Wall clock time and date at job start Wed Apr 15 2020 11:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.40610 * 120.33898 * 2 1 4 4 C 1.38628 * 134.65759 * 0.02562 * 3 2 1 5 5 N 1.33975 * 107.79232 * 180.02562 * 4 3 2 6 6 H 0.97003 * 124.99836 * 180.02562 * 5 4 3 7 7 N 1.39915 * 110.00049 * 359.97438 * 5 4 3 8 8 C 1.31934 * 109.09195 * 0.02562 * 7 5 4 9 9 C 1.41422 * 134.34641 * 180.02562 * 8 7 5 10 10 C 1.35207 * 119.96683 * 179.97438 * 9 8 7 11 11 C 1.38554 * 120.34449 * 180.02562 * 2 1 3 12 12 C 1.47524 * 119.41029 * 359.97438 * 11 2 1 13 13 C 1.39858 * 120.66143 * 245.02364 * 12 11 2 14 14 C 1.38269 * 118.46884 * 180.02562 * 13 12 11 15 15 C 1.39093 * 119.75838 * 0.02562 * 14 13 12 16 16 N 1.31271 * 121.37772 * 0.02562 * 15 14 13 17 17 C 1.33751 * 121.63499 * 359.65870 * 16 15 14 18 18 C 1.40659 * 119.95598 * 180.31472 * 17 16 15 19 19 H 1.08004 * 119.99661 * 180.31168 * 18 17 16 20 20 C 1.40023 * 120.00236 * 0.30800 * 18 17 16 21 21 N 1.30768 * 119.99942 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00221 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46979 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46963 * 120.00209 * 22 20 18 25 25 H 1.48501 * 109.47351 * 240.00432 * 22 20 18 26 26 H 1.09003 * 109.47064 * 269.99904 * 1 2 3 27 27 H 1.09003 * 109.47781 * 30.00028 * 1 2 3 28 28 H 1.08999 * 109.47371 * 150.00424 * 1 2 3 29 29 H 1.07997 * 126.09908 * 0.02562 * 4 3 2 30 30 H 1.07997 * 120.01654 * 359.95973 * 9 8 7 31 31 H 1.07997 * 119.16550 * 180.02562 * 10 9 8 32 32 H 1.07994 * 120.76438 * 359.97438 * 13 12 11 33 33 H 1.07997 * 120.12195 * 179.97438 * 14 13 12 34 34 H 1.07996 * 119.31437 * 179.97438 * 15 14 13 35 35 H 0.97004 * 119.99966 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2171 1.2135 0.0000 4 6 1.8583 2.5526 0.0004 5 7 2.9845 3.2782 -0.0004 6 1 3.0217 4.2475 0.0000 7 7 4.0989 2.4322 -0.0008 8 6 3.6887 1.1783 -0.0008 9 6 4.3427 -0.0757 -0.0007 10 6 3.6164 -1.2161 -0.0002 11 6 2.2069 -1.1957 -0.0005 12 6 1.4638 -2.4701 -0.0005 13 6 1.5438 -3.3424 1.0898 14 6 0.8290 -4.5250 1.0416 15 6 0.0554 -4.8190 -0.0763 16 7 -0.0133 -3.9951 -1.0959 17 6 0.6501 -2.8338 -1.1053 18 6 0.5460 -1.9743 -2.2139 19 1 1.0854 -1.0387 -2.2244 20 6 -0.2570 -2.3318 -3.3039 21 7 -0.9105 -3.4644 -3.2911 22 14 -0.3959 -1.1900 -4.7759 23 1 0.4348 0.0190 -4.5447 24 1 0.0815 -1.8926 -5.9940 25 1 -1.8140 -0.7892 -4.9594 26 1 -0.3633 0.0000 1.0277 27 1 -0.3635 0.8900 -0.5138 28 1 -0.3634 -0.8900 -0.5138 29 1 0.8507 2.9413 0.0013 30 1 5.4216 -0.1223 -0.0012 31 1 4.1291 -2.1666 0.0003 32 1 2.1506 -3.0983 1.9492 33 1 0.8717 -5.2182 1.8686 34 1 -0.4997 -5.7449 -0.1065 35 1 -1.4670 -3.7118 -4.0460 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241477302.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:40 Heat of formation + Delta-G solvation = 122.473626 kcal Electronic energy + Delta-G solvation = -20971.241836 eV Core-core repulsion = 17935.391447 eV Total energy + Delta-G solvation = -3035.850389 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.84260 -38.50827 -36.49918 -33.75162 -32.83800 -31.27472 -30.20674 -30.05900 -28.00880 -26.59450 -25.22659 -23.22605 -22.28135 -21.28356 -20.04623 -19.18438 -17.81921 -17.47562 -16.19520 -15.66177 -15.21605 -14.57101 -14.38011 -14.30630 -13.94757 -13.19431 -12.78128 -12.57132 -12.56544 -12.37359 -12.19388 -11.62162 -11.40920 -11.24819 -11.09347 -10.99551 -10.87469 -10.55352 -10.40350 -9.99429 -9.80502 -9.49257 -9.37923 -8.34018 -8.13742 -7.65762 -7.53424 -6.74993 -6.42514 -4.53065 1.04505 2.28373 2.69685 2.84730 2.97158 3.04104 3.06835 3.12144 3.20321 3.91357 4.38908 4.69358 4.73428 4.94990 5.46837 5.63900 5.70706 5.82414 5.91223 6.07126 6.10834 6.14083 6.33966 6.37241 6.42618 6.55421 6.64072 6.85576 6.92155 6.96664 7.11299 7.13663 7.32038 7.36534 7.44367 7.47817 7.67524 7.77438 7.96726 8.05247 8.25450 8.61434 8.91348 10.07285 10.25076 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.014994 B = 0.007604 C = 0.005691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.977914 B = 3681.505697 C = 4919.078695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.010 4.010 3 C -0.185 4.185 4 C 0.065 3.935 5 N -0.436 5.436 6 H 0.437 0.563 7 N -0.324 5.324 8 C 0.106 3.894 9 C -0.135 4.135 10 C -0.045 4.045 11 C -0.024 4.024 12 C -0.222 4.222 13 C -0.039 4.039 14 C -0.319 4.319 15 C 0.127 3.873 16 N -0.483 5.483 17 C 0.268 3.732 18 C -0.415 4.415 19 H 0.091 0.909 20 C 0.069 3.931 21 N -0.710 5.710 22 Si 0.898 3.102 23 H -0.258 1.258 24 H -0.272 1.272 25 H -0.272 1.272 26 H 0.056 0.944 27 H 0.050 0.950 28 H 0.106 0.894 29 H 0.182 0.818 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.116 0.884 35 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.064 8.572 3.821 9.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.013 4.013 3 C -0.194 4.194 4 C -0.091 4.091 5 N -0.136 5.136 6 H 0.280 0.720 7 N -0.153 5.153 8 C -0.047 4.047 9 C -0.157 4.157 10 C -0.068 4.068 11 C -0.027 4.027 12 C -0.226 4.226 13 C -0.063 4.063 14 C -0.342 4.342 15 C -0.040 4.040 16 N -0.194 5.194 17 C 0.144 3.856 18 C -0.445 4.445 19 H 0.109 0.891 20 C -0.157 4.157 21 N -0.330 5.330 22 Si 0.723 3.277 23 H -0.182 1.182 24 H -0.197 1.197 25 H -0.197 1.197 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.125 0.875 29 H 0.199 0.801 30 H 0.137 0.863 31 H 0.140 0.860 32 H 0.113 0.887 33 H 0.111 0.889 34 H 0.134 0.866 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.458 9.041 2.919 9.814 hybrid contribution -0.227 0.669 0.100 0.714 sum 2.231 9.711 3.020 10.411 Atomic orbital electron populations 1.21044 0.91184 1.04541 1.01212 1.19413 0.95225 0.89408 0.97232 1.19512 0.93376 0.92585 1.13957 1.22651 0.92353 0.91602 1.02486 1.46133 1.04048 1.09516 1.53936 0.71994 1.77468 1.05636 1.00245 1.31993 1.20941 0.92777 0.92259 0.98712 1.19608 0.98793 0.88312 1.08952 1.20886 0.93676 0.97293 0.94915 1.18171 0.91388 0.92102 1.00991 1.19256 1.08701 0.96179 0.98512 1.20874 0.96347 0.93282 0.95797 1.21181 1.10497 1.00660 1.01901 1.22567 0.94280 0.97439 0.89758 1.68788 1.22667 1.03593 1.24399 1.18515 0.87130 0.89341 0.90603 1.19642 1.22208 1.04167 0.98464 0.89118 1.26102 0.94653 0.95252 0.99710 1.70163 1.16630 1.18109 1.28118 0.86389 0.79003 0.81306 0.81051 1.18184 1.19745 1.19719 0.92553 0.93146 0.87523 0.80121 0.86265 0.86041 0.88702 0.88916 0.86607 0.91597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.30 9.06 36.00 0.33 -1.97 16 2 C -0.01 -0.20 4.89 -103.62 -0.51 -0.71 16 3 C -0.18 -3.29 6.12 -105.22 -0.64 -3.94 16 4 C 0.07 0.89 11.80 -16.47 -0.19 0.69 16 5 N -0.44 -5.61 7.18 30.91 0.22 -5.39 16 6 H 0.44 3.64 8.96 -182.73 -1.64 2.00 16 7 N -0.32 -5.51 12.69 33.31 0.42 -5.09 16 8 C 0.11 1.96 7.49 -82.97 -0.62 1.33 16 9 C -0.14 -2.41 10.06 -39.45 -0.40 -2.80 16 10 C -0.05 -0.85 9.56 -39.63 -0.38 -1.23 16 11 C -0.02 -0.51 4.49 -104.96 -0.47 -0.98 16 12 C -0.22 -5.10 4.61 -104.09 -0.48 -5.58 16 13 C -0.04 -0.84 9.87 -38.96 -0.38 -1.23 16 14 C -0.32 -6.91 10.10 -39.25 -0.40 -7.31 16 15 C 0.13 2.98 11.17 -17.47 -0.20 2.78 16 16 N -0.48 -12.74 7.85 -10.90 -0.09 -12.82 16 17 C 0.27 6.86 5.49 -84.70 -0.46 6.39 16 18 C -0.41 -10.44 6.74 -38.00 -0.26 -10.70 16 19 H 0.09 2.25 5.88 -52.48 -0.31 1.94 16 20 C 0.07 1.68 5.50 -17.34 -0.10 1.59 16 21 N -0.71 -18.15 11.46 55.55 0.64 -17.51 16 22 Si 0.90 18.25 29.56 -169.99 -5.02 13.22 16 23 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 24 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 25 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 26 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.05 0.81 7.93 -51.93 -0.41 0.39 16 28 H 0.11 2.35 4.25 -51.93 -0.22 2.12 16 29 H 0.18 1.72 8.06 -52.49 -0.42 1.30 16 30 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 31 H 0.12 2.12 8.06 -52.49 -0.42 1.70 16 32 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 33 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 34 H 0.12 2.42 8.06 -52.49 -0.42 2.00 16 35 H 0.27 6.33 8.29 -40.82 -0.34 5.99 16 LS Contribution 298.79 15.07 4.50 4.50 Total: -1.00 -30.35 298.79 -9.16 -39.51 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -4.67 Total: 7.22 kcal Atomic # 6 Polarization: -18.49 SS G_CDS: -5.16 Total: -23.65 kcal Atomic # 7 Polarization: -42.01 SS G_CDS: 1.20 Total: -40.81 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.02 Total: 13.22 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.35 -9.16 -39.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241477302.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.987 kcal (2) G-P(sol) polarization free energy of solvation -30.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds