Wall clock time and date at job start Wed Apr 15 2020 11:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.40610 * 120.33898 * 2 1 4 4 C 1.38628 * 134.65759 * 0.02562 * 3 2 1 5 5 N 1.33975 * 107.79232 * 180.02562 * 4 3 2 6 6 H 0.97003 * 124.99836 * 180.02562 * 5 4 3 7 7 N 1.39915 * 110.00049 * 359.97438 * 5 4 3 8 8 C 1.31934 * 109.09195 * 0.02562 * 7 5 4 9 9 C 1.41422 * 134.34641 * 180.02562 * 8 7 5 10 10 C 1.35207 * 119.96683 * 179.97438 * 9 8 7 11 11 C 1.38554 * 120.34449 * 180.02562 * 2 1 3 12 12 C 1.47524 * 119.41029 * 359.97438 * 11 2 1 13 13 C 1.39858 * 120.66143 * 245.02364 * 12 11 2 14 14 C 1.38269 * 118.46884 * 180.02562 * 13 12 11 15 15 C 1.39093 * 119.75838 * 0.02562 * 14 13 12 16 16 N 1.31271 * 121.37772 * 0.02562 * 15 14 13 17 17 C 1.33751 * 121.63499 * 359.65870 * 16 15 14 18 18 C 1.40659 * 119.95598 * 180.31472 * 17 16 15 19 19 H 1.08004 * 119.99661 * 180.31168 * 18 17 16 20 20 C 1.40023 * 120.00236 * 0.30800 * 18 17 16 21 21 N 1.30768 * 119.99942 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00221 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46979 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46963 * 120.00209 * 22 20 18 25 25 H 1.48501 * 109.47351 * 240.00432 * 22 20 18 26 26 H 1.09003 * 109.47064 * 269.99904 * 1 2 3 27 27 H 1.09003 * 109.47781 * 30.00028 * 1 2 3 28 28 H 1.08999 * 109.47371 * 150.00424 * 1 2 3 29 29 H 1.07997 * 126.09908 * 0.02562 * 4 3 2 30 30 H 1.07997 * 120.01654 * 359.95973 * 9 8 7 31 31 H 1.07997 * 119.16550 * 180.02562 * 10 9 8 32 32 H 1.07994 * 120.76438 * 359.97438 * 13 12 11 33 33 H 1.07997 * 120.12195 * 179.97438 * 14 13 12 34 34 H 1.07996 * 119.31437 * 179.97438 * 15 14 13 35 35 H 0.97004 * 119.99966 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2171 1.2135 0.0000 4 6 1.8583 2.5526 0.0004 5 7 2.9845 3.2782 -0.0004 6 1 3.0217 4.2475 0.0000 7 7 4.0989 2.4322 -0.0008 8 6 3.6887 1.1783 -0.0008 9 6 4.3427 -0.0757 -0.0007 10 6 3.6164 -1.2161 -0.0002 11 6 2.2069 -1.1957 -0.0005 12 6 1.4638 -2.4701 -0.0005 13 6 1.5438 -3.3424 1.0898 14 6 0.8290 -4.5250 1.0416 15 6 0.0554 -4.8190 -0.0763 16 7 -0.0133 -3.9951 -1.0959 17 6 0.6501 -2.8338 -1.1053 18 6 0.5460 -1.9743 -2.2139 19 1 1.0854 -1.0387 -2.2244 20 6 -0.2570 -2.3318 -3.3039 21 7 -0.9105 -3.4644 -3.2911 22 14 -0.3959 -1.1900 -4.7759 23 1 0.4348 0.0190 -4.5447 24 1 0.0815 -1.8926 -5.9940 25 1 -1.8140 -0.7892 -4.9594 26 1 -0.3633 0.0000 1.0277 27 1 -0.3635 0.8900 -0.5138 28 1 -0.3634 -0.8900 -0.5138 29 1 0.8507 2.9413 0.0013 30 1 5.4216 -0.1223 -0.0012 31 1 4.1291 -2.1666 0.0003 32 1 2.1506 -3.0983 1.9492 33 1 0.8717 -5.2182 1.8686 34 1 -0.4997 -5.7449 -0.1065 35 1 -1.4670 -3.7118 -4.0460 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241477302.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:40 Heat of formation + Delta-G solvation = 104.872544 kcal Electronic energy + Delta-G solvation = -20972.005076 eV Core-core repulsion = 17935.391447 eV Total energy + Delta-G solvation = -3036.613629 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.09476 -40.19567 -37.95994 -35.52530 -34.24667 -32.82497 -31.94722 -31.43225 -29.41838 -28.18822 -26.88258 -24.55959 -23.84230 -23.02812 -21.54740 -20.48285 -19.28921 -18.99499 -17.64704 -17.29167 -16.67478 -16.08706 -15.99500 -15.75420 -15.45315 -14.71894 -14.24974 -14.07718 -13.98532 -13.83888 -13.82596 -13.28558 -12.93871 -12.86263 -12.73914 -12.48744 -12.35477 -12.10109 -11.99600 -11.60731 -11.19447 -11.13404 -10.85176 -9.99066 -9.62698 -9.38944 -9.30054 -8.30117 -8.07788 -6.36951 -0.22031 0.77618 1.05193 1.28741 1.40899 1.54219 1.54742 1.59152 1.95146 2.23926 2.90194 2.98827 3.45132 3.83143 4.02193 4.20271 4.27282 4.41001 4.43594 4.52202 4.55627 4.71561 4.84661 4.91394 4.95673 4.98027 5.10061 5.22581 5.31186 5.45915 5.56377 5.66702 5.74322 5.78351 5.91235 6.14318 6.15236 6.28974 6.37932 6.41652 6.70934 6.81554 7.09581 8.27556 8.49156 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.014994 B = 0.007604 C = 0.005691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.977914 B = 3681.505697 C = 4919.078695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.002 4.002 3 C -0.224 4.224 4 C 0.105 3.895 5 N -0.412 5.412 6 H 0.459 0.541 7 N -0.348 5.348 8 C 0.087 3.913 9 C -0.136 4.136 10 C -0.057 4.057 11 C -0.064 4.064 12 C -0.214 4.214 13 C -0.052 4.052 14 C -0.310 4.310 15 C 0.103 3.897 16 N -0.520 5.520 17 C 0.243 3.757 18 C -0.433 4.433 19 H 0.087 0.913 20 C 0.028 3.972 21 N -0.751 5.751 22 Si 0.967 3.033 23 H -0.258 1.258 24 H -0.271 1.271 25 H -0.261 1.261 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.231 0.769 30 H 0.137 0.863 31 H 0.124 0.876 32 H 0.118 0.882 33 H 0.122 0.878 34 H 0.133 0.867 35 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.130 11.358 4.262 12.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.005 4.005 3 C -0.234 4.234 4 C -0.054 4.054 5 N -0.114 5.114 6 H 0.307 0.693 7 N -0.178 5.178 8 C -0.065 4.065 9 C -0.157 4.157 10 C -0.079 4.079 11 C -0.066 4.066 12 C -0.218 4.218 13 C -0.076 4.076 14 C -0.333 4.333 15 C -0.063 4.063 16 N -0.233 5.233 17 C 0.118 3.882 18 C -0.464 4.464 19 H 0.105 0.895 20 C -0.194 4.194 21 N -0.373 5.373 22 Si 0.789 3.211 23 H -0.181 1.181 24 H -0.196 1.196 25 H -0.186 1.186 26 H 0.085 0.915 27 H 0.096 0.904 28 H 0.089 0.911 29 H 0.247 0.753 30 H 0.155 0.845 31 H 0.142 0.858 32 H 0.136 0.864 33 H 0.140 0.860 34 H 0.150 0.850 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.550 11.840 3.388 12.576 hybrid contribution -0.220 -0.049 0.114 0.253 sum 2.329 11.791 3.502 12.519 Atomic orbital electron populations 1.20979 0.90905 1.04087 1.01692 1.19524 0.95494 0.89854 0.95628 1.19732 0.93230 0.93790 1.16656 1.23338 0.94151 0.89968 0.97934 1.46210 1.03137 1.10599 1.51431 0.69259 1.77426 1.07237 1.00000 1.33114 1.21139 0.93415 0.92814 0.99156 1.19784 0.99656 0.88119 1.08178 1.20857 0.93081 0.97983 0.95999 1.18199 0.92207 0.91735 1.04454 1.19507 1.07413 0.97169 0.97735 1.21224 0.96736 0.93298 0.96367 1.21491 1.08953 1.00958 1.01913 1.22942 0.95275 0.97957 0.90101 1.68712 1.23966 1.04602 1.26018 1.18875 0.87979 0.89525 0.91799 1.19704 1.23193 1.04258 0.99258 0.89509 1.26871 0.93952 0.96509 1.02041 1.70254 1.17914 1.19910 1.29266 0.85365 0.79276 0.79107 0.77391 1.18109 1.19637 1.18598 0.91506 0.90414 0.91082 0.75276 0.84516 0.85787 0.86410 0.86023 0.84986 0.91211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.35 9.06 71.23 0.65 -3.70 16 2 C 0.00 -0.09 4.89 -19.21 -0.09 -0.19 16 3 C -0.22 -7.47 6.12 -20.25 -0.12 -7.60 16 4 C 0.10 2.36 11.80 84.46 1.00 3.36 16 5 N -0.41 -8.84 7.18 -56.11 -0.40 -9.24 16 6 H 0.46 5.41 8.96 -213.44 -1.91 3.50 16 7 N -0.35 -10.91 12.69 -48.54 -0.62 -11.52 16 8 C 0.09 3.05 7.49 42.27 0.32 3.37 16 9 C -0.14 -4.77 10.06 22.36 0.22 -4.55 16 10 C -0.06 -2.16 9.56 22.24 0.21 -1.95 16 11 C -0.06 -2.68 4.49 -20.09 -0.09 -2.77 16 12 C -0.21 -10.03 4.61 -19.52 -0.09 -10.12 16 13 C -0.05 -2.26 9.87 22.67 0.22 -2.04 16 14 C -0.31 -13.35 10.10 22.48 0.23 -13.13 16 15 C 0.10 4.91 11.17 84.98 0.95 5.86 16 16 N -0.52 -28.47 7.85 -188.40 -1.48 -29.95 16 17 C 0.24 12.86 5.49 40.36 0.22 13.08 16 18 C -0.43 -22.49 6.74 23.29 0.16 -22.33 16 19 H 0.09 4.42 5.88 -2.91 -0.02 4.40 16 20 C 0.03 1.41 5.50 85.28 0.47 1.88 16 21 N -0.75 -39.77 11.46 21.84 0.25 -39.52 16 22 Si 0.97 37.86 29.56 68.60 2.03 39.89 16 23 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 24 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 25 H -0.26 -9.66 7.11 99.48 0.71 -8.96 16 26 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.08 2.29 7.93 -2.39 -0.02 2.27 16 28 H 0.07 3.17 4.25 -2.39 -0.01 3.16 16 29 H 0.23 2.84 8.06 -2.91 -0.02 2.82 16 30 H 0.14 4.11 8.06 -2.91 -0.02 4.09 16 31 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 32 H 0.12 4.48 8.06 -2.91 -0.02 4.45 16 33 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 34 H 0.13 5.63 8.06 -2.91 -0.02 5.60 16 35 H 0.28 13.31 8.29 -92.71 -0.77 12.54 16 Total: -1.00 -68.47 298.79 3.26 -65.21 By element: Atomic # 1 Polarization: 26.73 SS G_CDS: -0.77 Total: 25.96 kcal Atomic # 6 Polarization: -45.07 SS G_CDS: 4.25 Total: -40.83 kcal Atomic # 7 Polarization: -87.98 SS G_CDS: -2.25 Total: -90.23 kcal Atomic # 14 Polarization: 37.86 SS G_CDS: 2.03 Total: 39.89 kcal Total: -68.47 3.26 -65.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241477302.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.081 kcal (2) G-P(sol) polarization free energy of solvation -68.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds