Wall clock time and date at job start Wed Apr 15 2020 11:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38232 * 119.99258 * 2 1 4 4 C 1.38333 * 119.98519 * 180.02562 * 3 2 1 5 5 Cl 1.73598 * 120.01574 * 180.02562 * 4 3 2 6 6 C 1.38384 * 119.97260 * 359.97438 * 4 3 2 7 7 C 1.38190 * 119.98676 * 0.02562 * 6 4 3 8 8 C 1.50695 * 119.99381 * 179.97438 * 7 6 4 9 9 N 1.46904 * 109.46951 * 90.00299 * 8 7 6 10 10 C 1.46900 * 111.00269 * 179.97438 * 9 8 7 11 11 C 1.52998 * 109.46884 * 174.87541 * 10 9 8 12 12 C 1.50705 * 115.55206 * 296.30337 * 11 10 9 13 13 H 1.08003 * 119.99437 * 95.20908 * 12 11 10 14 14 C 1.37877 * 120.00329 * 274.93418 * 12 11 10 15 15 N 1.31515 * 119.99732 * 355.41631 * 14 12 11 16 16 Si 1.86797 * 119.99830 * 175.41408 * 14 12 11 17 17 H 1.48503 * 109.46755 * 90.00110 * 16 14 12 18 18 H 1.48502 * 109.46887 * 209.99551 * 16 14 12 19 19 H 1.48498 * 109.47472 * 329.99881 * 16 14 12 20 20 C 1.53001 * 117.50130 * 81.98067 * 11 10 9 21 21 C 1.53000 * 117.49451 * 150.64227 * 11 10 9 22 22 C 1.38224 * 119.98895 * 180.25229 * 2 1 3 23 23 H 1.08998 * 109.47369 * 90.00205 * 1 2 3 24 24 H 1.09000 * 109.47174 * 210.00387 * 1 2 3 25 25 H 1.08999 * 109.46975 * 330.00282 * 1 2 3 26 26 H 1.07995 * 120.01490 * 0.02562 * 3 2 1 27 27 H 1.07993 * 120.00370 * 180.02562 * 6 4 3 28 28 H 1.09003 * 109.47471 * 330.00602 * 8 7 6 29 29 H 1.08996 * 109.47373 * 209.99754 * 8 7 6 30 30 H 1.00904 * 111.00100 * 56.04793 * 9 8 7 31 31 H 1.09002 * 109.46699 * 54.87769 * 10 9 8 32 32 H 1.08993 * 109.47270 * 294.87686 * 10 9 8 33 33 H 0.96996 * 119.99571 * 180.02562 * 15 14 12 34 34 H 1.08998 * 117.50117 * 214.99752 * 20 11 10 35 35 H 1.09002 * 117.49567 * 0.02562 * 20 11 10 36 36 H 1.08997 * 117.50075 * 359.97337 * 21 11 10 37 37 H 1.09002 * 117.49945 * 144.97567 * 21 11 10 38 38 H 1.08002 * 119.99277 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1972 0.0000 4 6 3.5814 1.1970 -0.0005 5 17 4.4500 2.7001 0.0001 6 6 4.2725 -0.0018 -0.0005 7 6 3.5806 -1.1980 -0.0005 8 6 4.3331 -2.5036 -0.0011 9 7 4.5781 -2.9282 1.3837 10 6 5.3109 -4.2008 1.4225 11 6 5.6584 -4.5452 2.8721 12 6 6.5891 -3.5826 3.5637 13 1 6.1873 -2.7883 4.1754 14 6 7.9536 -3.7193 3.4202 15 7 8.4456 -4.7414 2.7548 16 14 9.1032 -2.4527 4.1709 17 1 9.4575 -2.8637 5.5533 18 1 10.3378 -2.3574 3.3511 19 1 8.4284 -1.1304 4.2052 20 6 4.5725 -5.2104 3.7201 21 6 5.7747 -6.0262 3.2379 22 6 2.1979 -1.1972 -0.0053 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 -0.8899 0.5139 25 1 -0.3633 0.8900 0.5138 26 1 1.6582 2.1325 0.0004 27 1 5.3525 -0.0025 -0.0005 28 1 5.2855 -2.3739 -0.5152 29 1 3.7433 -3.2627 -0.5148 30 1 3.7138 -2.9932 1.9003 31 1 6.2282 -4.1096 0.8407 32 1 4.6898 -4.9907 1.0002 33 1 9.4055 -4.8377 2.6541 34 1 4.5311 -4.9519 4.7781 35 1 3.6105 -5.4031 3.2450 36 1 5.6031 -6.7552 2.4459 37 1 6.5244 -6.3044 3.9785 38 1 1.6576 -2.1323 -0.0098 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339385270.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:06 Heat of formation + Delta-G solvation = 17.007629 kcal Electronic energy + Delta-G solvation = -18889.189149 eV Core-core repulsion = 15949.872906 eV Total energy + Delta-G solvation = -2939.316244 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 2.35 seconds Orbital eigenvalues (eV) -40.57432 -38.77324 -37.51650 -36.17002 -33.91239 -33.50445 -31.94135 -28.15180 -27.83574 -27.11019 -24.74441 -23.01591 -22.77971 -21.65787 -20.84184 -18.14749 -17.55465 -17.01255 -16.63283 -16.34864 -16.05320 -15.62202 -15.11900 -15.03762 -14.66988 -14.22328 -14.08551 -13.64756 -13.47492 -13.26376 -13.13352 -13.08282 -12.81534 -12.62601 -12.38747 -12.26889 -12.17900 -12.09240 -11.97146 -11.75516 -11.20774 -10.87460 -10.31497 -9.93640 -9.69137 -9.56910 -9.05048 -8.02512 -6.08523 0.19550 0.29271 1.15011 1.40499 1.43412 1.53230 2.47878 2.58650 3.27498 3.39514 3.68207 3.77255 3.85818 4.11798 4.23589 4.30472 4.39300 4.42071 4.53884 4.62288 4.69956 4.75007 4.82126 4.86138 4.88909 4.98731 5.01907 5.08823 5.23763 5.28151 5.33200 5.49732 5.58934 5.70282 5.73119 5.88134 5.89708 6.32789 6.51444 6.72764 6.94602 7.56480 9.05757 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.015795 B = 0.004799 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.291909 B = 5832.752018 C = 7136.111338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.073 4.073 3 C -0.119 4.119 4 C -0.040 4.040 5 Cl -0.078 7.078 6 C -0.114 4.114 7 C -0.064 4.064 8 C 0.101 3.899 9 N -0.675 5.675 10 C 0.123 3.877 11 C 0.020 3.980 12 C -0.476 4.476 13 H 0.044 0.956 14 C 0.023 3.977 15 N -0.912 5.912 16 Si 0.939 3.061 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.275 1.275 20 C -0.188 4.188 21 C -0.159 4.159 22 C -0.112 4.112 23 H 0.086 0.914 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.149 0.851 27 H 0.118 0.882 28 H 0.065 0.935 29 H 0.051 0.949 30 H 0.340 0.660 31 H 0.040 0.960 32 H 0.016 0.984 33 H 0.255 0.745 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.072 0.928 37 H 0.056 0.944 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.959 9.161 -8.272 20.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.073 4.073 3 C -0.137 4.137 4 C -0.067 4.067 5 Cl -0.049 7.049 6 C -0.133 4.133 7 C -0.065 4.065 8 C -0.027 4.027 9 N -0.306 5.306 10 C -0.006 4.006 11 C 0.019 3.981 12 C -0.514 4.514 13 H 0.062 0.938 14 C -0.176 4.176 15 N -0.551 5.551 16 Si 0.766 3.234 17 H -0.205 1.205 18 H -0.212 1.212 19 H -0.200 1.200 20 C -0.225 4.225 21 C -0.197 4.197 22 C -0.131 4.131 23 H 0.104 0.896 24 H 0.097 0.903 25 H 0.097 0.903 26 H 0.167 0.833 27 H 0.136 0.864 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.158 0.842 31 H 0.058 0.942 32 H 0.033 0.967 33 H 0.064 0.936 34 H 0.090 0.910 35 H 0.110 0.890 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -15.126 9.598 -8.266 19.730 hybrid contribution 0.907 -0.012 0.217 0.932 sum -14.219 9.586 -8.050 18.944 Atomic orbital electron populations 1.20852 0.88068 1.04105 1.03636 1.20154 0.97930 0.91548 0.97715 1.21147 0.91179 0.99808 1.01600 1.21001 0.93115 0.86640 1.05908 1.98354 1.77162 1.32345 1.97032 1.20964 1.00337 0.91037 1.01003 1.19762 0.94104 0.93958 0.98694 1.20848 0.98674 0.92648 0.90565 1.60180 1.25952 1.32572 1.11901 1.21198 0.95265 0.87851 0.96243 1.18966 0.95906 0.91477 0.91757 1.20502 0.90349 1.12177 1.28348 0.93811 1.25517 0.99407 0.96633 0.96008 1.70105 1.12170 1.29739 1.43124 0.85853 0.78774 0.80432 0.78311 1.20464 1.21228 1.19971 1.22975 0.92928 1.06978 0.99623 1.22386 0.99139 0.95889 1.02321 1.21270 0.92746 0.99143 0.99935 0.89584 0.90327 0.90260 0.83289 0.86363 0.91650 0.93145 0.84234 0.94160 0.96651 0.93568 0.90957 0.89027 0.90988 0.92532 0.83851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.34 10.01 71.24 0.71 -0.62 16 2 C -0.07 -1.42 5.88 -19.87 -0.12 -1.53 16 3 C -0.12 -2.53 9.49 22.29 0.21 -2.32 16 4 C -0.04 -1.05 6.32 22.33 0.14 -0.91 16 5 Cl -0.08 -1.95 28.96 -2.72 -0.08 -2.03 16 6 C -0.11 -3.36 9.49 22.29 0.21 -3.14 16 7 C -0.06 -1.78 5.39 -19.87 -0.11 -1.88 16 8 C 0.10 3.09 5.80 85.55 0.50 3.59 16 9 N -0.68 -25.20 6.34 -517.94 -3.29 -28.49 16 10 C 0.12 5.30 5.51 86.30 0.48 5.77 16 11 C 0.02 0.95 1.64 -52.93 -0.09 0.86 16 12 C -0.48 -26.23 8.71 25.60 0.22 -26.01 16 13 H 0.04 2.48 7.82 -2.91 -0.02 2.46 16 14 C 0.02 1.29 5.43 84.65 0.46 1.75 16 15 N -0.91 -52.80 12.65 21.45 0.27 -52.52 16 16 Si 0.94 45.14 29.54 68.60 2.03 47.17 16 17 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 18 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 19 H -0.27 -13.17 7.11 99.48 0.71 -12.46 16 20 C -0.19 -7.80 9.96 30.62 0.30 -7.50 16 21 C -0.16 -7.44 9.15 30.62 0.28 -7.16 16 22 C -0.11 -2.48 9.36 22.27 0.21 -2.28 16 23 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.08 0.85 8.09 -2.39 -0.02 0.83 16 25 H 0.08 0.80 8.09 -2.39 -0.02 0.78 16 26 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 27 H 0.12 3.77 8.06 -2.91 -0.02 3.75 16 28 H 0.07 2.15 8.09 -2.39 -0.02 2.13 16 29 H 0.05 1.34 8.08 -2.39 -0.02 1.32 16 30 H 0.34 11.68 8.78 -89.69 -0.79 10.89 16 31 H 0.04 1.97 8.13 -2.39 -0.02 1.95 16 32 H 0.02 0.60 8.10 -2.39 -0.02 0.58 16 33 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 34 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 35 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 36 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 37 H 0.06 2.93 8.14 -2.39 -0.02 2.91 16 38 H 0.14 2.56 8.06 -2.91 -0.02 2.54 16 Total: -1.00 -61.35 339.30 2.61 -58.74 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 0.26 Total: 18.51 kcal Atomic # 6 Polarization: -44.80 SS G_CDS: 3.41 Total: -41.38 kcal Atomic # 7 Polarization: -78.00 SS G_CDS: -3.01 Total: -81.01 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Atomic # 17 Polarization: -1.95 SS G_CDS: -0.08 Total: -2.03 kcal Total: -61.35 2.61 -58.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339385270.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.748 kcal (2) G-P(sol) polarization free energy of solvation -61.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.35 seconds