Wall clock time and date at job start Wed Apr 15 2020 11:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35306 * 120.04295 * 2 1 4 4 C 1.40786 * 121.68623 * 180.02562 * 3 2 1 5 5 C 1.48159 * 119.36287 * 179.97438 * 4 3 2 6 6 C 1.39988 * 119.61496 * 180.02562 * 5 4 3 7 7 C 1.38660 * 119.46229 * 179.97438 * 6 5 4 8 8 C 1.38318 * 118.69825 * 359.75249 * 7 6 5 9 9 C 1.40697 * 119.20570 * 0.47128 * 8 7 6 10 10 C 1.41342 * 119.76667 * 179.79419 * 9 8 7 11 11 H 1.07997 * 119.99944 * 2.11103 * 10 9 8 12 12 C 1.39983 * 120.00011 * 182.11000 * 10 9 8 13 13 N 1.30762 * 119.99917 * 178.06750 * 12 10 9 14 14 Si 1.86799 * 119.99919 * 357.78851 * 12 10 9 15 15 H 1.48504 * 109.47295 * 180.27633 * 14 12 10 16 16 H 1.48500 * 109.47516 * 300.27850 * 14 12 10 17 17 H 1.48505 * 109.47226 * 60.27675 * 14 12 10 18 18 N 1.32297 * 119.61206 * 359.97438 * 5 4 3 19 19 C 1.37915 * 121.27067 * 0.25202 * 4 3 2 20 20 C 1.40819 * 119.35687 * 359.50175 * 19 4 3 21 21 C 1.38432 * 134.68153 * 180.15726 * 20 19 4 22 22 N 1.33949 * 107.85350 * 180.30275 * 21 20 19 23 23 H 0.97006 * 125.00418 * 179.97438 * 22 21 20 24 24 N 1.39924 * 109.98746 * 359.97438 * 22 21 20 25 25 C 1.32017 * 109.02904 * 0.02562 * 24 22 21 26 26 H 1.09006 * 109.47373 * 90.00376 * 1 2 3 27 27 H 1.09002 * 109.46831 * 209.99673 * 1 2 3 28 28 H 1.08998 * 109.47155 * 329.99979 * 1 2 3 29 29 H 1.07993 * 119.15406 * 0.04086 * 3 2 1 30 30 H 1.08004 * 120.26988 * 0.02568 * 6 5 4 31 31 H 1.07998 * 120.64960 * 180.02562 * 7 6 5 32 32 H 1.07996 * 120.40208 * 180.26436 * 8 7 6 33 33 H 0.96992 * 120.00319 * 353.98265 * 13 12 10 34 34 H 1.08007 * 120.32297 * 179.72685 * 19 4 3 35 35 H 1.07997 * 126.07008 * 0.32405 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1844 1.1713 0.0000 4 6 3.5917 1.2117 -0.0005 5 6 4.2809 2.5232 -0.0011 6 6 5.6800 2.5695 -0.0022 7 6 6.3217 3.7987 -0.0032 8 6 5.5535 4.9489 -0.0084 9 6 4.1510 4.8379 -0.0023 10 6 3.3546 6.0056 -0.0031 11 1 3.8224 6.9782 -0.0428 12 6 1.9596 5.9014 0.0475 13 7 1.2242 6.9820 0.0849 14 14 1.1483 4.2188 0.0537 15 1 -0.3270 4.3807 0.1044 16 1 1.5234 3.4837 -1.1808 17 1 1.6034 3.4541 1.2427 18 7 3.5668 3.6369 -0.0016 19 6 4.3411 0.0539 -0.0063 20 6 3.6859 -1.1926 -0.0010 21 6 4.1043 -2.5122 -0.0014 22 7 3.0130 -3.2890 -0.0012 23 1 3.0205 -4.2590 -0.0018 24 7 1.8608 -2.4951 -0.0001 25 6 2.2145 -1.2231 -0.0001 26 1 -0.3634 -0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.6314 2.0989 0.0007 30 1 6.2550 1.6552 -0.0030 31 1 7.4001 3.8568 -0.0045 32 1 6.0247 5.9207 -0.0137 33 1 1.6447 7.8523 0.1657 34 1 5.4201 0.1027 -0.0110 35 1 5.1286 -2.8545 -0.0016 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241514866.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:48 Heat of formation + Delta-G solvation = 111.992609 kcal Electronic energy + Delta-G solvation = -20581.788325 eV Core-core repulsion = 17545.483445 eV Total energy + Delta-G solvation = -3036.304880 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.14936 -38.89905 -36.99665 -33.98072 -33.09887 -31.54424 -30.87412 -30.49395 -28.61862 -26.67433 -25.15393 -23.94476 -22.73121 -21.26482 -20.43723 -19.48061 -18.42088 -17.80271 -16.84560 -16.22621 -15.15665 -14.88447 -14.58634 -14.30244 -13.94380 -13.52160 -13.26836 -13.21389 -12.89580 -12.65680 -12.55792 -11.88696 -11.86092 -11.51811 -11.28509 -11.25433 -10.68566 -10.55893 -10.27786 -10.06223 -9.78436 -9.53466 -9.36531 -8.75235 -8.54526 -8.00104 -7.70897 -7.25077 -7.01305 -4.80831 0.68825 1.74832 2.44352 2.59320 2.71481 2.85613 3.53202 3.64512 3.97603 4.09642 4.33485 4.41905 4.64102 4.69130 5.06939 5.16406 5.32109 5.53652 5.55172 5.63407 5.81438 5.85217 5.88551 5.95348 6.16888 6.24526 6.38790 6.41374 6.47518 6.62264 6.72631 6.98507 6.99848 7.07724 7.14120 7.28178 7.38216 7.46129 7.64108 7.69231 8.05426 8.27500 8.61122 9.40748 9.99119 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.020777 B = 0.006374 C = 0.004891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.290015 B = 4391.803639 C = 5723.645591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.090 4.090 3 C -0.057 4.057 4 C -0.051 4.051 5 C 0.213 3.787 6 C -0.299 4.299 7 C -0.045 4.045 8 C -0.261 4.261 9 C 0.254 3.746 10 C -0.473 4.473 11 H 0.083 0.917 12 C 0.041 3.959 13 N -0.804 5.804 14 Si 1.147 2.853 15 H -0.330 1.330 16 H -0.281 1.281 17 H -0.280 1.280 18 N -0.567 5.567 19 C -0.043 4.043 20 C -0.198 4.198 21 C 0.075 3.925 22 N -0.432 5.432 23 H 0.440 0.560 24 N -0.311 5.311 25 C 0.117 3.883 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.139 0.861 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.283 0.717 34 H 0.132 0.868 35 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.511 -16.437 -0.006 17.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.093 4.093 3 C -0.079 4.079 4 C -0.053 4.053 5 C 0.073 3.927 6 C -0.322 4.322 7 C -0.069 4.069 8 C -0.283 4.283 9 C 0.131 3.869 10 C -0.504 4.504 11 H 0.101 0.899 12 C -0.180 4.180 13 N -0.426 5.426 14 Si 0.984 3.016 15 H -0.264 1.264 16 H -0.210 1.210 17 H -0.209 1.209 18 N -0.286 5.286 19 C -0.064 4.064 20 C -0.207 4.207 21 C -0.082 4.082 22 N -0.133 5.133 23 H 0.284 0.716 24 N -0.140 5.140 25 C -0.037 4.037 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.156 0.844 30 H 0.126 0.874 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.094 0.906 34 H 0.149 0.851 35 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 1.159 -17.820 -0.041 17.858 hybrid contribution 3.523 1.145 0.013 3.704 sum 4.682 -16.675 -0.028 17.320 Atomic orbital electron populations 1.20695 0.90722 1.02705 1.02331 1.18576 0.95663 0.88717 1.06308 1.21315 0.94036 0.97960 0.94597 1.18397 0.92541 0.91457 1.02907 1.19301 0.90018 0.90225 0.93127 1.21079 0.93698 0.97199 1.20246 1.20895 0.97995 0.92741 0.95240 1.21663 0.94583 0.97367 1.14702 1.18541 0.90437 0.90080 0.87865 1.20769 0.93563 0.93097 1.43018 0.89922 1.27842 0.94906 1.06711 0.88498 1.70652 1.40643 1.00342 1.30916 0.82281 0.69956 0.69830 0.79512 1.26380 1.21045 1.20928 1.66285 1.37811 0.98278 1.26269 1.20523 0.99133 0.88839 0.97919 1.19525 0.93408 0.93024 1.14780 1.22628 0.93313 0.90588 1.01647 1.46229 1.04073 1.09741 1.53238 0.71625 1.77584 1.03759 1.01615 1.31013 1.20804 0.92762 0.91803 0.98339 0.91296 0.91488 0.91334 0.84424 0.87423 0.87736 0.87696 0.90552 0.85083 0.79675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.66 10.01 36.01 0.36 -1.30 16 2 C -0.09 -1.62 5.89 -104.50 -0.62 -2.24 16 3 C -0.06 -1.18 8.82 -39.66 -0.35 -1.53 16 4 C -0.05 -1.03 5.86 -104.98 -0.62 -1.65 16 5 C 0.21 4.86 6.73 -82.94 -0.56 4.30 16 6 C -0.30 -6.08 9.45 -38.77 -0.37 -6.45 16 7 C -0.05 -0.92 10.15 -39.40 -0.40 -1.32 16 8 C -0.26 -6.06 9.83 -38.62 -0.38 -6.44 16 9 C 0.25 6.67 6.43 -85.01 -0.55 6.12 16 10 C -0.47 -12.95 9.57 -37.75 -0.36 -13.32 16 11 H 0.08 2.24 8.06 -52.49 -0.42 1.82 16 12 C 0.04 1.14 5.52 -17.35 -0.10 1.04 16 13 N -0.80 -22.09 13.65 55.55 0.76 -21.33 16 14 Si 1.15 28.74 21.98 -169.99 -3.74 25.01 16 15 H -0.33 -8.08 7.11 56.52 0.40 -7.68 16 16 H -0.28 -6.99 6.52 56.52 0.37 -6.62 16 17 H -0.28 -6.96 6.44 56.52 0.36 -6.59 16 18 N -0.57 -14.59 4.17 -7.69 -0.03 -14.62 16 19 C -0.04 -0.70 9.47 -38.72 -0.37 -1.07 16 20 C -0.20 -2.97 6.32 -105.22 -0.67 -3.64 16 21 C 0.08 0.77 12.09 -16.56 -0.20 0.57 16 22 N -0.43 -4.46 7.18 30.87 0.22 -4.23 16 23 H 0.44 2.58 8.96 -182.73 -1.64 0.94 16 24 N -0.31 -4.67 12.69 33.29 0.42 -4.25 16 25 C 0.12 1.98 7.18 -83.00 -0.60 1.38 16 26 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 28 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 29 H 0.14 3.07 1.79 -52.49 -0.09 2.97 16 30 H 0.11 1.81 6.11 -52.48 -0.32 1.49 16 31 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 32 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 33 H 0.28 7.40 8.73 -40.82 -0.36 7.05 16 34 H 0.13 1.81 6.07 -52.48 -0.32 1.49 16 35 H 0.19 1.01 8.06 -52.49 -0.42 0.58 16 LS Contribution 291.26 15.07 4.39 4.39 Total: -1.00 -31.99 291.26 -8.28 -40.27 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -4.55 Total: 0.29 kcal Atomic # 6 Polarization: -19.76 SS G_CDS: -5.76 Total: -25.52 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: 1.37 Total: -44.43 kcal Atomic # 14 Polarization: 28.74 SS G_CDS: -3.74 Total: 25.01 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -31.99 -8.28 -40.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241514866.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.260 kcal (2) G-P(sol) polarization free energy of solvation -31.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds