Wall clock time and date at job start Wed Apr 15 2020 11:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35346 * 120.04787 * 2 1 4 4 C 1.40723 * 121.70143 * 180.02562 * 3 2 1 5 5 C 1.48350 * 119.35024 * 179.97438 * 4 3 2 6 6 C 1.39755 * 120.41406 * 359.73564 * 5 4 3 7 7 N 1.31908 * 121.14580 * 179.75025 * 6 5 4 8 8 C 1.31529 * 122.11688 * 0.54456 * 7 6 5 9 9 C 1.40780 * 120.67891 * 359.72591 * 8 7 6 10 10 C 1.41439 * 120.60512 * 179.97438 * 9 8 7 11 11 H 1.07996 * 120.00122 * 155.57582 * 10 9 8 12 12 C 1.39934 * 119.99512 * 335.57326 * 10 9 8 13 13 N 1.30828 * 120.00518 * 342.35245 * 12 10 9 14 14 Si 1.86800 * 119.99495 * 162.35170 * 12 10 9 15 15 H 1.48493 * 109.47291 * 94.67371 * 14 12 10 16 16 H 1.48499 * 109.47106 * 214.67563 * 14 12 10 17 17 H 1.48502 * 109.47226 * 334.67014 * 14 12 10 18 18 C 1.39173 * 120.41331 * 180.02562 * 5 4 3 19 19 C 1.37738 * 121.29639 * 359.97024 * 4 3 2 20 20 C 1.40925 * 119.35846 * 0.02562 * 19 4 3 21 21 C 1.38365 * 134.67601 * 179.97438 * 20 19 4 22 22 N 1.33982 * 107.86982 * 180.02562 * 21 20 19 23 23 H 0.97005 * 125.01652 * 179.97438 * 22 21 20 24 24 N 1.39937 * 109.96925 * 0.26894 * 22 21 20 25 25 C 1.32053 * 109.00673 * 359.54171 * 24 22 21 26 26 H 1.09001 * 109.47381 * 90.00755 * 1 2 3 27 27 H 1.09007 * 109.46788 * 210.00046 * 1 2 3 28 28 H 1.08995 * 109.47639 * 329.99966 * 1 2 3 29 29 H 1.07999 * 119.15069 * 0.02562 * 3 2 1 30 30 H 1.08007 * 119.43059 * 0.02562 * 6 5 4 31 31 H 1.07998 * 119.65825 * 179.70276 * 8 7 6 32 32 H 0.96996 * 120.00074 * 180.02562 * 13 12 10 33 33 H 1.07990 * 120.95349 * 359.97438 * 18 5 4 34 34 H 1.08005 * 120.31964 * 179.97438 * 19 4 3 35 35 H 1.08001 * 126.06457 * 0.02780 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1847 1.1716 0.0000 4 6 3.5913 1.2122 -0.0005 5 6 4.2808 2.5257 -0.0011 6 6 3.5426 3.7123 -0.0066 7 7 4.1407 4.8880 -0.0023 8 6 5.4506 5.0061 -0.0032 9 6 6.2748 3.8648 -0.0031 10 6 7.6833 3.9936 -0.0046 11 1 8.2990 3.1951 0.3821 12 6 8.2789 5.1558 -0.5073 13 7 7.5939 5.9615 -1.2774 14 14 10.0523 5.5568 -0.0785 15 1 10.9471 5.0515 -1.1504 16 1 10.2109 7.0281 0.0461 17 1 10.4085 4.9098 1.2098 18 6 5.6710 2.5917 -0.0022 19 6 4.3405 0.0564 -0.0005 20 6 3.6856 -1.1915 -0.0004 21 6 4.1047 -2.5101 -0.0008 22 7 3.0140 -3.2882 -0.0010 23 1 3.0222 -4.2582 -0.0017 24 7 1.8611 -2.4950 -0.0070 25 6 2.2144 -1.2227 -0.0006 26 1 -0.3634 -0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3634 0.8899 0.5138 29 1 1.6317 2.0992 0.0004 30 1 2.4635 3.6660 -0.0101 31 1 5.8986 5.9888 -0.0043 32 1 8.0069 6.7669 -1.6261 33 1 6.2697 1.6929 -0.0022 34 1 5.4194 0.1059 -0.0013 35 1 5.1293 -2.8516 -0.0008 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241515661.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:52 Heat of formation + Delta-G solvation = 88.882651 kcal Electronic energy + Delta-G solvation = -19917.315760 eV Core-core repulsion = 16880.008757 eV Total energy + Delta-G solvation = -3037.307003 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.19872 -40.31004 -38.29122 -35.85061 -34.67220 -32.66380 -32.37436 -31.51251 -29.45151 -27.89966 -27.11435 -25.08462 -23.82454 -23.11089 -21.86028 -20.68142 -19.16511 -18.89333 -17.96087 -17.47170 -16.84497 -16.29307 -16.11159 -15.92064 -15.17592 -14.84064 -14.49401 -14.37330 -14.17895 -14.10563 -13.59513 -13.30131 -13.17934 -12.93911 -12.84909 -12.67301 -12.50753 -12.40369 -12.18792 -11.82121 -11.24044 -11.19337 -11.16809 -10.31587 -9.91174 -9.68674 -9.31068 -8.71856 -8.15224 -6.42427 -0.39924 0.37830 0.94625 1.28982 1.42218 1.51522 1.56860 1.61006 1.88334 2.21226 2.69894 2.98170 3.31034 3.69689 3.79355 3.88719 4.19147 4.24113 4.34472 4.43709 4.50782 4.61250 4.65958 4.76413 4.85803 4.86036 4.92561 5.15515 5.19523 5.26565 5.42443 5.47827 5.54266 5.65341 5.88066 5.91251 5.96025 6.20093 6.31791 6.39809 6.60663 6.80955 6.81335 7.80872 8.28451 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.026415 B = 0.004059 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.731374 B = 6897.239171 C = 7870.699626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.089 4.089 3 C -0.072 4.072 4 C -0.083 4.083 5 C -0.060 4.060 6 C -0.044 4.044 7 N -0.493 5.493 8 C 0.008 3.992 9 C 0.041 3.959 10 C -0.482 4.482 11 H 0.088 0.912 12 C 0.035 3.965 13 N -0.822 5.822 14 Si 0.989 3.011 15 H -0.261 1.261 16 H -0.268 1.268 17 H -0.255 1.255 18 C -0.199 4.199 19 C -0.041 4.041 20 C -0.232 4.232 21 C 0.115 3.885 22 N -0.411 5.411 23 H 0.461 0.539 24 N -0.337 5.337 25 C 0.090 3.910 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.136 0.864 30 H 0.148 0.852 31 H 0.133 0.867 32 H 0.293 0.707 33 H 0.123 0.877 34 H 0.134 0.866 35 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.665 -15.861 1.891 16.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.092 4.092 3 C -0.094 4.094 4 C -0.085 4.085 5 C -0.062 4.062 6 C -0.200 4.200 7 N -0.200 5.200 8 C -0.154 4.154 9 C 0.037 3.963 10 C -0.511 4.511 11 H 0.106 0.894 12 C -0.181 4.181 13 N -0.448 5.448 14 Si 0.808 3.192 15 H -0.185 1.185 16 H -0.192 1.192 17 H -0.179 1.179 18 C -0.224 4.224 19 C -0.061 4.061 20 C -0.242 4.242 21 C -0.043 4.043 22 N -0.114 5.114 23 H 0.310 0.690 24 N -0.167 5.167 25 C -0.063 4.063 26 H 0.092 0.908 27 H 0.084 0.916 28 H 0.098 0.902 29 H 0.153 0.847 30 H 0.165 0.835 31 H 0.150 0.850 32 H 0.103 0.897 33 H 0.141 0.859 34 H 0.151 0.849 35 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -5.248 -15.781 1.742 16.722 hybrid contribution 1.914 -0.008 -0.081 1.916 sum -3.334 -15.790 1.661 16.223 Atomic orbital electron populations 1.20665 0.89035 1.03184 1.02738 1.18798 0.96766 0.88648 1.05024 1.20705 0.92939 0.97891 0.97884 1.18440 0.93252 0.91456 1.05358 1.19554 0.93542 0.93316 0.99745 1.22360 0.99221 0.87191 1.11230 1.67064 1.13118 1.28772 1.11062 1.22839 0.87840 0.98971 1.05763 1.18774 0.95401 0.92253 0.89921 1.19821 0.91466 1.03114 1.36730 0.89404 1.26880 1.05303 0.94390 0.91489 1.69839 1.40884 1.11647 1.22393 0.85093 0.75611 0.78457 0.79989 1.18513 1.19202 1.17857 1.21651 0.93383 0.96957 1.10424 1.20682 0.99573 0.89409 0.96459 1.19833 0.93259 0.94253 1.16854 1.23405 0.95194 0.88946 0.96803 1.46313 1.03176 1.10825 1.51045 0.69040 1.77518 1.05672 1.01347 1.32133 1.21008 0.93533 0.92420 0.99309 0.90773 0.91606 0.90189 0.84677 0.83529 0.85002 0.89652 0.85905 0.84861 0.74584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.36 10.01 71.23 0.71 -1.65 16 2 C -0.09 -2.70 5.89 -19.79 -0.12 -2.82 16 3 C -0.07 -2.40 8.92 22.21 0.20 -2.21 16 4 C -0.08 -3.11 5.86 -20.10 -0.12 -3.23 16 5 C -0.06 -2.69 5.88 -19.99 -0.12 -2.81 16 6 C -0.04 -2.11 10.58 85.05 0.90 -1.21 16 7 N -0.49 -26.37 10.32 -192.72 -1.99 -28.36 16 8 C 0.01 0.45 9.89 85.36 0.84 1.30 16 9 C 0.04 2.21 5.58 -21.22 -0.12 2.09 16 10 C -0.48 -25.04 9.08 23.47 0.21 -24.82 16 11 H 0.09 4.27 7.90 -2.91 -0.02 4.24 16 12 C 0.04 1.72 5.15 85.25 0.44 2.16 16 13 N -0.82 -42.51 10.96 21.82 0.24 -42.27 16 14 Si 0.99 36.48 29.59 68.60 2.03 38.51 16 15 H -0.26 -9.18 7.11 99.48 0.71 -8.47 16 16 H -0.27 -9.52 7.11 99.48 0.71 -8.81 16 17 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 18 C -0.20 -9.60 9.27 23.15 0.21 -9.38 16 19 C -0.04 -1.35 9.49 22.81 0.22 -1.13 16 20 C -0.23 -6.49 6.32 -20.25 -0.13 -6.62 16 21 C 0.12 1.98 12.08 84.40 1.02 3.00 16 22 N -0.41 -6.93 7.18 -56.27 -0.40 -7.33 16 23 H 0.46 3.50 8.96 -213.42 -1.91 1.58 16 24 N -0.34 -8.98 12.70 -48.63 -0.62 -9.60 16 25 C 0.09 2.73 7.18 42.19 0.30 3.04 16 26 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.06 1.52 8.10 -2.38 -0.02 1.50 16 28 H 0.08 1.65 8.08 -2.39 -0.02 1.63 16 29 H 0.14 4.17 6.08 -2.91 -0.02 4.15 16 30 H 0.15 5.98 6.11 -2.91 -0.02 5.96 16 31 H 0.13 7.65 6.15 -2.91 -0.02 7.63 16 32 H 0.29 13.60 8.30 -92.71 -0.77 12.83 16 33 H 0.12 5.29 6.24 -2.92 -0.02 5.27 16 34 H 0.13 4.08 6.16 -2.91 -0.02 4.06 16 35 H 0.24 1.53 8.06 -2.91 -0.02 1.51 16 Total: -1.00 -70.04 301.54 2.97 -67.08 By element: Atomic # 1 Polarization: 27.01 SS G_CDS: -0.76 Total: 26.25 kcal Atomic # 6 Polarization: -48.75 SS G_CDS: 4.46 Total: -44.29 kcal Atomic # 7 Polarization: -84.78 SS G_CDS: -2.77 Total: -87.55 kcal Atomic # 14 Polarization: 36.48 SS G_CDS: 2.03 Total: 38.51 kcal Total: -70.04 2.97 -67.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241515661.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.959 kcal (2) G-P(sol) polarization free energy of solvation -70.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds