Wall clock time and date at job start Wed Apr 15 2020 11:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36241 * 119.94027 * 2 1 4 4 C 1.40936 * 119.87879 * 179.97438 * 3 2 1 5 5 C 1.40996 * 120.10987 * 179.97438 * 4 3 2 6 6 H 1.08002 * 120.00376 * 24.69505 * 5 4 3 7 7 C 1.39999 * 119.99759 * 204.69888 * 5 4 3 8 8 N 1.30800 * 120.00390 * 17.96154 * 7 5 4 9 9 Si 1.86802 * 119.99870 * 197.96673 * 7 5 4 10 10 H 1.48499 * 109.47492 * 89.99842 * 9 7 5 11 11 H 1.48504 * 109.47393 * 209.99824 * 9 7 5 12 12 H 1.48502 * 109.46949 * 329.99458 * 9 7 5 13 13 C 1.40964 * 119.77552 * 0.02562 * 4 3 2 14 14 C 1.36201 * 119.88328 * 359.71258 * 13 4 3 15 15 C 1.39970 * 119.94427 * 179.97438 * 2 1 3 16 16 C 1.47888 * 119.88231 * 359.97438 * 15 2 1 17 17 C 1.40261 * 119.88178 * 310.00405 * 16 15 2 18 18 C 1.36149 * 120.55689 * 180.02562 * 17 16 15 19 19 C 1.39946 * 119.98093 * 359.96929 * 18 17 16 20 20 N 1.34759 * 134.59538 * 180.02562 * 19 18 17 21 21 N 1.28642 * 109.28963 * 179.97438 * 20 19 18 22 22 N 1.28810 * 111.79782 * 0.02562 * 21 20 19 23 23 H 0.97005 * 125.94209 * 180.26022 * 22 21 20 24 24 C 1.37372 * 108.11861 * 359.97438 * 22 21 20 25 25 C 1.38605 * 134.89630 * 179.97438 * 24 22 21 26 26 H 1.08996 * 109.47142 * 270.01802 * 1 2 3 27 27 H 1.09007 * 109.47016 * 30.02416 * 1 2 3 28 28 H 1.09002 * 109.46917 * 150.01994 * 1 2 3 29 29 H 1.07997 * 120.05969 * 359.97438 * 3 2 1 30 30 H 0.96998 * 120.00410 * 179.97438 * 8 7 5 31 31 H 1.08005 * 120.05929 * 180.02562 * 13 4 3 32 32 H 1.08000 * 119.94806 * 180.30030 * 14 13 4 33 33 H 1.07997 * 119.71869 * 359.97438 * 17 16 15 34 34 H 1.08001 * 120.00979 * 179.97438 * 18 17 16 35 35 H 1.08007 * 120.25073 * 0.02993 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1869 1.1806 0.0000 4 6 3.5963 1.1791 0.0005 5 6 4.3049 2.3980 0.0000 6 1 3.8416 3.2923 0.3900 7 6 5.6092 2.4492 -0.5061 8 7 6.0467 1.4933 -1.2845 9 14 6.7248 3.8825 -0.0698 10 1 7.4827 3.5616 1.1662 11 1 7.6757 4.1269 -1.1840 12 1 5.9030 5.0988 0.1552 13 6 4.2950 -0.0452 0.0005 14 6 3.6058 -1.2199 0.0059 15 6 2.2056 -1.2129 0.0005 16 6 1.4623 -2.4914 0.0017 17 6 0.4356 -2.7019 0.9338 18 6 -0.2572 -3.8739 0.9475 19 6 0.0527 -4.8803 0.0258 20 7 -0.4243 -6.1160 -0.2219 21 7 0.2264 -6.6340 -1.2033 22 7 1.1290 -5.8333 -1.6543 23 1 1.7334 -6.0138 -2.3913 24 6 1.0826 -4.6769 -0.9144 25 6 1.7846 -3.4818 -0.9219 26 1 -0.3633 0.0003 1.0276 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3633 -0.8902 -0.5135 29 1 1.6470 2.1159 -0.0004 30 1 6.9503 1.5290 -1.6355 31 1 5.3751 -0.0517 0.0014 32 1 4.1400 -2.1585 0.0108 33 1 0.1932 -1.9282 1.6472 34 1 -1.0459 -4.0267 1.6694 35 1 2.5752 -3.3197 -1.6397 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241942878.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:53 Heat of formation + Delta-G solvation = 113.796749 kcal Electronic energy + Delta-G solvation = -20106.742039 eV Core-core repulsion = 17070.515392 eV Total energy + Delta-G solvation = -3036.226647 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.87725 -38.71904 -36.94186 -34.19277 -33.55979 -31.61668 -31.14212 -30.16012 -28.82499 -25.99640 -25.53770 -23.56022 -22.52709 -22.15763 -20.52610 -20.11920 -18.06403 -17.54656 -17.05853 -15.97780 -15.47766 -15.33341 -14.56350 -13.95871 -13.87839 -13.80095 -13.29596 -12.80466 -12.54050 -12.16153 -12.00457 -11.85816 -11.65129 -11.61352 -11.45478 -11.19765 -11.09152 -10.91873 -10.71110 -10.55064 -10.34199 -9.82565 -9.58597 -9.37418 -8.59565 -8.17773 -7.58949 -7.25017 -6.99220 -4.53510 0.82602 1.56110 2.38811 2.69860 2.75856 2.94120 2.95982 2.98596 3.07563 3.76148 3.94453 4.28044 4.43485 4.89551 5.13208 5.29506 5.42400 5.53198 5.55365 5.81696 5.88320 5.97835 6.16448 6.21128 6.24480 6.36851 6.49446 6.52592 6.75960 6.80180 6.88747 6.92674 7.06199 7.12314 7.18751 7.45578 7.73416 7.87369 7.94372 8.08343 8.42945 8.48736 8.66384 8.77274 9.93106 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.034639 B = 0.003856 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.132484 B = 7260.179515 C = 7840.264163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.030 4.030 3 C -0.227 4.227 4 C 0.122 3.878 5 C -0.448 4.448 6 H 0.082 0.918 7 C 0.075 3.925 8 N -0.779 5.779 9 Si 0.911 3.089 10 H -0.265 1.265 11 H -0.276 1.276 12 H -0.260 1.260 13 C -0.174 4.174 14 C -0.070 4.070 15 C -0.213 4.213 16 C 0.061 3.939 17 C -0.111 4.111 18 C -0.056 4.056 19 C -0.016 4.016 20 N -0.253 5.253 21 N -0.041 5.041 22 N -0.429 5.429 23 H 0.448 0.552 24 C 0.043 3.957 25 C -0.134 4.134 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.095 0.905 30 H 0.284 0.716 31 H 0.118 0.882 32 H 0.089 0.911 33 H 0.136 0.864 34 H 0.132 0.868 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.231 -5.199 0.481 6.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.030 4.030 3 C -0.247 4.247 4 C 0.119 3.881 5 C -0.476 4.476 6 H 0.100 0.900 7 C -0.145 4.145 8 N -0.402 5.402 9 Si 0.735 3.265 10 H -0.190 1.190 11 H -0.201 1.201 12 H -0.184 1.184 13 C -0.193 4.193 14 C -0.089 4.089 15 C -0.214 4.214 16 C 0.058 3.942 17 C -0.132 4.132 18 C -0.078 4.078 19 C -0.141 4.141 20 N -0.130 5.130 21 N -0.023 5.023 22 N -0.156 5.156 23 H 0.294 0.706 24 C -0.076 4.076 25 C -0.156 4.156 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.113 0.887 30 H 0.095 0.905 31 H 0.136 0.864 32 H 0.107 0.893 33 H 0.154 0.846 34 H 0.150 0.850 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.751 -6.657 0.242 8.183 hybrid contribution 1.632 1.455 -0.441 2.230 sum -3.120 -5.203 -0.199 6.069 Atomic orbital electron populations 1.20851 0.93659 1.01366 1.00902 1.19062 0.93540 0.92588 0.97835 1.20534 0.94159 0.95465 1.14494 1.17702 0.90968 0.93213 0.86237 1.19708 0.97504 0.96215 1.34192 0.89977 1.26014 0.98534 0.97483 0.92499 1.69809 1.17933 1.31646 1.20858 0.86252 0.79680 0.81343 0.79219 1.19027 1.20126 1.18382 1.20970 0.99745 0.91379 1.07225 1.20427 0.92265 0.97034 0.99153 1.17783 0.92451 0.89279 1.21930 1.18833 0.92157 0.92617 0.90640 1.21132 0.96169 0.96740 0.99165 1.19876 0.99971 0.90995 0.96977 1.19873 0.98648 0.94725 1.00846 1.75175 1.21170 1.07363 1.09330 1.77834 0.99185 1.17603 1.07641 1.44732 1.30071 1.11272 1.29546 0.70623 1.19781 1.01173 0.90668 0.95981 1.20158 1.02502 0.90599 1.02366 0.92263 0.92732 0.92473 0.88655 0.90454 0.86389 0.89253 0.84641 0.85041 0.85344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.80 8.42 36.00 0.30 -1.50 16 2 C -0.03 -0.61 5.83 -104.69 -0.61 -1.22 16 3 C -0.23 -5.10 9.36 -39.28 -0.37 -5.47 16 4 C 0.12 2.99 5.57 -106.80 -0.60 2.39 16 5 C -0.45 -10.97 9.03 -37.88 -0.34 -11.32 16 6 H 0.08 1.93 7.91 -52.49 -0.42 1.51 16 7 C 0.07 1.73 5.13 -17.33 -0.09 1.64 16 8 N -0.78 -18.62 10.96 55.55 0.61 -18.01 16 9 Si 0.91 17.26 29.60 -169.99 -5.03 12.23 16 10 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 11 H -0.28 -5.14 7.11 56.52 0.40 -4.73 16 12 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 13 C -0.17 -4.16 8.63 -39.28 -0.34 -4.50 16 14 C -0.07 -1.51 9.42 -39.65 -0.37 -1.88 16 15 C -0.21 -4.27 5.49 -104.63 -0.57 -4.84 16 16 C 0.06 1.06 4.71 -104.83 -0.49 0.56 16 17 C -0.11 -1.68 7.79 -39.57 -0.31 -1.99 16 18 C -0.06 -0.81 10.03 -39.69 -0.40 -1.21 16 19 C -0.02 -0.26 7.36 -84.93 -0.63 -0.89 16 20 N -0.25 -4.27 12.42 32.10 0.40 -3.87 16 21 N -0.04 -0.64 13.28 60.35 0.80 0.17 16 22 N -0.43 -5.64 7.08 32.31 0.23 -5.41 16 23 H 0.45 4.01 8.96 -190.23 -1.71 2.31 16 24 C 0.04 0.67 7.40 -84.23 -0.62 0.05 16 25 C -0.13 -2.15 9.51 -39.09 -0.37 -2.52 16 26 H 0.06 0.85 7.46 -51.93 -0.39 0.46 16 27 H 0.05 0.84 8.08 -51.93 -0.42 0.42 16 28 H 0.06 0.89 6.44 -51.93 -0.33 0.56 16 29 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 30 H 0.28 6.16 8.30 -40.82 -0.34 5.82 16 31 H 0.12 2.93 6.16 -52.48 -0.32 2.60 16 32 H 0.09 1.75 8.03 -52.49 -0.42 1.33 16 33 H 0.14 1.87 6.80 -52.49 -0.36 1.52 16 34 H 0.13 1.58 8.06 -52.49 -0.42 1.15 16 35 H 0.13 1.95 8.03 -52.48 -0.42 1.53 16 LS Contribution 300.62 15.07 4.53 4.53 Total: -1.00 -27.01 300.62 -9.03 -36.05 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -4.76 Total: 7.01 kcal Atomic # 6 Polarization: -26.88 SS G_CDS: -5.81 Total: -32.68 kcal Atomic # 7 Polarization: -29.17 SS G_CDS: 2.04 Total: -27.13 kcal Atomic # 14 Polarization: 17.26 SS G_CDS: -5.03 Total: 12.23 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -27.01 -9.03 -36.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241942878.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.844 kcal (2) G-P(sol) polarization free energy of solvation -27.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds