Wall clock time and date at job start Wed Apr 15 2020 11:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35306 * 120.04295 * 2 1 4 4 C 1.40786 * 121.68623 * 180.02562 * 3 2 1 5 5 C 1.48159 * 119.36287 * 179.97438 * 4 3 2 6 6 C 1.39988 * 119.61496 * 180.02562 * 5 4 3 7 7 C 1.38660 * 119.46229 * 179.97438 * 6 5 4 8 8 C 1.38318 * 118.69825 * 359.75249 * 7 6 5 9 9 C 1.40697 * 119.20570 * 0.47128 * 8 7 6 10 10 C 1.41342 * 119.76667 * 179.79419 * 9 8 7 11 11 H 1.07997 * 119.99944 * 2.11103 * 10 9 8 12 12 C 1.39983 * 120.00011 * 182.11000 * 10 9 8 13 13 N 1.30762 * 119.99917 * 178.06750 * 12 10 9 14 14 Si 1.86799 * 119.99919 * 357.78851 * 12 10 9 15 15 H 1.48504 * 109.47295 * 180.27633 * 14 12 10 16 16 H 1.48500 * 109.47516 * 300.27850 * 14 12 10 17 17 H 1.48505 * 109.47226 * 60.27675 * 14 12 10 18 18 N 1.32297 * 119.61206 * 359.97438 * 5 4 3 19 19 C 1.37915 * 121.27067 * 0.25202 * 4 3 2 20 20 C 1.40819 * 119.35687 * 359.50175 * 19 4 3 21 21 C 1.38432 * 134.68153 * 180.15726 * 20 19 4 22 22 N 1.33949 * 107.85350 * 180.30275 * 21 20 19 23 23 H 0.97006 * 125.00418 * 179.97438 * 22 21 20 24 24 N 1.39924 * 109.98746 * 359.97438 * 22 21 20 25 25 C 1.32017 * 109.02904 * 0.02562 * 24 22 21 26 26 H 1.09006 * 109.47373 * 90.00376 * 1 2 3 27 27 H 1.09002 * 109.46831 * 209.99673 * 1 2 3 28 28 H 1.08998 * 109.47155 * 329.99979 * 1 2 3 29 29 H 1.07993 * 119.15406 * 0.04086 * 3 2 1 30 30 H 1.08004 * 120.26988 * 0.02568 * 6 5 4 31 31 H 1.07998 * 120.64960 * 180.02562 * 7 6 5 32 32 H 1.07996 * 120.40208 * 180.26436 * 8 7 6 33 33 H 0.96992 * 120.00319 * 353.98265 * 13 12 10 34 34 H 1.08007 * 120.32297 * 179.72685 * 19 4 3 35 35 H 1.07997 * 126.07008 * 0.32405 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1844 1.1713 0.0000 4 6 3.5917 1.2117 -0.0005 5 6 4.2809 2.5232 -0.0011 6 6 5.6800 2.5695 -0.0022 7 6 6.3217 3.7987 -0.0032 8 6 5.5535 4.9489 -0.0084 9 6 4.1510 4.8379 -0.0023 10 6 3.3546 6.0056 -0.0031 11 1 3.8224 6.9782 -0.0428 12 6 1.9596 5.9014 0.0475 13 7 1.2242 6.9820 0.0849 14 14 1.1483 4.2188 0.0537 15 1 -0.3270 4.3807 0.1044 16 1 1.5234 3.4837 -1.1808 17 1 1.6034 3.4541 1.2427 18 7 3.5668 3.6369 -0.0016 19 6 4.3411 0.0539 -0.0063 20 6 3.6859 -1.1926 -0.0010 21 6 4.1043 -2.5122 -0.0014 22 7 3.0130 -3.2890 -0.0012 23 1 3.0205 -4.2590 -0.0018 24 7 1.8608 -2.4951 -0.0001 25 6 2.2145 -1.2231 -0.0001 26 1 -0.3634 -0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.6314 2.0989 0.0007 30 1 6.2550 1.6552 -0.0030 31 1 7.4001 3.8568 -0.0045 32 1 6.0247 5.9207 -0.0137 33 1 1.6447 7.8523 0.1657 34 1 5.4201 0.1027 -0.0110 35 1 5.1286 -2.8545 -0.0016 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241514866.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:48 Heat of formation + Delta-G solvation = 90.596299 kcal Electronic energy + Delta-G solvation = -20582.716138 eV Core-core repulsion = 17545.483445 eV Total energy + Delta-G solvation = -3037.232694 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.23149 -40.59125 -38.32630 -35.83849 -34.50283 -33.16153 -32.39857 -31.72763 -29.98577 -28.12196 -26.82629 -25.21622 -24.18217 -22.95646 -21.77831 -20.77364 -20.27381 -18.92747 -18.10165 -17.77367 -16.87649 -16.20006 -15.95251 -15.85106 -15.40629 -15.01891 -14.86690 -14.56332 -14.40769 -14.20354 -14.00813 -13.65374 -13.27164 -12.85236 -12.82221 -12.69918 -12.42498 -12.15435 -11.75914 -11.55743 -11.35861 -11.18490 -11.16010 -10.44197 -10.06238 -9.63909 -9.49847 -9.22651 -8.30514 -6.81137 -0.43080 0.27082 0.78568 1.19597 1.48523 1.49739 1.67287 1.89005 1.97511 2.38953 2.56899 2.91687 3.21425 3.65715 3.66990 3.68467 4.03175 4.20282 4.34721 4.38399 4.46455 4.50054 4.66235 4.68101 4.73531 4.75334 4.77523 4.96185 5.08424 5.27758 5.38023 5.42167 5.43444 5.55170 5.65546 5.72296 5.84922 5.93441 6.06356 6.33516 6.41509 6.60037 6.66334 7.59689 7.96146 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.020777 B = 0.006374 C = 0.004891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.290015 B = 4391.803639 C = 5723.645591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.102 4.102 3 C -0.087 4.087 4 C -0.111 4.111 5 C 0.193 3.807 6 C -0.277 4.277 7 C -0.034 4.034 8 C -0.283 4.283 9 C 0.237 3.763 10 C -0.515 4.515 11 H 0.068 0.932 12 C 0.015 3.985 13 N -0.836 5.836 14 Si 1.185 2.815 15 H -0.332 1.332 16 H -0.290 1.290 17 H -0.288 1.288 18 N -0.593 5.593 19 C 0.003 3.997 20 C -0.239 4.239 21 C 0.138 3.862 22 N -0.410 5.410 23 H 0.463 0.537 24 N -0.341 5.341 25 C 0.098 3.902 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.061 0.939 29 H 0.109 0.891 30 H 0.158 0.842 31 H 0.154 0.846 32 H 0.111 0.889 33 H 0.281 0.719 34 H 0.167 0.833 35 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.255 -21.902 -0.042 23.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.105 4.105 3 C -0.109 4.109 4 C -0.113 4.113 5 C 0.055 3.945 6 C -0.299 4.299 7 C -0.058 4.058 8 C -0.305 4.305 9 C 0.112 3.888 10 C -0.548 4.548 11 H 0.086 0.914 12 C -0.201 4.201 13 N -0.460 5.460 14 Si 1.023 2.977 15 H -0.267 1.267 16 H -0.220 1.220 17 H -0.218 1.218 18 N -0.313 5.313 19 C -0.018 4.018 20 C -0.249 4.249 21 C -0.022 4.022 22 N -0.111 5.111 23 H 0.312 0.688 24 N -0.170 5.170 25 C -0.055 4.055 26 H 0.094 0.906 27 H 0.097 0.903 28 H 0.080 0.920 29 H 0.127 0.873 30 H 0.175 0.825 31 H 0.172 0.828 32 H 0.130 0.870 33 H 0.092 0.908 34 H 0.184 0.816 35 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 4.892 -23.340 -0.078 23.847 hybrid contribution 2.669 2.266 0.020 3.501 sum 7.560 -21.074 -0.058 22.389 Atomic orbital electron populations 1.20724 0.89962 1.02897 1.02864 1.18705 0.96532 0.89070 1.06219 1.21153 0.94845 0.97643 0.97276 1.18378 0.92594 0.91582 1.08751 1.19999 0.91642 0.90442 0.92412 1.21694 0.92870 0.99182 1.16121 1.21428 1.00285 0.91465 0.92624 1.21849 0.93621 0.99275 1.15749 1.18747 0.91966 0.90052 0.88037 1.20728 0.93925 0.93334 1.46821 0.91411 1.28389 0.95564 1.07834 0.88312 1.70662 1.40620 1.00390 1.34305 0.81724 0.69229 0.67897 0.78896 1.26652 1.21951 1.21775 1.66126 1.39223 0.99006 1.26905 1.20797 1.00328 0.87924 0.92754 1.19863 0.92576 0.94704 1.17749 1.23572 0.95418 0.88241 0.95007 1.46381 1.03255 1.10994 1.50477 0.68834 1.77566 1.05839 1.01161 1.32415 1.20820 0.94081 0.91890 0.98726 0.90587 0.90347 0.91983 0.87342 0.82502 0.82849 0.87047 0.90812 0.81618 0.73214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.42 10.01 71.24 0.71 -2.70 16 2 C -0.10 -3.73 5.89 -19.79 -0.12 -3.84 16 3 C -0.09 -3.69 8.82 22.22 0.20 -3.50 16 4 C -0.11 -4.37 5.86 -20.10 -0.12 -4.49 16 5 C 0.19 8.62 6.73 42.14 0.28 8.90 16 6 C -0.28 -10.11 9.45 22.80 0.22 -9.89 16 7 C -0.03 -1.27 10.15 22.39 0.23 -1.05 16 8 C -0.28 -13.07 9.83 22.89 0.23 -12.85 16 9 C 0.24 12.91 6.43 40.25 0.26 13.17 16 10 C -0.52 -30.26 9.57 23.46 0.22 -30.04 16 11 H 0.07 4.00 8.06 -2.91 -0.02 3.98 16 12 C 0.01 0.88 5.52 85.28 0.47 1.35 16 13 N -0.84 -49.31 13.65 21.83 0.30 -49.02 16 14 Si 1.19 63.42 21.98 68.60 1.51 64.93 16 15 H -0.33 -17.26 7.11 99.48 0.71 -16.55 16 16 H -0.29 -15.51 6.52 99.48 0.65 -14.86 16 17 H -0.29 -15.40 6.44 99.48 0.64 -14.76 16 18 N -0.59 -31.39 4.17 -178.23 -0.74 -32.14 16 19 C 0.00 0.09 9.47 22.82 0.22 0.31 16 20 C -0.24 -5.99 6.32 -20.25 -0.13 -6.12 16 21 C 0.14 1.75 12.09 84.42 1.02 2.77 16 22 N -0.41 -5.91 7.18 -56.25 -0.40 -6.32 16 23 H 0.46 2.35 8.96 -213.43 -1.91 0.44 16 24 N -0.34 -9.06 12.69 -48.60 -0.62 -9.67 16 25 C 0.10 3.08 7.18 42.22 0.30 3.39 16 26 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 27 H 0.08 2.22 8.10 -2.39 -0.02 2.20 16 28 H 0.06 1.98 8.08 -2.39 -0.02 1.96 16 29 H 0.11 5.13 1.79 -2.91 -0.01 5.13 16 30 H 0.16 4.11 6.11 -2.91 -0.02 4.09 16 31 H 0.15 4.21 8.06 -2.91 -0.02 4.19 16 32 H 0.11 4.86 8.06 -2.91 -0.02 4.83 16 33 H 0.28 15.92 8.73 -92.71 -0.81 15.11 16 34 H 0.17 3.33 6.07 -2.91 -0.02 3.31 16 35 H 0.25 -0.05 8.06 -2.91 -0.02 -0.07 16 Total: -1.00 -78.74 291.26 3.11 -75.62 By element: Atomic # 1 Polarization: 2.11 SS G_CDS: -0.92 Total: 1.19 kcal Atomic # 6 Polarization: -48.59 SS G_CDS: 3.99 Total: -44.59 kcal Atomic # 7 Polarization: -95.67 SS G_CDS: -1.47 Total: -97.14 kcal Atomic # 14 Polarization: 63.42 SS G_CDS: 1.51 Total: 64.93 kcal Total: -78.74 3.11 -75.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241514866.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.217 kcal (2) G-P(sol) polarization free energy of solvation -78.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds