29.96205 * 1 2 3 28 28 H 1.09003 * 109.47294 * 149.95845 * 1 2 3 29 29 H 1.08003 * 126.09857 * 359.97438 * 4 3 2 30 30 H 1.08001 * 120.01423 * 359.95327 * 9 8 7 31 31 H 1.08007 * 119.17252 * 180.02562 * 10 9 8 32 32 H 1.08005 * 119.68294 * 359.95343 * 13 12 11 33 33 H 1.07997 * 119.22866 * 179.97438 * 15 14 13 34 34 H 1.08005 * 120.43583 * 179.97438 * 16 15 14 35 35 H 0.96997 * 120.00206 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2173 1.2136 0.0000 4 6 1.8584 2.5525 0.0007 5 7 2.9846 3.2784 0.0009 6 1 3.0218 4.2476 0.0010 7 7 4.0990 2.4323 0.0008 8 6 3.6888 1.1784 0.0001 9 6 4.3425 -0.0756 0.0001 10 6 3.6161 -1.2160 -0.0002 11 6 2.2067 -1.1955 -0.0005 12 6 1.4634 -2.4702 -0.0005 13 6 1.5412 -3.3425 1.0854 14 7 0.8766 -4.4781 1.0822 15 6 0.1117 -4.8520 0.0695 16 6 -0.0335 -4.0732 -1.0404 17 6 0.6451 -2.8369 -1.1059 18 6 0.5209 -1.9974 -2.2292 19 1 1.2956 -1.2797 -2.4553 20 6 -0.6073 -2.0931 -3.0537 21 7 -1.6817 -2.7016 -2.6235 22 14 -0.5771 -1.3513 -4.7678 23 1 0.5036 -1.9872 -5.5634 24 1 -1.8845 -1.5857 -5.4317 25 1 -0.3264 0.1092 -4.6707 26 1 -0.3635 -0.0007 1.0276 27 1 -0.3633 0.8903 -0.5132 28 1 -0.3634 -0.8896 -0.5145 29 1 0.8508 2.9412 0.0011 30 1 5.4215 -0.1224 0.0002 31 1 4.1287 -2.1667 0.0002 32 1 2.1530 -3.0833 1.9368 33 1 -0.4099 -5.7961 0.1230 34 1 -0.6622 -4.3962 -1.8570 35 1 -2.4631 -2.7676 -3.1943 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241476667.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:38 Heat of formation + Delta-G solvation = 95.047232 kcal Electronic energy + Delta-G solvation = -20979.595932 eV Core-core repulsion = 17942.556245 eV Total energy + Delta-G solvation = -3037.039687 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.08875 -40.30629 -38.00547 -36.03397 -34.20812 -32.73935 -32.03821 -31.20115 -29.41471 -28.27897 -27.00420 -24.55745 -23.80132 -23.13245 -21.57435 -20.46807 -19.37375 -19.00077 -17.57389 -17.28139 -16.63596 -16.28881 -16.10025 -15.75452 -15.44025 -14.73367 -14.35668 -14.15588 -13.97237 -13.91885 -13.83049 -13.43286 -13.12200 -13.02312 -12.77671 -12.68795 -12.30948 -12.05616 -11.95664 -11.61537 -11.23871 -11.02028 -10.83250 -9.83590 -9.79458 -9.55777 -9.33530 -8.69081 -8.11822 -6.42477 -0.21202 0.74566 1.06153 1.14625 1.40303 1.48916 1.58027 1.60722 1.94838 2.19010 2.82031 2.99114 3.45120 3.80980 3.83519 4.08891 4.26182 4.31677 4.43471 4.54997 4.58641 4.72818 4.88925 4.96377 4.98052 5.07500 5.11798 5.26463 5.35112 5.48465 5.56670 5.65543 5.68420 5.75067 5.95751 6.10055 6.20278 6.28943 6.37706 6.61706 6.71571 6.87699 6.92757 7.83241 8.25684 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.014716 B = 0.007632 C = 0.005706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.293747 B = 3667.666034 C = 4905.933657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.005 3.995 3 C -0.225 4.225 4 C 0.104 3.896 5 N -0.412 5.412 6 H 0.459 0.541 7 N -0.347 5.347 8 C 0.088 3.912 9 C -0.137 4.137 10 C -0.055 4.055 11 C -0.065 4.065 12 C -0.214 4.214 13 C 0.111 3.889 14 N -0.593 5.593 15 C 0.073 3.927 16 C -0.231 4.231 17 C 0.122 3.878 18 C -0.444 4.444 19 H 0.074 0.926 20 C 0.049 3.951 21 N -0.801 5.801 22 Si 0.966 3.034 23 H -0.266 1.266 24 H -0.265 1.265 25 H -0.259 1.259 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.228 0.772 30 H 0.138 0.862 31 H 0.127 0.873 32 H 0.138 0.862 33 H 0.135 0.865 34 H 0.115 0.885 35 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.181 10.968 0.472 11.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.002 3.998 3 C -0.235 4.235 4 C -0.055 4.055 5 N -0.114 5.114 6 H 0.307 0.693 7 N -0.177 5.177 8 C -0.064 4.064 9 C -0.158 4.158 10 C -0.078 4.078 11 C -0.067 4.067 12 C -0.219 4.219 13 C -0.045 4.045 14 N -0.308 5.308 15 C -0.075 4.075 16 C -0.254 4.254 17 C 0.114 3.886 18 C -0.474 4.474 19 H 0.092 0.908 20 C -0.170 4.170 21 N -0.426 5.426 22 Si 0.787 3.213 23 H -0.191 1.191 24 H -0.190 1.190 25 H -0.183 1.183 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.244 0.756 30 H 0.156 0.844 31 H 0.145 0.855 32 H 0.156 0.844 33 H 0.153 0.847 34 H 0.133 0.867 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.041 11.115 1.144 11.581 hybrid contribution -0.908 0.385 -1.450 1.754 sum 2.133 11.501 -0.306 11.701 Atomic orbital electron populations 1.20946 0.91111 1.04237 1.01295 1.19501 0.95325 0.89898 0.95037 1.19737 0.93310 0.93753 1.16682 1.23310 0.94087 0.90091 0.98011 1.46209 1.03121 1.10583 1.51493 0.69291 1.77427 1.07182 1.00019 1.33099 1.21154 0.93314 0.92856 0.99067 1.19789 0.99688 0.88048 1.08251 1.20872 0.92963 0.98066 0.95857 1.18142 0.92167 0.91553 1.04877 1.19632 1.08747 0.96978 0.96527 1.22445 0.96132 0.89668 0.96300 1.67343 1.13952 1.19326 1.30141 1.21954 0.96138 0.98989 0.90469 1.21890 1.06886 0.96332 1.00288 1.18007 0.88476 0.90939 0.91172 1.19418 1.04149 1.16993 1.06881 0.90751 1.26605 0.93834 0.93978 1.02579 1.69799 1.02634 1.32211 1.37919 0.85475 0.78709 0.79760 0.77337 1.19101 1.18953 1.18318 0.92073 0.91068 0.90312 0.75555 0.84437 0.85510 0.84436 0.84727 0.86711 0.89618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.49 9.20 71.23 0.66 -3.83 16 2 C 0.00 0.19 5.39 -19.22 -0.10 0.09 16 3 C -0.23 -7.55 6.12 -20.25 -0.12 -7.67 16 4 C 0.10 2.40 11.80 84.45 1.00 3.39 16 5 N -0.41 -8.95 7.18 -56.11 -0.40 -9.35 16 6 H 0.46 5.55 8.96 -213.44 -1.91 3.64 16 7 N -0.35 -10.88 12.69 -48.55 -0.62 -11.49 16 8 C 0.09 3.09 7.49 42.27 0.32 3.40 16 9 C -0.14 -4.70 10.05 22.35 0.22 -4.48 16 10 C -0.06 -2.06 9.56 22.24 0.21 -1.84 16 11 C -0.07 -2.71 4.50 -20.08 -0.09 -2.80 16 12 C -0.21 -9.92 4.61 -19.49 -0.09 -10.01 16 13 C 0.11 5.08 10.92 85.03 0.93 6.01 16 14 N -0.59 -28.52 10.32 -196.13 -2.02 -30.55 16 15 C 0.07 3.48 11.08 84.18 0.93 4.42 16 16 C -0.23 -11.65 8.73 22.55 0.20 -11.45 16 17 C 0.12 6.11 4.52 -20.91 -0.09 6.01 16 18 C -0.44 -21.62 6.27 23.33 0.15 -21.47 16 19 H 0.07 3.69 7.14 -2.91 -0.02 3.67 16 20 C 0.05 2.23 5.20 85.30 0.44 2.67 16 21 N -0.80 -37.58 10.92 21.85 0.24 -37.34 16 22 Si 0.97 35.38 29.59 68.60 2.03 37.41 16 23 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16 24 H -0.27 -9.14 7.11 99.48 0.71 -8.44 16 25 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 26 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.07 2.24 7.93 -2.39 -0.02 2.22 16 28 H 0.08 3.59 4.24 -2.39 -0.01 3.58 16 29 H 0.23 3.05 8.06 -2.91 -0.02 3.02 16 30 H 0.14 4.05 8.06 -2.91 -0.02 4.02 16 31 H 0.13 4.39 8.06 -2.91 -0.02 4.37 16 32 H 0.14 5.63 8.06 -2.91 -0.02 5.60 16 33 H 0.14 5.67 8.06 -2.91 -0.02 5.65 16 34 H 0.12 5.90 6.20 -2.91 -0.02 5.88 16 35 H 0.29 12.45 8.29 -92.71 -0.77 11.68 16 Total: -1.00 -62.62 298.65 3.01 -59.61 By element: Atomic # 1 Polarization: 30.05 SS G_CDS: -0.77 Total: 29.29 kcal Atomic # 6 Polarization: -42.12 SS G_CDS: 4.55 Total: -37.57 kcal Atomic # 7 Polarization: -85.93 SS G_CDS: -2.80 Total: -88.74 kcal Atomic # 14 Polarization: 35.38 SS G_CDS: 2.03 Total: 37.41 kcal Total: -62.62 3.01 -59.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241476667.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.660 kcal (2) G-P(sol) polarization free energy of solvation -62.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds