Wall clock time and date at job start Wed Apr 15 2020 11:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36219 * 119.93738 * 2 1 4 4 C 1.40939 * 119.87779 * 179.97438 * 3 2 1 5 5 C 1.41001 * 120.10858 * 179.97438 * 4 3 2 6 6 H 1.07995 * 120.00099 * 24.70515 * 5 4 3 7 7 C 1.39923 * 119.99782 * 204.70533 * 5 4 3 8 8 N 1.30848 * 119.99909 * 17.99877 * 7 5 4 9 9 Si 1.86803 * 119.99788 * 198.00461 * 7 5 4 10 10 H 1.48493 * 109.47155 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47296 * 119.99858 * 9 7 5 12 12 H 1.48500 * 109.47007 * 239.99771 * 9 7 5 13 13 C 1.40963 * 119.78002 * 359.97438 * 4 3 2 14 14 C 1.36184 * 119.87937 * 359.74240 * 13 4 3 15 15 C 1.39984 * 119.94302 * 179.97438 * 2 1 3 16 16 C 1.47886 * 119.88689 * 0.02562 * 15 2 1 17 17 C 1.41643 * 119.98238 * 309.99937 * 16 15 2 18 18 C 1.35691 * 119.62556 * 179.97438 * 17 16 15 19 19 C 1.41032 * 119.43957 * 0.28029 * 18 17 16 20 20 N 1.32255 * 133.23764 * 180.47859 * 19 18 17 21 21 N 1.28651 * 109.54531 * 179.46538 * 20 19 18 22 22 C 1.30785 * 110.31399 * 359.72570 * 21 20 19 23 23 N 1.36225 * 107.45169 * 0.02562 * 22 21 20 24 24 C 1.36071 * 133.51687 * 180.02562 * 23 22 21 25 25 H 1.08996 * 109.47798 * 270.02611 * 1 2 3 26 26 H 1.09003 * 109.47064 * 30.02810 * 1 2 3 27 27 H 1.09007 * 109.47188 * 150.02323 * 1 2 3 28 28 H 1.07996 * 120.06352 * 359.94785 * 3 2 1 29 29 H 0.97008 * 119.99484 * 180.02562 * 8 7 5 30 30 H 1.08001 * 120.06322 * 180.02562 * 13 4 3 31 31 H 1.08004 * 119.94412 * 180.27389 * 14 13 4 32 32 H 1.07995 * 120.19432 * 359.97438 * 17 16 15 33 33 H 1.08002 * 120.28289 * 179.97438 * 18 17 16 34 34 H 1.07996 * 126.27904 * 180.02562 * 22 21 20 35 35 H 1.07997 * 119.82453 * 359.95103 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1868 1.1804 0.0000 4 6 3.5961 1.1790 0.0005 5 6 4.3047 2.3980 0.0000 6 1 3.8414 3.2921 0.3901 7 6 5.6083 2.4492 -0.5060 8 7 6.0456 1.4934 -1.2853 9 14 6.7242 3.8821 -0.0688 10 1 5.9965 4.8229 0.8203 11 1 7.9318 3.3738 0.6300 12 1 7.1312 4.5891 -1.3097 13 6 4.2950 -0.0452 0.0016 14 6 3.6059 -1.2198 0.0075 15 6 2.2057 -1.2130 0.0005 16 6 1.4624 -2.4915 0.0005 17 6 0.4246 -2.7069 0.9400 18 6 -0.2530 -3.8825 0.9332 19 6 0.0913 -4.8756 -0.0071 20 7 -0.3780 -6.0861 -0.2593 21 7 0.2728 -6.6041 -1.2408 22 6 1.1806 -5.7688 -1.6749 23 7 1.0976 -4.6428 -0.9126 24 6 1.7772 -3.4640 -0.9056 25 1 -0.3634 0.0005 1.0276 26 1 -0.3633 0.8898 -0.5143 27 1 -0.3634 -0.8902 -0.5135 28 1 1.6468 2.1157 -0.0009 29 1 6.9494 1.5288 -1.6358 30 1 5.3750 -0.0517 0.0025 31 1 4.1403 -2.1584 0.0128 32 1 0.1738 -1.9399 1.6578 33 1 -1.0460 -4.0582 1.6451 34 1 1.8698 -5.9401 -2.4885 35 1 2.5689 -3.2961 -1.6206 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245660371.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:55 Heat of formation + Delta-G solvation = 104.873956 kcal Electronic energy + Delta-G solvation = -20191.520738 eV Core-core repulsion = 17154.907170 eV Total energy + Delta-G solvation = -3036.613568 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.43648 -40.29086 -38.61824 -35.97635 -34.91371 -33.20210 -32.98605 -30.96506 -30.11096 -27.60358 -27.08980 -24.97536 -24.13109 -23.40454 -22.28933 -21.76336 -19.11892 -18.78565 -18.18418 -17.45443 -17.21606 -16.97575 -15.88610 -15.76613 -15.53592 -15.45229 -14.80488 -14.28693 -14.11551 -13.73461 -13.50471 -13.27115 -13.18184 -13.11159 -12.79272 -12.67701 -12.56509 -12.27112 -12.11197 -12.04613 -11.62777 -11.51521 -11.32019 -11.09865 -10.43348 -9.41347 -9.22441 -8.84883 -8.70626 -6.35941 -0.31719 0.08917 0.90906 1.18579 1.38935 1.41575 1.49637 1.53544 1.75649 2.18087 2.37762 2.70359 3.16055 3.50192 3.67277 3.76396 3.93752 3.99324 4.04366 4.35177 4.38270 4.59895 4.69253 4.76632 4.93295 4.98188 5.05243 5.06449 5.12107 5.15482 5.19773 5.36806 5.42704 5.49890 5.72687 5.89141 6.04696 6.11164 6.18526 6.34880 6.66061 6.88724 7.00058 7.49075 8.24126 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.034909 B = 0.003899 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.882951 B = 7178.804946 C = 7754.231057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.031 4.031 3 C -0.243 4.243 4 C 0.093 3.907 5 C -0.487 4.487 6 H 0.079 0.921 7 C 0.038 3.962 8 N -0.812 5.812 9 Si 0.979 3.021 10 H -0.257 1.257 11 H -0.265 1.265 12 H -0.266 1.266 13 C -0.197 4.197 14 C -0.075 4.075 15 C -0.194 4.194 16 C -0.008 4.008 17 C -0.061 4.061 18 C -0.093 4.093 19 C 0.177 3.823 20 N -0.339 5.339 21 N -0.295 5.295 22 C 0.118 3.882 23 N -0.384 5.384 24 C 0.034 3.966 25 H 0.085 0.915 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.099 0.901 29 H 0.291 0.709 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.166 0.834 33 H 0.180 0.820 34 H 0.263 0.737 35 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.648 -3.554 1.502 6.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.031 4.031 3 C -0.263 4.263 4 C 0.090 3.910 5 C -0.515 4.515 6 H 0.097 0.903 7 C -0.179 4.179 8 N -0.437 5.437 9 Si 0.800 3.200 10 H -0.181 1.181 11 H -0.189 1.189 12 H -0.191 1.191 13 C -0.217 4.217 14 C -0.093 4.093 15 C -0.196 4.196 16 C -0.011 4.011 17 C -0.085 4.085 18 C -0.113 4.113 19 C -0.073 4.073 20 N -0.185 5.185 21 N -0.133 5.133 22 C -0.165 4.165 23 N -0.062 5.062 24 C -0.088 4.088 25 H 0.104 0.896 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.117 0.883 29 H 0.101 0.899 30 H 0.118 0.882 31 H 0.125 0.875 32 H 0.184 0.816 33 H 0.197 0.803 34 H 0.278 0.722 35 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -5.311 -5.076 1.350 7.469 hybrid contribution 1.760 1.731 -0.302 2.487 sum -3.551 -3.344 1.047 4.989 Atomic orbital electron populations 1.20868 0.90485 1.02126 1.02798 1.19449 0.95841 0.91690 0.96099 1.20711 0.93625 0.96758 1.15172 1.18040 0.92231 0.93623 0.87109 1.19925 0.99033 0.96410 1.36176 0.90331 1.26748 0.99336 0.99958 0.91826 1.69875 1.18626 1.33369 1.21844 0.85196 0.77766 0.77830 0.79248 1.18076 1.18930 1.19121 1.20900 0.99156 0.92348 1.09260 1.20642 0.93172 0.96893 0.98587 1.17735 0.91766 0.89873 1.20217 1.18411 0.95861 0.92781 0.94045 1.21651 0.92828 0.96852 0.97177 1.20445 1.02777 0.90091 0.98035 1.22838 0.91786 0.96537 0.96088 1.74761 1.24451 1.05688 1.13616 1.74018 1.06108 1.25910 1.07298 1.27220 1.04703 0.82192 1.02389 1.43845 1.25066 1.13347 1.23970 1.21967 1.00243 0.83536 1.03007 0.89629 0.91937 0.91786 0.88326 0.89865 0.88220 0.87540 0.81647 0.80286 0.72166 0.80259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.92 8.43 71.23 0.60 -2.32 16 2 C -0.03 -1.13 5.84 -19.91 -0.12 -1.24 16 3 C -0.24 -10.60 9.36 22.46 0.21 -10.39 16 4 C 0.09 4.55 5.57 -21.27 -0.12 4.44 16 5 C -0.49 -24.26 9.03 23.36 0.21 -24.05 16 6 H 0.08 3.79 7.91 -2.91 -0.02 3.76 16 7 C 0.04 1.78 5.13 85.25 0.44 2.21 16 8 N -0.81 -39.32 10.96 21.82 0.24 -39.08 16 9 Si 0.98 35.35 29.60 68.60 2.03 37.38 16 10 H -0.26 -9.13 7.11 99.48 0.71 -8.42 16 11 H -0.26 -9.24 7.11 99.48 0.71 -8.54 16 12 H -0.27 -9.27 7.11 99.48 0.71 -8.56 16 13 C -0.20 -9.38 8.63 22.46 0.19 -9.19 16 14 C -0.07 -3.01 9.39 22.22 0.21 -2.80 16 15 C -0.19 -6.99 5.49 -19.87 -0.11 -7.10 16 16 C -0.01 -0.22 4.67 -20.27 -0.09 -0.32 16 17 C -0.06 -1.48 7.89 22.52 0.18 -1.30 16 18 C -0.09 -2.23 10.09 22.36 0.23 -2.01 16 19 C 0.18 5.36 7.91 134.13 1.06 6.42 16 20 N -0.34 -11.64 12.30 -55.26 -0.68 -12.32 16 21 N -0.29 -9.58 12.18 -59.39 -0.72 -10.31 16 22 C 0.12 3.04 12.97 179.80 2.33 5.37 16 23 N -0.38 -10.75 2.94 -354.98 -1.05 -11.80 16 24 C 0.03 0.94 10.42 83.65 0.87 1.81 16 25 H 0.09 1.94 7.47 -2.39 -0.02 1.92 16 26 H 0.06 1.66 8.08 -2.39 -0.02 1.64 16 27 H 0.06 1.65 6.44 -2.38 -0.02 1.64 16 28 H 0.10 4.11 8.06 -2.91 -0.02 4.09 16 29 H 0.29 12.64 8.30 -92.70 -0.77 11.88 16 30 H 0.10 5.04 6.16 -2.91 -0.02 5.02 16 31 H 0.11 3.82 8.02 -2.91 -0.02 3.80 16 32 H 0.17 3.37 6.85 -2.91 -0.02 3.35 16 33 H 0.18 3.23 8.06 -2.91 -0.02 3.20 16 34 H 0.26 4.01 8.06 -2.91 -0.02 3.98 16 35 H 0.18 4.41 7.99 -2.91 -0.02 4.38 16 Total: -1.00 -60.48 301.50 7.03 -53.45 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: 1.12 Total: 23.16 kcal Atomic # 6 Polarization: -46.57 SS G_CDS: 6.09 Total: -40.48 kcal Atomic # 7 Polarization: -71.30 SS G_CDS: -2.21 Total: -73.51 kcal Atomic # 14 Polarization: 35.35 SS G_CDS: 2.03 Total: 37.38 kcal Total: -60.48 7.03 -53.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245660371.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.321 kcal (2) G-P(sol) polarization free energy of solvation -60.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds