Wall clock time and date at job start Wed Apr 15 2020 11:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.35210 * 120.01786 * 2 1 4 4 C 1.40965 * 121.65904 * 179.97438 * 3 2 1 5 5 C 1.47529 * 119.41240 * 180.02562 * 4 3 2 6 6 C 1.39854 * 120.66293 * 309.99916 * 5 4 3 7 7 C 1.38264 * 118.47632 * 179.97438 * 6 5 4 8 8 C 1.39102 * 119.75151 * 0.02562 * 7 6 5 9 9 N 1.31268 * 121.37952 * 0.02670 * 8 7 6 10 10 C 1.33747 * 121.63173 * 359.64764 * 9 8 7 11 11 C 1.40666 * 119.95592 * 180.33490 * 10 9 8 12 12 H 1.07998 * 120.00339 * 180.28956 * 11 10 9 13 13 C 1.40025 * 119.99889 * 0.30065 * 11 10 9 14 14 N 1.30771 * 120.00325 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00090 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47458 * 59.99356 * 15 13 11 17 17 H 1.48500 * 109.47380 * 179.97438 * 15 13 11 18 18 H 1.48510 * 109.46908 * 299.99256 * 15 13 11 19 19 C 1.38545 * 121.17610 * 0.04734 * 4 3 2 20 20 C 1.40599 * 119.32198 * 359.95232 * 19 4 3 21 21 C 1.38624 * 134.66584 * 180.02562 * 20 19 4 22 22 N 1.33982 * 107.79981 * 180.02562 * 21 20 19 23 23 H 0.97001 * 125.00018 * 179.97438 * 22 21 20 24 24 N 1.39910 * 109.99336 * 0.24518 * 22 21 20 25 25 C 1.31937 * 109.09511 * 359.57804 * 24 22 21 26 26 H 1.08996 * 109.47465 * 269.98002 * 1 2 3 27 27 H 1.09005 * 109.46993 * 29.97891 * 1 2 3 28 28 H 1.08998 * 109.47395 * 149.97956 * 1 2 3 29 29 H 1.07994 * 119.16589 * 0.02562 * 3 2 1 30 30 H 1.08011 * 120.76500 * 0.02562 * 6 5 4 31 31 H 1.07997 * 120.12655 * 179.97438 * 7 6 5 32 32 H 1.08007 * 119.31061 * 179.97438 * 8 7 6 33 33 H 0.96999 * 120.00112 * 180.02562 * 14 13 11 34 34 H 1.08001 * 120.33873 * 179.97438 * 19 4 3 35 35 H 1.07999 * 126.09843 * 0.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1833 1.1707 0.0000 4 6 3.5924 1.2111 0.0005 5 6 4.2798 2.5165 0.0011 6 6 3.9283 3.5081 -0.9204 7 6 4.6017 4.7149 -0.8791 8 6 5.6026 4.9149 0.0659 9 7 5.9270 3.9784 0.9266 10 6 5.3075 2.7932 0.9403 11 6 5.6788 1.8173 1.8829 12 1 5.1823 0.8583 1.8915 13 6 6.6921 2.0894 2.8102 14 7 7.2936 3.2506 2.7996 15 14 7.1848 0.7939 4.0624 16 1 7.6623 -0.4216 3.3555 17 1 8.2724 1.3251 4.9226 18 1 6.0114 0.4479 4.9045 19 6 4.3433 0.0468 0.0001 20 6 3.6862 -1.1962 0.0001 21 6 4.1025 -2.5185 0.0002 22 7 3.0086 -3.2922 -0.0003 23 1 3.0132 -4.2622 -0.0008 24 7 1.8588 -2.4951 -0.0065 25 6 2.2144 -1.2246 -0.0006 26 1 -0.3634 -0.0004 1.0276 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3634 -0.8898 -0.5141 29 1 1.6301 2.0982 0.0004 30 1 3.1481 3.3354 -1.6471 31 1 4.3521 5.4991 -1.5785 32 1 6.1243 5.8603 0.0916 33 1 7.9958 3.4389 3.4418 34 1 5.4223 0.0935 0.0001 35 1 5.1259 -2.8634 0.0007 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241516104.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:54 Heat of formation + Delta-G solvation = 100.888470 kcal Electronic energy + Delta-G solvation = -20603.247118 eV Core-core repulsion = 17566.460727 eV Total energy + Delta-G solvation = -3036.786392 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.08253 -40.11780 -38.06659 -35.52162 -34.46450 -32.59385 -31.92452 -31.57541 -29.67061 -27.57445 -27.31480 -24.73425 -23.82906 -23.03561 -21.52558 -20.67656 -19.31335 -18.84189 -17.74024 -17.29187 -16.60772 -16.09670 -15.96831 -15.79874 -15.33081 -14.65558 -14.40982 -14.15193 -14.12304 -13.94609 -13.76962 -13.29258 -12.90994 -12.85399 -12.71092 -12.67613 -12.36009 -12.21464 -12.01658 -11.57806 -11.22798 -11.13627 -10.96738 -10.07891 -9.69226 -9.43339 -9.30698 -8.29388 -8.10045 -6.38713 -0.24833 0.66710 1.06583 1.32850 1.39966 1.51478 1.56635 1.60457 1.94639 2.23250 2.88197 2.99642 3.43913 3.78718 3.99832 4.12118 4.31006 4.39326 4.44203 4.49999 4.59107 4.70150 4.81110 4.83759 4.87037 4.91369 5.03636 5.12505 5.24895 5.40922 5.49319 5.61857 5.70030 5.75639 5.86182 6.10551 6.12290 6.26717 6.37416 6.39453 6.69960 6.78868 7.05900 8.24099 8.47139 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.014237 B = 0.007174 C = 0.005221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.227361 B = 3901.878150 C = 5361.316935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.096 4.096 3 C -0.071 4.071 4 C -0.047 4.047 5 C -0.227 4.227 6 C -0.048 4.048 7 C -0.311 4.311 8 C 0.104 3.896 9 N -0.521 5.521 10 C 0.234 3.766 11 C -0.448 4.448 12 H 0.097 0.903 13 C 0.025 3.975 14 N -0.753 5.753 15 Si 0.974 3.026 16 H -0.249 1.249 17 H -0.270 1.270 18 H -0.266 1.266 19 C -0.051 4.051 20 C -0.225 4.225 21 C 0.099 3.901 22 N -0.411 5.411 23 H 0.460 0.540 24 N -0.338 5.338 25 C 0.087 3.913 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.127 0.873 30 H 0.123 0.877 31 H 0.125 0.875 32 H 0.135 0.865 33 H 0.278 0.722 34 H 0.116 0.884 35 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.278 -11.023 -3.648 12.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.100 4.100 3 C -0.093 4.093 4 C -0.049 4.049 5 C -0.231 4.231 6 C -0.072 4.072 7 C -0.334 4.334 8 C -0.062 4.062 9 N -0.233 5.233 10 C 0.110 3.890 11 C -0.479 4.479 12 H 0.115 0.885 13 C -0.197 4.197 14 N -0.375 5.375 15 Si 0.794 3.206 16 H -0.173 1.173 17 H -0.194 1.194 18 H -0.190 1.190 19 C -0.072 4.072 20 C -0.235 4.235 21 C -0.059 4.059 22 N -0.114 5.114 23 H 0.308 0.692 24 N -0.168 5.168 25 C -0.065 4.065 26 H 0.088 0.912 27 H 0.098 0.902 28 H 0.084 0.916 29 H 0.145 0.855 30 H 0.141 0.859 31 H 0.143 0.857 32 H 0.152 0.848 33 H 0.089 0.911 34 H 0.134 0.866 35 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -5.485 -11.621 -2.922 13.178 hybrid contribution 0.550 0.069 -0.053 0.557 sum -4.936 -11.551 -2.975 12.909 Atomic orbital electron populations 1.20622 0.89124 1.03041 1.02435 1.18774 0.96631 0.88695 1.05851 1.20730 0.93018 0.97372 0.98224 1.18292 0.92395 0.91827 1.02402 1.19643 1.04513 0.95589 1.03391 1.21260 0.97289 0.92572 0.96125 1.21529 1.05496 0.99722 1.06642 1.23002 0.94140 0.97783 0.91279 1.68712 1.28896 1.01783 1.23927 1.18983 0.88204 0.90536 0.91251 1.19964 1.15552 1.00909 1.11452 0.88498 1.26982 0.95296 0.97825 0.99567 1.70252 1.15837 1.21988 1.29399 0.85386 0.78530 0.78927 0.77762 1.17272 1.19392 1.19019 1.20626 0.98832 0.89580 0.98126 1.19879 0.93424 0.94178 1.16002 1.23347 0.94905 0.89273 0.98386 1.46216 1.03107 1.10609 1.51428 0.69230 1.77388 1.05697 1.01261 1.32479 1.20964 0.93309 0.92399 0.99831 0.91221 0.90223 0.91630 0.85534 0.85887 0.85698 0.84780 0.91146 0.86584 0.75313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.56 10.01 71.23 0.71 -1.85 16 2 C -0.10 -3.31 5.89 -19.78 -0.12 -3.43 16 3 C -0.07 -2.69 8.98 22.24 0.20 -2.49 16 4 C -0.05 -2.02 5.04 -20.09 -0.10 -2.12 16 5 C -0.23 -10.98 5.49 -19.52 -0.11 -11.08 16 6 C -0.05 -2.12 9.61 22.67 0.22 -1.91 16 7 C -0.31 -13.54 10.10 22.48 0.23 -13.32 16 8 C 0.10 5.05 11.17 84.98 0.95 6.00 16 9 N -0.52 -29.18 7.85 -188.38 -1.48 -30.65 16 10 C 0.23 12.85 6.55 40.36 0.26 13.11 16 11 C -0.45 -23.84 7.92 23.30 0.18 -23.65 16 12 H 0.10 4.90 5.25 -2.91 -0.02 4.88 16 13 C 0.03 1.28 5.50 85.28 0.47 1.75 16 14 N -0.75 -40.54 11.46 21.84 0.25 -40.29 16 15 Si 0.97 37.77 29.56 68.60 2.03 39.80 16 16 H -0.25 -8.97 7.11 99.48 0.71 -8.26 16 17 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 18 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 19 C -0.05 -2.05 7.59 22.92 0.17 -1.88 16 20 C -0.23 -7.70 6.32 -20.25 -0.13 -7.83 16 21 C 0.10 2.31 12.10 84.46 1.02 3.33 16 22 N -0.41 -8.86 7.18 -56.11 -0.40 -9.26 16 23 H 0.46 5.44 8.96 -213.44 -1.91 3.53 16 24 N -0.34 -10.41 12.69 -48.53 -0.62 -11.03 16 25 C 0.09 3.05 7.18 42.27 0.30 3.36 16 26 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.08 1.83 8.08 -2.38 -0.02 1.81 16 28 H 0.06 1.69 8.10 -2.39 -0.02 1.67 16 29 H 0.13 4.42 8.00 -2.91 -0.02 4.40 16 30 H 0.12 4.64 8.06 -2.91 -0.02 4.61 16 31 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 32 H 0.13 5.78 8.06 -2.91 -0.02 5.75 16 33 H 0.28 13.59 8.29 -92.71 -0.77 12.82 16 34 H 0.12 4.84 7.21 -2.91 -0.02 4.82 16 35 H 0.23 3.07 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -70.18 303.74 3.28 -66.90 By element: Atomic # 1 Polarization: 27.30 SS G_CDS: -0.77 Total: 26.53 kcal Atomic # 6 Polarization: -46.26 SS G_CDS: 4.27 Total: -41.99 kcal Atomic # 7 Polarization: -88.98 SS G_CDS: -2.25 Total: -91.23 kcal Atomic # 14 Polarization: 37.77 SS G_CDS: 2.03 Total: 39.80 kcal Total: -70.18 3.28 -66.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241516104.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.786 kcal (2) G-P(sol) polarization free energy of solvation -70.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds