Wall clock time and date at job start Wed Apr 15 2020 11:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36237 * 120.06153 * 2 1 4 4 C 1.39970 * 120.11382 * 180.02562 * 3 2 1 5 5 C 1.47892 * 119.88336 * 179.97438 * 4 3 2 6 6 C 1.40271 * 119.87638 * 359.70219 * 5 4 3 7 7 C 1.36150 * 120.55552 * 179.75471 * 6 5 4 8 8 C 1.39947 * 119.97571 * 0.51798 * 7 6 5 9 9 N 1.34759 * 134.58886 * 179.76742 * 8 7 6 10 10 N 1.28642 * 109.28748 * 179.97438 * 9 8 7 11 11 N 1.28812 * 111.79710 * 359.97438 * 10 9 8 12 12 H 0.97002 * 125.94187 * 180.02562 * 11 10 9 13 13 C 1.37358 * 108.11959 * 359.97438 * 11 10 9 14 14 C 1.38621 * 134.90176 * 180.02562 * 13 11 10 15 15 C 1.40006 * 120.23438 * 359.94822 * 4 3 2 16 16 C 1.36203 * 120.11694 * 0.04870 * 15 4 3 17 17 C 1.40938 * 120.05578 * 180.02562 * 2 1 3 18 18 C 1.40998 * 120.11388 * 0.25753 * 17 2 1 19 19 H 1.08002 * 119.99879 * 333.34550 * 18 17 2 20 20 C 1.39998 * 119.99997 * 153.34653 * 18 17 2 21 21 N 1.30808 * 119.99530 * 343.84008 * 20 18 17 22 22 Si 1.86793 * 120.00245 * 163.84444 * 20 18 17 23 23 H 1.48510 * 109.46978 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47408 * 119.99433 * 22 20 18 25 25 H 1.48503 * 109.47200 * 240.00020 * 22 20 18 26 26 H 1.08999 * 109.47463 * 269.98442 * 1 2 3 27 27 H 1.08997 * 109.46663 * 29.98181 * 1 2 3 28 28 H 1.08998 * 109.47156 * 149.98107 * 1 2 3 29 29 H 1.07996 * 119.93892 * 0.02562 * 3 2 1 30 30 H 1.08003 * 119.71898 * 359.97438 * 6 5 4 31 31 H 1.07997 * 120.01104 * 180.23210 * 7 6 5 32 32 H 1.08007 * 120.24023 * 0.02562 * 14 13 11 33 33 H 1.07999 * 119.94236 * 180.02562 * 15 4 3 34 34 H 1.07995 * 120.05898 * 179.97438 * 16 15 4 35 35 H 0.97005 * 119.99021 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1894 1.1791 0.0000 4 6 3.5892 1.1804 -0.0005 5 6 4.3248 2.4633 -0.0011 6 6 3.6173 3.6745 -0.0074 7 6 4.2805 4.8636 -0.0030 8 6 5.6798 4.8837 -0.0030 9 7 6.6119 5.8570 -0.0034 10 7 7.7827 5.3240 -0.0027 11 7 7.7225 4.0373 -0.0014 12 1 8.4804 3.4318 -0.0003 13 6 6.3985 3.6716 -0.0006 14 6 5.7167 2.4646 0.0013 15 6 4.2952 -0.0286 0.0000 16 6 3.6226 -1.2129 0.0001 17 6 2.2129 -1.2199 -0.0005 18 6 1.5115 -2.4430 -0.0066 19 1 0.5161 -2.4968 0.4090 20 6 2.1054 -3.5878 -0.5512 21 7 3.1528 -3.4752 -1.3268 22 14 1.4023 -5.2760 -0.1706 23 1 0.2261 -5.1319 0.7245 24 1 0.9853 -5.9350 -1.4344 25 1 2.4366 -6.1031 0.5012 26 1 -0.3634 -0.0003 1.0276 27 1 -0.3632 0.8901 -0.5135 28 1 -0.3633 -0.8898 -0.5141 29 1 1.6495 2.1144 0.0004 30 1 2.5373 3.6637 -0.0123 31 1 3.7269 5.7909 -0.0042 32 1 6.2616 1.5321 0.0029 33 1 5.3752 -0.0221 0.0000 34 1 4.1681 -2.1449 0.0001 35 1 3.5640 -4.2684 -1.7044 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241942238.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:47 Heat of formation + Delta-G solvation = 100.662991 kcal Electronic energy + Delta-G solvation = -19971.048869 eV Core-core repulsion = 16934.252700 eV Total energy + Delta-G solvation = -3036.796169 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 2.88 seconds Orbital eigenvalues (eV) -44.05629 -40.14050 -38.47367 -35.65437 -34.79477 -33.60171 -32.29489 -31.38320 -30.22341 -28.05351 -26.62647 -24.85820 -24.14813 -23.39927 -22.37105 -21.04201 -19.41255 -19.17027 -18.49587 -17.21545 -17.15301 -16.67699 -16.02749 -15.44896 -15.17190 -14.95418 -14.74575 -14.35078 -13.90333 -13.61427 -13.45137 -13.19794 -13.14301 -12.91648 -12.81429 -12.62664 -12.56681 -12.34148 -12.16283 -12.00803 -11.72417 -11.33480 -11.14030 -11.05539 -10.10874 -9.53445 -9.25111 -8.77431 -8.59136 -6.28624 -0.47866 0.31680 0.89949 1.22574 1.35430 1.40713 1.54112 1.65122 1.68361 2.18372 2.57284 2.96877 3.12271 3.71305 3.76804 3.92382 4.02989 4.26551 4.27998 4.38674 4.49816 4.73282 4.79021 4.90474 5.04539 5.08372 5.10150 5.16132 5.21704 5.35718 5.39844 5.43421 5.63035 5.76532 5.78120 5.98812 6.09171 6.15918 6.25900 6.36448 6.66784 6.89804 7.02948 7.29529 8.25166 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.033414 B = 0.003825 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.773638 B = 7318.825248 C = 8074.744964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.215 4.215 3 C -0.062 4.062 4 C -0.201 4.201 5 C 0.043 3.957 6 C -0.121 4.121 7 C -0.044 4.044 8 C -0.037 4.037 9 N -0.275 5.275 10 N -0.044 5.044 11 N -0.409 5.409 12 H 0.465 0.535 13 C 0.042 3.958 14 C -0.149 4.149 15 C -0.083 4.083 16 C -0.194 4.194 17 C 0.092 3.908 18 C -0.471 4.471 19 H 0.087 0.913 20 C 0.035 3.965 21 N -0.813 5.813 22 Si 0.979 3.021 23 H -0.255 1.255 24 H -0.267 1.267 25 H -0.267 1.267 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.049 0.951 29 H 0.129 0.871 30 H 0.155 0.845 31 H 0.160 0.840 32 H 0.137 0.863 33 H 0.109 0.891 34 H 0.099 0.901 35 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.775 5.763 1.849 6.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.217 4.217 3 C -0.080 4.080 4 C -0.202 4.202 5 C 0.039 3.961 6 C -0.142 4.142 7 C -0.066 4.066 8 C -0.162 4.162 9 N -0.152 5.152 10 N -0.025 5.025 11 N -0.140 5.140 12 H 0.315 0.685 13 C -0.078 4.078 14 C -0.171 4.171 15 C -0.102 4.102 16 C -0.214 4.214 17 C 0.089 3.911 18 C -0.499 4.499 19 H 0.105 0.895 20 C -0.182 4.182 21 N -0.437 5.437 22 Si 0.800 3.200 23 H -0.178 1.178 24 H -0.192 1.192 25 H -0.192 1.192 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.068 0.932 29 H 0.146 0.854 30 H 0.173 0.827 31 H 0.177 0.823 32 H 0.155 0.845 33 H 0.127 0.873 34 H 0.117 0.883 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.831 6.935 1.691 7.679 hybrid contribution 0.050 -2.375 -0.064 2.377 sum 2.881 4.560 1.627 5.634 Atomic orbital electron populations 1.20414 0.91278 1.01417 1.00790 1.19891 0.96380 0.92826 1.12557 1.20638 0.92844 0.97122 0.97442 1.18224 0.92968 0.90761 1.18292 1.18836 0.91618 0.93075 0.92548 1.21140 1.01513 0.90232 1.01270 1.20135 0.88952 0.99717 0.97761 1.20251 0.96359 0.88995 1.10644 1.75151 0.94464 1.26548 1.19002 1.77767 1.18698 0.91125 1.14957 1.44725 1.07347 1.06292 1.55598 0.68511 1.19728 0.84824 0.97195 1.06048 1.20019 0.93406 0.94629 1.09038 1.20735 0.98381 0.92319 0.98744 1.20948 0.94832 0.96795 1.08805 1.17999 0.92398 0.93050 0.87604 1.19976 1.02587 0.93599 1.33744 0.89546 1.26813 0.94325 1.05046 0.91988 1.69873 1.18927 1.33501 1.21440 0.85190 0.79448 0.76135 0.79251 1.17788 1.19206 1.19156 0.92647 0.91653 0.93168 0.85379 0.82721 0.82279 0.84532 0.87325 0.88266 0.89917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.98 9.40 71.24 0.67 -2.31 16 2 C -0.22 -9.31 5.90 -19.67 -0.12 -9.43 16 3 C -0.06 -2.42 8.99 22.22 0.20 -2.22 16 4 C -0.20 -7.89 5.90 -19.87 -0.12 -8.01 16 5 C 0.04 1.43 5.88 -20.00 -0.12 1.31 16 6 C -0.12 -3.40 9.34 22.28 0.21 -3.19 16 7 C -0.04 -1.18 10.03 22.20 0.22 -0.96 16 8 C -0.04 -1.17 7.36 39.77 0.29 -0.87 16 9 N -0.27 -8.92 12.42 -52.35 -0.65 -9.57 16 10 N -0.04 -1.30 13.28 37.02 0.49 -0.80 16 11 N -0.41 -10.10 7.08 -51.69 -0.37 -10.47 16 12 H 0.47 7.44 8.96 -219.81 -1.97 5.47 16 13 C 0.04 1.25 7.40 39.03 0.29 1.54 16 14 C -0.15 -4.58 9.44 22.59 0.21 -4.37 16 15 C -0.08 -3.56 9.35 22.22 0.21 -3.36 16 16 C -0.19 -9.48 8.61 22.47 0.19 -9.29 16 17 C 0.09 4.54 5.56 -21.27 -0.12 4.43 16 18 C -0.47 -22.99 8.09 23.37 0.19 -22.80 16 19 H 0.09 4.03 6.88 -2.91 -0.02 4.01 16 20 C 0.04 1.62 5.15 85.27 0.44 2.06 16 21 N -0.81 -39.57 10.97 21.84 0.24 -39.33 16 22 Si 0.98 35.18 29.59 68.60 2.03 37.21 16 23 H -0.25 -8.90 7.11 99.48 0.71 -8.19 16 24 H -0.27 -9.29 7.11 99.48 0.71 -8.59 16 25 H -0.27 -9.34 7.11 99.48 0.71 -8.64 16 26 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.06 1.99 8.08 -2.39 -0.02 1.97 16 28 H 0.05 1.91 6.77 -2.39 -0.02 1.89 16 29 H 0.13 4.03 6.14 -2.91 -0.02 4.01 16 30 H 0.16 3.67 6.14 -2.91 -0.02 3.65 16 31 H 0.16 3.33 8.06 -2.91 -0.02 3.30 16 32 H 0.14 3.89 6.16 -2.91 -0.02 3.88 16 33 H 0.11 4.09 6.15 -2.91 -0.02 4.07 16 34 H 0.10 5.10 6.24 -2.91 -0.02 5.08 16 35 H 0.29 12.74 8.30 -92.70 -0.77 11.97 16 Total: -1.00 -58.30 297.08 3.59 -54.71 By element: Atomic # 1 Polarization: 26.53 SS G_CDS: -0.81 Total: 25.72 kcal Atomic # 6 Polarization: -60.13 SS G_CDS: 2.66 Total: -57.47 kcal Atomic # 7 Polarization: -59.88 SS G_CDS: -0.28 Total: -60.17 kcal Atomic # 14 Polarization: 35.18 SS G_CDS: 2.03 Total: 37.21 kcal Total: -58.30 3.59 -54.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241942238.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.372 kcal (2) G-P(sol) polarization free energy of solvation -58.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.89 seconds