Wall clock time and date at job start Wed Apr 15 2020 11:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36241 * 119.94027 * 2 1 4 4 C 1.40936 * 119.87879 * 179.97438 * 3 2 1 5 5 C 1.40996 * 120.10987 * 179.97438 * 4 3 2 6 6 H 1.08002 * 120.00376 * 24.69505 * 5 4 3 7 7 C 1.39999 * 119.99759 * 204.69888 * 5 4 3 8 8 N 1.30800 * 120.00390 * 17.96154 * 7 5 4 9 9 Si 1.86802 * 119.99870 * 197.96673 * 7 5 4 10 10 H 1.48499 * 109.47492 * 89.99842 * 9 7 5 11 11 H 1.48504 * 109.47393 * 209.99824 * 9 7 5 12 12 H 1.48502 * 109.46949 * 329.99458 * 9 7 5 13 13 C 1.40964 * 119.77552 * 0.02562 * 4 3 2 14 14 C 1.36201 * 119.88328 * 359.71258 * 13 4 3 15 15 C 1.39970 * 119.94427 * 179.97438 * 2 1 3 16 16 C 1.47888 * 119.88231 * 359.97438 * 15 2 1 17 17 C 1.40261 * 119.88178 * 310.00405 * 16 15 2 18 18 C 1.36149 * 120.55689 * 180.02562 * 17 16 15 19 19 C 1.39946 * 119.98093 * 359.96929 * 18 17 16 20 20 N 1.34759 * 134.59538 * 180.02562 * 19 18 17 21 21 N 1.28642 * 109.28963 * 179.97438 * 20 19 18 22 22 N 1.28810 * 111.79782 * 0.02562 * 21 20 19 23 23 H 0.97005 * 125.94209 * 180.26022 * 22 21 20 24 24 C 1.37372 * 108.11861 * 359.97438 * 22 21 20 25 25 C 1.38605 * 134.89630 * 179.97438 * 24 22 21 26 26 H 1.08996 * 109.47142 * 270.01802 * 1 2 3 27 27 H 1.09007 * 109.47016 * 30.02416 * 1 2 3 28 28 H 1.09002 * 109.46917 * 150.01994 * 1 2 3 29 29 H 1.07997 * 120.05969 * 359.97438 * 3 2 1 30 30 H 0.96998 * 120.00410 * 179.97438 * 8 7 5 31 31 H 1.08005 * 120.05929 * 180.02562 * 13 4 3 32 32 H 1.08000 * 119.94806 * 180.30030 * 14 13 4 33 33 H 1.07997 * 119.71869 * 359.97438 * 17 16 15 34 34 H 1.08001 * 120.00979 * 179.97438 * 18 17 16 35 35 H 1.08007 * 120.25073 * 0.02993 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1869 1.1806 0.0000 4 6 3.5963 1.1791 0.0005 5 6 4.3049 2.3980 0.0000 6 1 3.8416 3.2923 0.3900 7 6 5.6092 2.4492 -0.5061 8 7 6.0467 1.4933 -1.2845 9 14 6.7248 3.8825 -0.0698 10 1 7.4827 3.5616 1.1662 11 1 7.6757 4.1269 -1.1840 12 1 5.9030 5.0988 0.1552 13 6 4.2950 -0.0452 0.0005 14 6 3.6058 -1.2199 0.0059 15 6 2.2056 -1.2129 0.0005 16 6 1.4623 -2.4914 0.0017 17 6 0.4356 -2.7019 0.9338 18 6 -0.2572 -3.8739 0.9475 19 6 0.0527 -4.8803 0.0258 20 7 -0.4243 -6.1160 -0.2219 21 7 0.2264 -6.6340 -1.2033 22 7 1.1290 -5.8333 -1.6543 23 1 1.7334 -6.0138 -2.3913 24 6 1.0826 -4.6769 -0.9144 25 6 1.7846 -3.4818 -0.9219 26 1 -0.3633 0.0003 1.0276 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3633 -0.8902 -0.5135 29 1 1.6470 2.1159 -0.0004 30 1 6.9503 1.5290 -1.6355 31 1 5.3751 -0.0517 0.0014 32 1 4.1400 -2.1585 0.0108 33 1 0.1932 -1.9282 1.6472 34 1 -1.0459 -4.0267 1.6694 35 1 2.5752 -3.3197 -1.6397 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241942878.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:52 Heat of formation + Delta-G solvation = 99.923348 kcal Electronic energy + Delta-G solvation = -20107.343634 eV Core-core repulsion = 17070.515392 eV Total energy + Delta-G solvation = -3036.828242 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.08869 -40.22150 -38.37560 -35.82305 -34.78724 -33.18263 -32.64814 -31.40489 -30.33014 -27.55098 -27.07194 -24.87885 -23.82212 -23.43002 -22.13100 -21.72201 -19.26454 -18.92785 -18.69310 -17.19879 -17.11676 -16.73549 -15.90073 -15.53232 -15.40924 -15.04054 -14.69003 -14.23675 -14.06476 -13.71113 -13.35851 -13.22784 -13.18628 -12.89370 -12.79937 -12.64707 -12.64235 -12.17386 -12.15781 -12.10465 -11.68909 -11.41490 -11.26923 -11.05052 -9.91736 -9.49626 -9.25585 -8.84855 -8.68286 -6.33419 -0.41803 0.33346 0.88875 1.20584 1.34593 1.39548 1.51598 1.55494 1.67673 2.18892 2.59751 2.81155 3.10870 3.67789 3.73651 3.91001 4.03719 4.27736 4.32960 4.41246 4.42250 4.62770 4.73964 4.95548 4.99208 5.07519 5.08379 5.14009 5.20830 5.29258 5.32316 5.50397 5.60688 5.73334 5.76632 5.97088 6.08441 6.13647 6.23927 6.37338 6.68252 6.90473 7.02950 7.27238 8.26375 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.034639 B = 0.003856 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.132484 B = 7260.179515 C = 7840.264163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.034 4.034 3 C -0.244 4.244 4 C 0.091 3.909 5 C -0.490 4.490 6 H 0.078 0.922 7 C 0.037 3.963 8 N -0.815 5.815 9 Si 0.981 3.019 10 H -0.262 1.262 11 H -0.268 1.268 12 H -0.257 1.257 13 C -0.198 4.198 14 C -0.076 4.076 15 C -0.199 4.199 16 C 0.041 3.959 17 C -0.105 4.105 18 C -0.049 4.049 19 C -0.025 4.025 20 N -0.276 5.276 21 N -0.039 5.039 22 N -0.406 5.406 23 H 0.466 0.534 24 C 0.035 3.965 25 C -0.125 4.125 26 H 0.084 0.916 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.098 0.902 30 H 0.290 0.710 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.151 0.849 34 H 0.160 0.840 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.613 -6.288 0.780 8.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.034 4.034 3 C -0.264 4.264 4 C 0.089 3.911 5 C -0.518 4.518 6 H 0.097 0.903 7 C -0.179 4.179 8 N -0.440 5.440 9 Si 0.801 3.199 10 H -0.187 1.187 11 H -0.193 1.193 12 H -0.181 1.181 13 C -0.218 4.218 14 C -0.095 4.095 15 C -0.200 4.200 16 C 0.037 3.963 17 C -0.126 4.126 18 C -0.071 4.071 19 C -0.150 4.150 20 N -0.153 5.153 21 N -0.021 5.021 22 N -0.137 5.137 23 H 0.316 0.684 24 C -0.085 4.085 25 C -0.147 4.147 26 H 0.102 0.898 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.117 0.883 30 H 0.101 0.899 31 H 0.117 0.883 32 H 0.122 0.878 33 H 0.169 0.831 34 H 0.178 0.822 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.139 -7.767 0.524 9.914 hybrid contribution 1.891 1.498 -0.579 2.481 sum -4.248 -6.270 -0.055 7.573 Atomic orbital electron populations 1.20866 0.90417 1.02176 1.02733 1.19498 0.95957 0.91741 0.96238 1.20723 0.93653 0.96735 1.15261 1.18028 0.92224 0.93609 0.87281 1.19905 0.99094 0.96349 1.36500 0.90343 1.26776 0.99329 1.00021 0.91788 1.69857 1.18576 1.33547 1.21975 0.85217 0.77634 0.78026 0.78989 1.18701 1.19281 1.18093 1.20910 0.99099 0.92380 1.09373 1.20643 0.93365 0.96773 0.98690 1.18063 0.92009 0.90829 1.19120 1.18719 0.93437 0.91699 0.92476 1.21192 0.95207 0.97417 0.98745 1.20142 1.00177 0.89963 0.96820 1.20270 0.98615 0.94881 1.01186 1.75191 1.22100 1.07833 1.10182 1.77790 0.99196 1.17739 1.07336 1.44776 1.29434 1.10197 1.29289 0.68443 1.19737 1.01254 0.91026 0.96504 1.20153 1.02144 0.90423 1.02015 0.89779 0.92034 0.91532 0.88349 0.89915 0.88265 0.87801 0.83088 0.82209 0.84925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.13 8.42 71.24 0.60 -2.53 16 2 C -0.03 -1.34 5.83 -19.91 -0.12 -1.46 16 3 C -0.24 -11.18 9.36 22.47 0.21 -10.97 16 4 C 0.09 4.67 5.57 -21.27 -0.12 4.55 16 5 C -0.49 -25.19 9.03 23.37 0.21 -24.98 16 6 H 0.08 3.89 7.91 -2.91 -0.02 3.87 16 7 C 0.04 1.79 5.13 85.27 0.44 2.23 16 8 N -0.81 -40.67 10.96 21.84 0.24 -40.43 16 9 Si 0.98 36.33 29.60 68.60 2.03 38.36 16 10 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 11 H -0.27 -9.47 7.11 99.48 0.71 -8.76 16 12 H -0.26 -9.28 7.11 99.48 0.71 -8.58 16 13 C -0.20 -9.89 8.63 22.46 0.19 -9.70 16 14 C -0.08 -3.30 9.42 22.23 0.21 -3.09 16 15 C -0.20 -7.76 5.49 -19.87 -0.11 -7.87 16 16 C 0.04 1.30 4.71 -20.00 -0.09 1.21 16 17 C -0.10 -2.82 7.79 22.28 0.17 -2.65 16 18 C -0.05 -1.25 10.03 22.20 0.22 -1.03 16 19 C -0.02 -0.72 7.36 39.77 0.29 -0.43 16 20 N -0.28 -8.58 12.42 -52.35 -0.65 -9.23 16 21 N -0.04 -1.10 13.28 37.02 0.49 -0.61 16 22 N -0.41 -9.55 7.08 -51.69 -0.37 -9.91 16 23 H 0.47 7.01 8.96 -219.81 -1.97 5.04 16 24 C 0.04 0.99 7.40 39.02 0.29 1.27 16 25 C -0.13 -3.72 9.51 22.59 0.21 -3.51 16 26 H 0.08 2.10 7.46 -2.39 -0.02 2.08 16 27 H 0.06 1.75 8.08 -2.38 -0.02 1.73 16 28 H 0.07 1.86 6.44 -2.39 -0.02 1.85 16 29 H 0.10 4.29 8.06 -2.91 -0.02 4.26 16 30 H 0.29 13.05 8.30 -92.71 -0.77 12.28 16 31 H 0.10 5.23 6.16 -2.91 -0.02 5.21 16 32 H 0.10 4.06 8.03 -2.91 -0.02 4.04 16 33 H 0.15 3.58 6.80 -2.91 -0.02 3.56 16 34 H 0.16 3.13 8.06 -2.91 -0.02 3.10 16 35 H 0.13 3.78 8.03 -2.91 -0.02 3.76 16 Total: -1.00 -59.64 300.62 3.54 -56.10 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: -0.83 Total: 24.68 kcal Atomic # 6 Polarization: -61.57 SS G_CDS: 2.62 Total: -58.96 kcal Atomic # 7 Polarization: -59.90 SS G_CDS: -0.29 Total: -60.18 kcal Atomic # 14 Polarization: 36.33 SS G_CDS: 2.03 Total: 38.36 kcal Total: -59.64 3.54 -56.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241942878.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.025 kcal (2) G-P(sol) polarization free energy of solvation -59.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds