Wall clock time and date at job start Wed Apr 15 2020 11:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.35210 * 120.01786 * 2 1 4 4 C 1.40965 * 121.65904 * 179.97438 * 3 2 1 5 5 C 1.47529 * 119.41240 * 180.02562 * 4 3 2 6 6 C 1.39854 * 120.66293 * 309.99916 * 5 4 3 7 7 C 1.38264 * 118.47632 * 179.97438 * 6 5 4 8 8 C 1.39102 * 119.75151 * 0.02562 * 7 6 5 9 9 N 1.31268 * 121.37952 * 0.02670 * 8 7 6 10 10 C 1.33747 * 121.63173 * 359.64764 * 9 8 7 11 11 C 1.40666 * 119.95592 * 180.33490 * 10 9 8 12 12 H 1.07998 * 120.00339 * 180.28956 * 11 10 9 13 13 C 1.40025 * 119.99889 * 0.30065 * 11 10 9 14 14 N 1.30771 * 120.00325 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00090 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47458 * 59.99356 * 15 13 11 17 17 H 1.48500 * 109.47380 * 179.97438 * 15 13 11 18 18 H 1.48510 * 109.46908 * 299.99256 * 15 13 11 19 19 C 1.38545 * 121.17610 * 0.04734 * 4 3 2 20 20 C 1.40599 * 119.32198 * 359.95232 * 19 4 3 21 21 C 1.38624 * 134.66584 * 180.02562 * 20 19 4 22 22 N 1.33982 * 107.79981 * 180.02562 * 21 20 19 23 23 H 0.97001 * 125.00018 * 179.97438 * 22 21 20 24 24 N 1.39910 * 109.99336 * 0.24518 * 22 21 20 25 25 C 1.31937 * 109.09511 * 359.57804 * 24 22 21 26 26 H 1.08996 * 109.47465 * 269.98002 * 1 2 3 27 27 H 1.09005 * 109.46993 * 29.97891 * 1 2 3 28 28 H 1.08998 * 109.47395 * 149.97956 * 1 2 3 29 29 H 1.07994 * 119.16589 * 0.02562 * 3 2 1 30 30 H 1.08011 * 120.76500 * 0.02562 * 6 5 4 31 31 H 1.07997 * 120.12655 * 179.97438 * 7 6 5 32 32 H 1.08007 * 119.31061 * 179.97438 * 8 7 6 33 33 H 0.96999 * 120.00112 * 180.02562 * 14 13 11 34 34 H 1.08001 * 120.33873 * 179.97438 * 19 4 3 35 35 H 1.07999 * 126.09843 * 0.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1833 1.1707 0.0000 4 6 3.5924 1.2111 0.0005 5 6 4.2798 2.5165 0.0011 6 6 3.9283 3.5081 -0.9204 7 6 4.6017 4.7149 -0.8791 8 6 5.6026 4.9149 0.0659 9 7 5.9270 3.9784 0.9266 10 6 5.3075 2.7932 0.9403 11 6 5.6788 1.8173 1.8829 12 1 5.1823 0.8583 1.8915 13 6 6.6921 2.0894 2.8102 14 7 7.2936 3.2506 2.7996 15 14 7.1848 0.7939 4.0624 16 1 7.6623 -0.4216 3.3555 17 1 8.2724 1.3251 4.9226 18 1 6.0114 0.4479 4.9045 19 6 4.3433 0.0468 0.0001 20 6 3.6862 -1.1962 0.0001 21 6 4.1025 -2.5185 0.0002 22 7 3.0086 -3.2922 -0.0003 23 1 3.0132 -4.2622 -0.0008 24 7 1.8588 -2.4951 -0.0065 25 6 2.2144 -1.2246 -0.0006 26 1 -0.3634 -0.0004 1.0276 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3634 -0.8898 -0.5141 29 1 1.6301 2.0982 0.0004 30 1 3.1481 3.3354 -1.6471 31 1 4.3521 5.4991 -1.5785 32 1 6.1243 5.8603 0.0916 33 1 7.9958 3.4389 3.4418 34 1 5.4223 0.0935 0.0001 35 1 5.1259 -2.8634 0.0007 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241516104.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:55 Heat of formation + Delta-G solvation = 118.861143 kcal Electronic energy + Delta-G solvation = -20602.467765 eV Core-core repulsion = 17566.460727 eV Total energy + Delta-G solvation = -3036.007038 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.82608 -38.38943 -36.64363 -33.72083 -33.03402 -31.06989 -30.31668 -30.11509 -28.21843 -26.04169 -25.74369 -23.34327 -22.28766 -21.28010 -20.03196 -19.33805 -17.65665 -17.48450 -16.38783 -15.55678 -15.08061 -14.60269 -14.39349 -14.31266 -13.84051 -13.17805 -13.01359 -12.97649 -12.60388 -12.37939 -12.12945 -11.76801 -11.48492 -11.25538 -11.14889 -11.09576 -10.93755 -10.70187 -10.41860 -10.01740 -9.82341 -9.55600 -9.40571 -8.43946 -8.10427 -7.65526 -7.58763 -6.71303 -6.43885 -4.51968 1.03453 2.21110 2.72681 2.84432 2.97940 3.04691 3.06992 3.10715 3.21550 3.90184 4.41759 4.69030 4.73868 4.92992 5.38595 5.50023 5.69774 5.86596 5.90030 5.95503 5.99982 6.09695 6.12144 6.18197 6.22883 6.44965 6.54683 6.69754 6.87389 6.97256 7.01066 7.11601 7.30216 7.36084 7.37841 7.45831 7.67438 7.78294 7.96467 8.05057 8.23356 8.61342 8.91099 10.07014 10.25143 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.014237 B = 0.007174 C = 0.005221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.227361 B = 3901.878150 C = 5361.316935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.096 4.096 3 C -0.057 4.057 4 C -0.013 4.013 5 C -0.227 4.227 6 C -0.037 4.037 7 C -0.320 4.320 8 C 0.129 3.871 9 N -0.482 5.482 10 C 0.267 3.733 11 C -0.421 4.421 12 H 0.094 0.906 13 C 0.069 3.931 14 N -0.710 5.710 15 Si 0.903 3.097 16 H -0.263 1.263 17 H -0.277 1.277 18 H -0.264 1.264 19 C -0.058 4.058 20 C -0.184 4.184 21 C 0.060 3.940 22 N -0.436 5.436 23 H 0.437 0.563 24 N -0.320 5.320 25 C 0.106 3.894 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.121 0.879 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.117 0.883 33 H 0.274 0.726 34 H 0.130 0.870 35 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.585 -8.471 -3.288 10.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.099 4.099 3 C -0.080 4.080 4 C -0.015 4.015 5 C -0.232 4.232 6 C -0.061 4.061 7 C -0.343 4.343 8 C -0.039 4.039 9 N -0.194 5.194 10 C 0.144 3.856 11 C -0.450 4.450 12 H 0.112 0.888 13 C -0.158 4.158 14 N -0.330 5.330 15 Si 0.727 3.273 16 H -0.188 1.188 17 H -0.202 1.202 18 H -0.188 1.188 19 C -0.078 4.078 20 C -0.193 4.193 21 C -0.096 4.096 22 N -0.136 5.136 23 H 0.280 0.720 24 N -0.149 5.149 25 C -0.048 4.048 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.139 0.861 30 H 0.114 0.886 31 H 0.112 0.888 32 H 0.135 0.865 33 H 0.085 0.915 34 H 0.148 0.852 35 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -4.760 -9.056 -2.531 10.539 hybrid contribution 0.393 -0.579 -0.032 0.700 sum -4.367 -9.635 -2.563 10.884 Atomic orbital electron populations 1.20596 0.91381 1.01997 1.01691 1.18437 0.94961 0.89111 1.07415 1.20772 0.93963 0.96467 0.96768 1.18282 0.91246 0.92597 0.99385 1.19319 1.05538 0.94030 1.04339 1.20894 0.96586 0.92767 0.95862 1.21194 1.06908 0.98982 1.07247 1.22596 0.93037 0.97413 0.90847 1.68786 1.27506 1.00823 1.22262 1.18527 0.86920 0.90196 0.89981 1.19744 1.14297 1.00634 1.10372 0.88763 1.26126 0.95796 0.95834 0.98004 1.70145 1.14867 1.19952 1.28083 0.86451 0.79019 0.81390 0.80476 1.18769 1.20168 1.18824 1.20713 0.99559 0.88618 0.98929 1.19658 0.93192 0.93190 1.13293 1.22681 0.93072 0.90916 1.02895 1.46136 1.04092 1.09463 1.53958 0.71993 1.77431 1.04156 1.01713 1.31604 1.20733 0.92953 0.91693 0.99373 0.91948 0.91939 0.92026 0.86138 0.88574 0.88829 0.86526 0.91469 0.85206 0.79984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.42 10.01 36.00 0.36 -1.06 16 2 C -0.10 -1.70 5.89 -104.49 -0.61 -2.31 16 3 C -0.06 -1.08 8.98 -39.63 -0.36 -1.44 16 4 C -0.01 -0.27 5.04 -104.96 -0.53 -0.80 16 5 C -0.23 -5.36 5.49 -104.09 -0.57 -5.93 16 6 C -0.04 -0.81 9.61 -38.97 -0.37 -1.18 16 7 C -0.32 -7.02 10.10 -39.25 -0.40 -7.41 16 8 C 0.13 3.07 11.17 -17.47 -0.20 2.88 16 9 N -0.48 -12.98 7.85 -10.89 -0.09 -13.07 16 10 C 0.27 7.04 6.55 -84.70 -0.55 6.48 16 11 C -0.42 -10.78 7.92 -38.00 -0.30 -11.09 16 12 H 0.09 2.30 5.25 -52.49 -0.28 2.03 16 13 C 0.07 1.70 5.50 -17.33 -0.10 1.60 16 14 N -0.71 -18.40 11.46 55.55 0.64 -17.76 16 15 Si 0.90 18.23 29.56 -169.99 -5.02 13.21 16 16 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 17 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 18 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 19 C -0.06 -1.16 7.59 -38.58 -0.29 -1.45 16 20 C -0.18 -3.29 6.32 -105.22 -0.66 -3.95 16 21 C 0.06 0.82 12.10 -16.47 -0.20 0.62 16 22 N -0.44 -5.56 7.18 30.91 0.22 -5.34 16 23 H 0.44 3.60 8.96 -182.74 -1.64 1.97 16 24 N -0.32 -5.34 12.69 33.31 0.42 -4.92 16 25 C 0.11 1.93 7.18 -82.97 -0.60 1.34 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.06 0.78 8.08 -51.93 -0.42 0.36 16 28 H 0.06 0.85 8.10 -51.93 -0.42 0.43 16 29 H 0.12 2.10 8.00 -52.49 -0.42 1.68 16 30 H 0.10 1.86 8.06 -52.48 -0.42 1.43 16 31 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 32 H 0.12 2.46 8.06 -52.48 -0.42 2.04 16 33 H 0.27 6.46 8.29 -40.82 -0.34 6.12 16 34 H 0.13 2.64 7.21 -52.49 -0.38 2.26 16 35 H 0.18 1.73 8.06 -52.49 -0.42 1.30 16 LS Contribution 303.74 15.07 4.58 4.58 Total: -1.00 -30.92 303.74 -9.43 -40.36 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -4.80 Total: 6.66 kcal Atomic # 6 Polarization: -18.33 SS G_CDS: -5.38 Total: -23.71 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: 1.20 Total: -41.09 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.02 Total: 13.21 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.92 -9.43 -40.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241516104.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.217 kcal (2) G-P(sol) polarization free energy of solvation -30.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds