Wall clock time and date at job start Wed Apr 15 2020 11:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38232 * 119.99258 * 2 1 4 4 C 1.38333 * 119.98519 * 180.02562 * 3 2 1 5 5 Cl 1.73598 * 120.01574 * 180.02562 * 4 3 2 6 6 C 1.38384 * 119.97260 * 359.97438 * 4 3 2 7 7 C 1.38190 * 119.98676 * 0.02562 * 6 4 3 8 8 C 1.50695 * 119.99381 * 179.97438 * 7 6 4 9 9 N 1.46904 * 109.46951 * 90.00299 * 8 7 6 10 10 C 1.46900 * 111.00269 * 179.97438 * 9 8 7 11 11 C 1.52998 * 109.46884 * 174.87541 * 10 9 8 12 12 C 1.50705 * 115.55206 * 296.30337 * 11 10 9 13 13 H 1.08003 * 119.99437 * 95.20908 * 12 11 10 14 14 C 1.37877 * 120.00329 * 274.93418 * 12 11 10 15 15 N 1.31515 * 119.99732 * 355.41631 * 14 12 11 16 16 Si 1.86797 * 119.99830 * 175.41408 * 14 12 11 17 17 H 1.48503 * 109.46755 * 90.00110 * 16 14 12 18 18 H 1.48502 * 109.46887 * 209.99551 * 16 14 12 19 19 H 1.48498 * 109.47472 * 329.99881 * 16 14 12 20 20 C 1.53001 * 117.50130 * 81.98067 * 11 10 9 21 21 C 1.53000 * 117.49451 * 150.64227 * 11 10 9 22 22 C 1.38224 * 119.98895 * 180.25229 * 2 1 3 23 23 H 1.08998 * 109.47369 * 90.00205 * 1 2 3 24 24 H 1.09000 * 109.47174 * 210.00387 * 1 2 3 25 25 H 1.08999 * 109.46975 * 330.00282 * 1 2 3 26 26 H 1.07995 * 120.01490 * 0.02562 * 3 2 1 27 27 H 1.07993 * 120.00370 * 180.02562 * 6 4 3 28 28 H 1.09003 * 109.47471 * 330.00602 * 8 7 6 29 29 H 1.08996 * 109.47373 * 209.99754 * 8 7 6 30 30 H 1.00904 * 111.00100 * 56.04793 * 9 8 7 31 31 H 1.09002 * 109.46699 * 54.87769 * 10 9 8 32 32 H 1.08993 * 109.47270 * 294.87686 * 10 9 8 33 33 H 0.96996 * 119.99571 * 180.02562 * 15 14 12 34 34 H 1.08998 * 117.50117 * 214.99752 * 20 11 10 35 35 H 1.09002 * 117.49567 * 0.02562 * 20 11 10 36 36 H 1.08997 * 117.50075 * 359.97337 * 21 11 10 37 37 H 1.09002 * 117.49945 * 144.97567 * 21 11 10 38 38 H 1.08002 * 119.99277 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1972 0.0000 4 6 3.5814 1.1970 -0.0005 5 17 4.4500 2.7001 0.0001 6 6 4.2725 -0.0018 -0.0005 7 6 3.5806 -1.1980 -0.0005 8 6 4.3331 -2.5036 -0.0011 9 7 4.5781 -2.9282 1.3837 10 6 5.3109 -4.2008 1.4225 11 6 5.6584 -4.5452 2.8721 12 6 6.5891 -3.5826 3.5637 13 1 6.1873 -2.7883 4.1754 14 6 7.9536 -3.7193 3.4202 15 7 8.4456 -4.7414 2.7548 16 14 9.1032 -2.4527 4.1709 17 1 9.4575 -2.8637 5.5533 18 1 10.3378 -2.3574 3.3511 19 1 8.4284 -1.1304 4.2052 20 6 4.5725 -5.2104 3.7201 21 6 5.7747 -6.0262 3.2379 22 6 2.1979 -1.1972 -0.0053 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 -0.8899 0.5139 25 1 -0.3633 0.8900 0.5138 26 1 1.6582 2.1325 0.0004 27 1 5.3525 -0.0025 -0.0005 28 1 5.2855 -2.3739 -0.5152 29 1 3.7433 -3.2627 -0.5148 30 1 3.7138 -2.9932 1.9003 31 1 6.2282 -4.1096 0.8407 32 1 4.6898 -4.9907 1.0002 33 1 9.4055 -4.8377 2.6541 34 1 4.5311 -4.9519 4.7781 35 1 3.6105 -5.4031 3.2450 36 1 5.6031 -6.7552 2.4459 37 1 6.5244 -6.3044 3.9785 38 1 1.6576 -2.1323 -0.0098 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339385270.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:08 Heat of formation + Delta-G solvation = 31.303570 kcal Electronic energy + Delta-G solvation = -18888.569231 eV Core-core repulsion = 15949.872906 eV Total energy + Delta-G solvation = -2938.696325 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.58002 -37.05927 -36.47789 -34.79283 -32.54771 -31.78535 -30.82013 -27.15142 -26.48057 -25.24054 -23.26501 -21.98817 -21.03586 -20.55372 -18.96037 -16.70582 -16.17498 -15.82821 -15.30039 -14.82218 -14.37713 -14.30552 -13.71811 -13.54325 -13.47222 -13.18700 -12.80069 -12.66522 -12.45848 -12.03166 -11.66123 -11.36251 -11.28365 -11.13848 -11.05463 -10.85195 -10.72685 -10.65939 -10.39784 -10.11579 -9.36080 -8.90228 -8.72468 -8.60744 -8.30000 -8.00395 -7.58751 -5.91282 -3.93247 1.18248 1.27978 2.15269 3.37097 3.44049 3.50391 3.58889 4.51673 4.65802 4.67952 5.00258 5.05345 5.17702 5.28343 5.33510 5.38790 5.43305 5.48496 5.57593 5.67514 5.80608 5.96907 6.03831 6.18318 6.26055 6.32755 6.39969 6.49688 6.56460 6.66065 6.77086 6.83127 6.89282 7.17704 7.53116 7.56582 7.90911 8.01161 8.11245 8.59010 9.05871 9.69944 11.17892 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.015795 B = 0.004799 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.291909 B = 5832.752018 C = 7136.111338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.078 4.078 3 C -0.119 4.119 4 C -0.030 4.030 5 Cl -0.077 7.077 6 C -0.091 4.091 7 C -0.052 4.052 8 C 0.095 3.905 9 N -0.662 5.662 10 C 0.108 3.892 11 C 0.048 3.952 12 C -0.466 4.466 13 H 0.058 0.942 14 C 0.067 3.933 15 N -0.888 5.888 16 Si 0.887 3.113 17 H -0.284 1.284 18 H -0.288 1.288 19 H -0.273 1.273 20 C -0.217 4.217 21 C -0.152 4.152 22 C -0.112 4.112 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.128 0.872 27 H 0.136 0.864 28 H 0.080 0.920 29 H 0.030 0.970 30 H 0.332 0.668 31 H 0.073 0.927 32 H -0.003 1.003 33 H 0.257 0.743 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.084 0.916 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.435 8.581 -8.000 17.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.079 4.079 3 C -0.138 4.138 4 C -0.056 4.056 5 Cl -0.048 7.048 6 C -0.110 4.110 7 C -0.053 4.053 8 C -0.034 4.034 9 N -0.292 5.292 10 C -0.021 4.021 11 C 0.047 3.953 12 C -0.504 4.504 13 H 0.076 0.924 14 C -0.135 4.135 15 N -0.526 5.526 16 Si 0.715 3.285 17 H -0.210 1.210 18 H -0.214 1.214 19 H -0.198 1.198 20 C -0.254 4.254 21 C -0.190 4.190 22 C -0.131 4.131 23 H 0.089 0.911 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.146 0.854 27 H 0.154 0.846 28 H 0.098 0.902 29 H 0.048 0.952 30 H 0.149 0.851 31 H 0.091 0.909 32 H 0.015 0.985 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.103 0.897 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -12.591 9.010 -7.999 17.427 hybrid contribution 0.189 0.130 0.132 0.265 sum -12.401 9.140 -7.866 17.298 Atomic orbital electron populations 1.20770 0.90729 1.02998 1.02327 1.19757 0.96108 0.92362 0.99638 1.20823 0.91875 0.98423 1.02685 1.20886 0.92306 0.87042 1.05403 1.98360 1.76932 1.32554 1.97001 1.20994 1.00909 0.89945 0.99194 1.19867 0.93176 0.95066 0.97166 1.20916 0.98694 0.91307 0.92444 1.60330 1.25434 1.33906 1.09507 1.21567 0.95938 0.86062 0.98516 1.18832 0.94584 0.91814 0.90041 1.20283 0.89482 1.12082 1.28565 0.92374 1.24926 0.98073 0.95155 0.95310 1.70015 1.12156 1.28504 1.41890 0.86681 0.80446 0.82534 0.78852 1.21008 1.21425 1.19755 1.22995 0.92466 1.09920 1.00031 1.22493 0.98423 0.95763 1.02301 1.21039 0.93647 0.97695 1.00738 0.91137 0.91258 0.91465 0.85422 0.84614 0.90176 0.95162 0.85060 0.90855 0.98512 0.93377 0.90578 0.92322 0.92331 0.89718 0.85796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 10.01 36.01 0.36 -0.54 16 2 C -0.08 -0.88 5.88 -104.63 -0.62 -1.49 16 3 C -0.12 -1.40 9.49 -39.55 -0.38 -1.78 16 4 C -0.03 -0.40 6.32 -39.49 -0.25 -0.65 16 5 Cl -0.08 -0.99 28.96 -51.86 -1.50 -2.49 16 6 C -0.09 -1.33 9.49 -39.55 -0.38 -1.71 16 7 C -0.05 -0.74 5.39 -104.63 -0.56 -1.30 16 8 C 0.10 1.48 5.80 -4.98 -0.03 1.46 16 9 N -0.66 -12.56 6.34 -115.06 -0.73 -13.29 16 10 C 0.11 2.33 5.51 -3.83 -0.02 2.31 16 11 C 0.05 1.16 1.64 -155.66 -0.25 0.91 16 12 C -0.47 -12.71 8.71 -34.44 -0.30 -13.01 16 13 H 0.06 1.63 7.82 -52.48 -0.41 1.22 16 14 C 0.07 1.84 5.43 -17.82 -0.10 1.75 16 15 N -0.89 -25.21 12.65 55.43 0.70 -24.51 16 16 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 17 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 20 C -0.22 -4.69 9.96 -26.69 -0.27 -4.96 16 21 C -0.15 -3.57 9.15 -26.69 -0.24 -3.82 16 22 C -0.11 -1.38 9.36 -39.57 -0.37 -1.75 16 23 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 25 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 26 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 27 H 0.14 2.04 8.06 -52.49 -0.42 1.62 16 28 H 0.08 1.28 8.09 -51.93 -0.42 0.86 16 29 H 0.03 0.43 8.08 -51.93 -0.42 0.01 16 30 H 0.33 5.99 8.78 -39.29 -0.34 5.64 16 31 H 0.07 1.76 8.13 -51.93 -0.42 1.34 16 32 H 0.00 -0.06 8.10 -51.93 -0.42 -0.48 16 33 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 34 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.08 2.16 8.14 -51.93 -0.42 1.74 16 38 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 LS Contribution 339.30 15.07 5.11 5.11 Total: -1.00 -28.46 339.30 -10.63 -39.09 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -5.79 Total: 4.05 kcal Atomic # 6 Polarization: -21.19 SS G_CDS: -3.40 Total: -24.59 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: -0.03 Total: -37.80 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -1.50 Total: -2.49 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.46 -10.63 -39.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339385270.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.394 kcal (2) G-P(sol) polarization free energy of solvation -28.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds