Wall clock time and date at job start Wed Apr 15 2020 11:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36219 * 119.93738 * 2 1 4 4 C 1.40939 * 119.87779 * 179.97438 * 3 2 1 5 5 C 1.41001 * 120.10858 * 179.97438 * 4 3 2 6 6 H 1.07995 * 120.00099 * 24.70515 * 5 4 3 7 7 C 1.39923 * 119.99782 * 204.70533 * 5 4 3 8 8 N 1.30848 * 119.99909 * 17.99877 * 7 5 4 9 9 Si 1.86803 * 119.99788 * 198.00461 * 7 5 4 10 10 H 1.48493 * 109.47155 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47296 * 119.99858 * 9 7 5 12 12 H 1.48500 * 109.47007 * 239.99771 * 9 7 5 13 13 C 1.40963 * 119.78002 * 359.97438 * 4 3 2 14 14 C 1.36184 * 119.87937 * 359.74240 * 13 4 3 15 15 C 1.39984 * 119.94302 * 179.97438 * 2 1 3 16 16 C 1.47886 * 119.88689 * 0.02562 * 15 2 1 17 17 C 1.41643 * 119.98238 * 309.99937 * 16 15 2 18 18 C 1.35691 * 119.62556 * 179.97438 * 17 16 15 19 19 C 1.41032 * 119.43957 * 0.28029 * 18 17 16 20 20 N 1.32255 * 133.23764 * 180.47859 * 19 18 17 21 21 N 1.28651 * 109.54531 * 179.46538 * 20 19 18 22 22 C 1.30785 * 110.31399 * 359.72570 * 21 20 19 23 23 N 1.36225 * 107.45169 * 0.02562 * 22 21 20 24 24 C 1.36071 * 133.51687 * 180.02562 * 23 22 21 25 25 H 1.08996 * 109.47798 * 270.02611 * 1 2 3 26 26 H 1.09003 * 109.47064 * 30.02810 * 1 2 3 27 27 H 1.09007 * 109.47188 * 150.02323 * 1 2 3 28 28 H 1.07996 * 120.06352 * 359.94785 * 3 2 1 29 29 H 0.97008 * 119.99484 * 180.02562 * 8 7 5 30 30 H 1.08001 * 120.06322 * 180.02562 * 13 4 3 31 31 H 1.08004 * 119.94412 * 180.27389 * 14 13 4 32 32 H 1.07995 * 120.19432 * 359.97438 * 17 16 15 33 33 H 1.08002 * 120.28289 * 179.97438 * 18 17 16 34 34 H 1.07996 * 126.27904 * 180.02562 * 22 21 20 35 35 H 1.07997 * 119.82453 * 359.95103 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1868 1.1804 0.0000 4 6 3.5961 1.1790 0.0005 5 6 4.3047 2.3980 0.0000 6 1 3.8414 3.2921 0.3901 7 6 5.6083 2.4492 -0.5060 8 7 6.0456 1.4934 -1.2853 9 14 6.7242 3.8821 -0.0688 10 1 5.9965 4.8229 0.8203 11 1 7.9318 3.3738 0.6300 12 1 7.1312 4.5891 -1.3097 13 6 4.2950 -0.0452 0.0016 14 6 3.6059 -1.2198 0.0075 15 6 2.2057 -1.2130 0.0005 16 6 1.4624 -2.4915 0.0005 17 6 0.4246 -2.7069 0.9400 18 6 -0.2530 -3.8825 0.9332 19 6 0.0913 -4.8756 -0.0071 20 7 -0.3780 -6.0861 -0.2593 21 7 0.2728 -6.6041 -1.2408 22 6 1.1806 -5.7688 -1.6749 23 7 1.0976 -4.6428 -0.9126 24 6 1.7772 -3.4640 -0.9056 25 1 -0.3634 0.0005 1.0276 26 1 -0.3633 0.8898 -0.5143 27 1 -0.3634 -0.8902 -0.5135 28 1 1.6468 2.1157 -0.0009 29 1 6.9494 1.5288 -1.6358 30 1 5.3750 -0.0517 0.0025 31 1 4.1403 -2.1584 0.0128 32 1 0.1738 -1.9399 1.6578 33 1 -1.0460 -4.0582 1.6451 34 1 1.8698 -5.9401 -2.4885 35 1 2.5689 -3.2961 -1.6206 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245660371.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:58 Heat of formation + Delta-G solvation = 114.886972 kcal Electronic energy + Delta-G solvation = -20191.086541 eV Core-core repulsion = 17154.907170 eV Total energy + Delta-G solvation = -3036.179371 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.22025 -38.86031 -37.21811 -34.42982 -33.67263 -31.75394 -31.51374 -29.59084 -28.76423 -26.10949 -25.62225 -23.72024 -22.82224 -22.20273 -20.73031 -20.20678 -17.84600 -17.16161 -16.99669 -16.21719 -15.78887 -15.49408 -14.66100 -14.56579 -14.06029 -13.96606 -13.48556 -12.89664 -12.66470 -12.28393 -12.13791 -11.92955 -11.80263 -11.73093 -11.43232 -11.23660 -11.12772 -11.00689 -10.74460 -10.54963 -10.39170 -9.97692 -9.71690 -9.51788 -9.06108 -8.00287 -7.69366 -7.35884 -7.07477 -4.62466 0.85300 1.30335 2.41885 2.62660 2.84029 2.88550 2.92119 2.96649 3.04518 3.60856 3.70749 4.27077 4.35317 4.71590 4.79455 5.04381 5.12101 5.21463 5.38792 5.72086 5.76251 5.84717 5.91603 6.09158 6.12293 6.18224 6.25914 6.34157 6.39519 6.61785 6.71066 6.78451 6.97643 7.07759 7.12981 7.35669 7.62061 7.78550 7.82405 7.99023 8.34037 8.57846 8.67621 8.71585 9.84892 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.034909 B = 0.003899 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.882951 B = 7178.804946 C = 7754.231057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.028 4.028 3 C -0.226 4.226 4 C 0.122 3.878 5 C -0.445 4.445 6 H 0.083 0.917 7 C 0.074 3.926 8 N -0.776 5.776 9 Si 0.911 3.089 10 H -0.258 1.258 11 H -0.269 1.269 12 H -0.272 1.272 13 C -0.173 4.173 14 C -0.071 4.071 15 C -0.212 4.212 16 C 0.009 3.991 17 C -0.067 4.067 18 C -0.098 4.098 19 C 0.188 3.812 20 N -0.307 5.307 21 N -0.263 5.263 22 C 0.100 3.900 23 N -0.376 5.376 24 C 0.019 3.981 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.096 0.904 29 H 0.285 0.715 30 H 0.119 0.881 31 H 0.089 0.911 32 H 0.146 0.854 33 H 0.151 0.849 34 H 0.221 0.779 35 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.598 -2.784 1.303 4.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.028 4.028 3 C -0.246 4.246 4 C 0.119 3.881 5 C -0.472 4.472 6 H 0.102 0.898 7 C -0.146 4.146 8 N -0.400 5.400 9 Si 0.735 3.265 10 H -0.181 1.181 11 H -0.194 1.194 12 H -0.197 1.197 13 C -0.192 4.192 14 C -0.090 4.090 15 C -0.214 4.214 16 C 0.006 3.994 17 C -0.092 4.092 18 C -0.119 4.119 19 C -0.062 4.062 20 N -0.155 5.155 21 N -0.103 5.103 22 C -0.182 4.182 23 N -0.053 5.053 24 C -0.103 4.103 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.115 0.885 29 H 0.096 0.904 30 H 0.137 0.863 31 H 0.107 0.893 32 H 0.164 0.836 33 H 0.169 0.831 34 H 0.237 0.763 35 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -4.229 -4.272 1.147 6.120 hybrid contribution 1.591 1.744 -0.197 2.369 sum -2.638 -2.527 0.950 3.775 Atomic orbital electron populations 1.20850 0.93674 1.01373 1.00912 1.19029 0.93477 0.92534 0.97754 1.20532 0.94157 0.95473 1.14390 1.17720 0.90974 0.93240 0.86130 1.19744 0.97479 0.96239 1.33777 0.89849 1.26029 0.98564 0.97560 0.92478 1.69834 1.17985 1.31517 1.20649 0.86198 0.79802 0.80975 0.79544 1.18113 1.19410 1.19709 1.20961 0.99799 0.91329 1.07111 1.20420 0.92128 0.97111 0.99293 1.17515 0.92241 0.88476 1.23171 1.18543 0.94708 0.93723 0.92407 1.21568 0.93817 0.96280 0.97497 1.20133 1.02385 0.91098 0.98333 1.22381 0.91730 0.96481 0.95568 1.74824 1.23303 1.04670 1.12674 1.74070 1.04859 1.24749 1.06664 1.26339 1.05643 0.83424 1.02776 1.43714 1.24935 1.13042 1.23648 1.21844 1.00928 0.84065 1.03418 0.92211 0.92504 0.92730 0.88537 0.90388 0.86302 0.89263 0.83623 0.83106 0.76307 0.81561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.71 8.43 36.00 0.30 -1.40 16 2 C -0.03 -0.53 5.84 -104.70 -0.61 -1.14 16 3 C -0.23 -4.88 9.36 -39.29 -0.37 -5.25 16 4 C 0.12 2.90 5.57 -106.80 -0.60 2.31 16 5 C -0.44 -10.57 9.03 -37.90 -0.34 -10.91 16 6 H 0.08 1.90 7.91 -52.49 -0.42 1.49 16 7 C 0.07 1.67 5.13 -17.34 -0.09 1.58 16 8 N -0.78 -18.05 10.96 55.55 0.61 -17.44 16 9 Si 0.91 16.79 29.60 -169.99 -5.03 11.76 16 10 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 11 H -0.27 -4.91 7.11 56.52 0.40 -4.50 16 12 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 13 C -0.17 -3.98 8.63 -39.29 -0.34 -4.32 16 14 C -0.07 -1.45 9.39 -39.65 -0.37 -1.82 16 15 C -0.21 -4.01 5.49 -104.62 -0.57 -4.58 16 16 C 0.01 0.15 4.67 -105.24 -0.49 -0.34 16 17 C -0.07 -0.94 7.89 -39.19 -0.31 -1.25 16 18 C -0.10 -1.36 10.09 -39.43 -0.40 -1.76 16 19 C 0.19 3.09 7.91 -155.99 -1.23 1.86 16 20 N -0.31 -5.57 12.30 31.18 0.38 -5.19 16 21 N -0.26 -4.54 12.18 29.87 0.36 -4.18 16 22 C 0.10 1.45 12.97 -89.05 -1.16 0.29 16 23 N -0.38 -5.84 2.94 -63.55 -0.19 -6.03 16 24 C 0.02 0.29 10.42 -16.27 -0.17 0.13 16 25 H 0.06 0.80 7.47 -51.93 -0.39 0.41 16 26 H 0.06 0.83 8.08 -51.93 -0.42 0.41 16 27 H 0.05 0.81 6.44 -51.92 -0.33 0.47 16 28 H 0.10 1.98 8.06 -52.49 -0.42 1.55 16 29 H 0.29 5.98 8.30 -40.82 -0.34 5.64 16 30 H 0.12 2.85 6.16 -52.49 -0.32 2.53 16 31 H 0.09 1.65 8.02 -52.48 -0.42 1.23 16 32 H 0.15 1.81 6.85 -52.49 -0.36 1.45 16 33 H 0.15 1.67 8.06 -52.49 -0.42 1.25 16 34 H 0.22 2.14 8.06 -52.49 -0.42 1.71 16 35 H 0.17 2.31 7.99 -52.49 -0.42 1.89 16 LS Contribution 301.50 15.07 4.54 4.54 Total: -1.00 -26.95 301.50 -9.54 -36.50 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -3.48 Total: 6.65 kcal Atomic # 6 Polarization: -19.87 SS G_CDS: -6.74 Total: -26.62 kcal Atomic # 7 Polarization: -34.00 SS G_CDS: 1.17 Total: -32.83 kcal Atomic # 14 Polarization: 16.79 SS G_CDS: -5.03 Total: 11.76 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -26.95 -9.54 -36.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245660371.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.384 kcal (2) G-P(sol) polarization free energy of solvation -26.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds