Wall clock time and date at job start Wed Apr 15 2020 11:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36224 * 120.06128 * 2 1 4 4 C 1.39981 * 120.11961 * 179.97438 * 3 2 1 5 5 C 1.47885 * 119.88802 * 180.02562 * 4 3 2 6 6 C 1.41647 * 119.98260 * 359.74687 * 5 4 3 7 7 C 1.35694 * 119.62831 * 179.71754 * 6 5 4 8 8 C 1.41024 * 119.43455 * 0.53444 * 7 6 5 9 9 N 1.32261 * 133.24039 * 179.76108 * 8 7 6 10 10 N 1.28652 * 109.54834 * 179.97438 * 9 8 7 11 11 C 1.30784 * 110.30920 * 0.02562 * 10 9 8 12 12 N 1.36219 * 107.45649 * 359.97438 * 11 10 9 13 13 C 1.36069 * 133.51586 * 180.02562 * 12 11 10 14 14 C 1.40025 * 120.22486 * 0.04698 * 4 3 2 15 15 C 1.36185 * 120.11860 * 0.02562 * 14 4 3 16 16 C 1.40936 * 120.06007 * 180.02562 * 2 1 3 17 17 C 1.40996 * 120.11032 * 0.24981 * 16 2 1 18 18 H 1.07994 * 119.99880 * 329.31875 * 17 16 2 19 19 C 1.39922 * 119.99549 * 149.31740 * 17 16 2 20 20 N 1.30861 * 119.99453 * 162.15283 * 19 17 16 21 21 Si 1.86792 * 120.00439 * 342.15170 * 19 17 16 22 22 H 1.48500 * 109.47205 * 95.39143 * 21 19 17 23 23 H 1.48500 * 109.47414 * 215.39105 * 21 19 17 24 24 H 1.48500 * 109.47290 * 335.39504 * 21 19 17 25 25 H 1.08999 * 109.46772 * 269.93269 * 1 2 3 26 26 H 1.08995 * 109.46877 * 29.93120 * 1 2 3 27 27 H 1.08998 * 109.46947 * 149.93392 * 1 2 3 28 28 H 1.07999 * 119.93813 * 0.02599 * 3 2 1 29 29 H 1.08005 * 120.18717 * 359.97438 * 6 5 4 30 30 H 1.07991 * 120.28365 * 180.24571 * 7 6 5 31 31 H 1.07998 * 126.27012 * 179.97438 * 11 10 9 32 32 H 1.08000 * 119.83167 * 359.97438 * 13 12 11 33 33 H 1.07998 * 119.93972 * 179.97438 * 14 4 3 34 34 H 1.08003 * 120.05815 * 179.97438 * 15 14 4 35 35 H 0.97000 * 119.99418 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1893 1.1790 0.0000 4 6 3.5892 1.1804 0.0005 5 6 4.3248 2.4633 0.0011 6 6 3.6125 3.6877 -0.0043 7 6 4.2947 4.8607 0.0021 8 6 5.7049 4.8423 0.0026 9 7 6.6234 5.7939 0.0039 10 7 7.7947 5.2616 0.0043 11 6 7.7005 3.9571 0.0027 12 7 6.3749 3.6432 0.0018 13 6 5.6907 2.4670 0.0006 14 6 4.2953 -0.0287 0.0001 15 6 3.6226 -1.2129 -0.0014 16 6 2.2129 -1.2198 -0.0005 17 6 1.5116 -2.4429 -0.0064 18 1 0.5434 -2.5125 0.4670 19 6 2.0701 -3.5666 -0.6256 20 7 1.6157 -4.7614 -0.3457 21 14 3.4641 -3.3611 -1.8518 22 1 4.7643 -3.5469 -1.1589 23 1 3.3286 -4.3736 -2.9297 24 1 3.4078 -1.9995 -2.4418 25 1 -0.3633 -0.0012 1.0277 26 1 -0.3633 0.8906 -0.5127 27 1 -0.3633 -0.8894 -0.5149 28 1 1.6493 2.1143 0.0004 29 1 2.5325 3.6877 -0.0093 30 1 3.7624 5.8003 0.0020 31 1 8.5229 3.2572 0.0023 32 1 6.2304 1.5315 -0.0002 33 1 5.3752 -0.0223 0.0001 34 1 4.1682 -2.1450 -0.0022 35 1 2.0026 -5.5403 -0.7752 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245661326.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:03 Heat of formation + Delta-G solvation = 117.397671 kcal Electronic energy + Delta-G solvation = -20165.921595 eV Core-core repulsion = 17129.851096 eV Total energy + Delta-G solvation = -3036.070499 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.24252 -38.98859 -37.49746 -34.24722 -33.74376 -32.60467 -31.40926 -29.76448 -28.99210 -26.83113 -25.12264 -23.79502 -22.97394 -22.24496 -21.39381 -19.79972 -18.07224 -17.64146 -16.95526 -16.23859 -15.98752 -15.54273 -14.79876 -14.65647 -14.30820 -13.89459 -13.41289 -13.12430 -12.93558 -12.46831 -12.42932 -12.08492 -11.88124 -11.73192 -11.39728 -11.27818 -11.23304 -11.07693 -10.87825 -10.49594 -10.41574 -10.12659 -9.84158 -9.54486 -9.26351 -8.17352 -7.95394 -7.39267 -7.33675 -4.78633 0.73961 1.17408 2.27895 2.46288 2.58554 2.84889 2.95542 3.02405 3.09112 3.56818 3.69435 4.24208 4.26181 4.64671 4.71322 4.96012 5.05058 5.07736 5.12197 5.55866 5.65269 5.82430 5.84266 5.98738 6.03260 6.17711 6.21924 6.28296 6.39695 6.49514 6.50192 6.64105 6.70248 6.80881 7.07080 7.18455 7.34917 7.43272 7.56732 7.77505 7.96592 8.29715 8.40686 8.68999 9.64971 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.028289 B = 0.004418 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.549643 B = 6336.730091 C = 7146.932582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.181 4.181 3 C -0.049 4.049 4 C -0.206 4.206 5 C 0.013 3.987 6 C -0.079 4.079 7 C -0.087 4.087 8 C 0.180 3.820 9 N -0.304 5.304 10 N -0.264 5.264 11 C 0.098 3.902 12 N -0.368 5.368 13 C -0.011 4.011 14 C -0.050 4.050 15 C -0.238 4.238 16 C 0.100 3.900 17 C -0.414 4.414 18 H 0.100 0.900 19 C 0.080 3.920 20 N -0.784 5.784 21 Si 0.915 3.085 22 H -0.267 1.267 23 H -0.287 1.287 24 H -0.241 1.241 25 H 0.048 0.952 26 H 0.043 0.957 27 H 0.066 0.934 28 H 0.101 0.899 29 H 0.147 0.853 30 H 0.152 0.848 31 H 0.220 0.780 32 H 0.166 0.834 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.638 6.384 -0.850 6.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.182 4.182 3 C -0.067 4.067 4 C -0.208 4.208 5 C 0.010 3.990 6 C -0.104 4.104 7 C -0.108 4.108 8 C -0.069 4.069 9 N -0.152 5.152 10 N -0.104 5.104 11 C -0.184 4.184 12 N -0.046 5.046 13 C -0.133 4.133 14 C -0.069 4.069 15 C -0.257 4.257 16 C 0.097 3.903 17 C -0.441 4.441 18 H 0.118 0.882 19 C -0.143 4.143 20 N -0.405 5.405 21 Si 0.740 3.260 22 H -0.193 1.193 23 H -0.214 1.214 24 H -0.163 1.163 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.085 0.915 28 H 0.119 0.881 29 H 0.165 0.835 30 H 0.170 0.830 31 H 0.236 0.764 32 H 0.183 0.817 33 H 0.114 0.886 34 H 0.122 0.878 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.375 7.492 -0.853 8.261 hybrid contribution 0.209 -1.652 -0.435 1.721 sum 3.584 5.840 -1.288 6.972 Atomic orbital electron populations 1.20480 0.92581 1.01264 1.00463 1.19435 0.94994 0.92444 1.11283 1.20303 0.92373 0.96584 0.97448 1.17642 0.92527 0.89159 1.21484 1.18477 0.90489 0.94334 0.95741 1.21400 1.01274 0.90701 0.96992 1.20124 0.87822 1.00060 1.02795 1.22350 0.95884 0.82138 1.06547 1.74815 0.93801 1.23578 1.23053 1.74069 1.16752 1.04725 1.14888 1.26299 0.84446 0.95632 1.12030 1.43586 1.07810 1.08021 1.45148 1.21484 0.92771 0.87490 1.11544 1.20369 0.97321 0.92225 0.96949 1.20694 0.94591 0.96506 1.13918 1.17712 0.91322 0.92815 0.88487 1.19704 1.05141 0.91365 1.27854 0.88227 1.26359 0.97103 0.94138 0.96675 1.69693 1.37356 0.99551 1.33929 0.86228 0.79890 0.80315 0.79550 1.19282 1.21383 1.16349 0.93319 0.93755 0.91504 0.88092 0.83539 0.83010 0.76375 0.81704 0.88616 0.87822 0.89732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.57 9.40 36.00 0.34 -1.23 16 2 C -0.18 -3.57 5.90 -104.33 -0.62 -4.19 16 3 C -0.05 -0.87 9.00 -39.65 -0.36 -1.23 16 4 C -0.21 -3.66 5.90 -104.63 -0.62 -4.28 16 5 C 0.01 0.20 5.84 -105.24 -0.62 -0.42 16 6 C -0.08 -1.07 9.42 -39.19 -0.37 -1.44 16 7 C -0.09 -1.17 10.09 -39.44 -0.40 -1.57 16 8 C 0.18 2.92 7.91 -155.99 -1.23 1.69 16 9 N -0.30 -5.46 12.30 31.18 0.38 -5.08 16 10 N -0.26 -4.49 12.19 29.87 0.36 -4.13 16 11 C 0.10 1.39 12.97 -89.06 -1.16 0.23 16 12 N -0.37 -5.62 2.94 -63.55 -0.19 -5.81 16 13 C -0.01 -0.16 10.39 -16.27 -0.17 -0.33 16 14 C -0.05 -0.93 9.34 -39.65 -0.37 -1.31 16 15 C -0.24 -4.99 7.08 -39.29 -0.28 -5.26 16 16 C 0.10 2.20 5.09 -106.80 -0.54 1.66 16 17 C -0.41 -9.70 8.50 -37.91 -0.32 -10.02 16 18 H 0.10 2.42 7.22 -52.49 -0.38 2.04 16 19 C 0.08 1.84 5.40 -17.34 -0.09 1.74 16 20 N -0.78 -18.47 13.93 55.55 0.77 -17.69 16 21 Si 0.91 18.42 24.51 -169.99 -4.17 14.26 16 22 H -0.27 -5.21 6.71 56.52 0.38 -4.83 16 23 H -0.29 -5.62 7.11 56.52 0.40 -5.22 16 24 H -0.24 -5.00 6.86 56.52 0.39 -4.61 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.04 0.65 8.08 -51.93 -0.42 0.23 16 27 H 0.07 1.21 6.85 -51.93 -0.36 0.85 16 28 H 0.10 1.50 6.17 -52.49 -0.32 1.18 16 29 H 0.15 1.65 6.21 -52.48 -0.33 1.32 16 30 H 0.15 1.61 8.06 -52.49 -0.42 1.19 16 31 H 0.22 2.05 8.06 -52.49 -0.42 1.63 16 32 H 0.17 2.10 6.08 -52.49 -0.32 1.78 16 33 H 0.10 1.51 6.14 -52.49 -0.32 1.18 16 34 H 0.10 2.17 4.78 -52.48 -0.25 1.91 16 35 H 0.29 6.19 8.30 -40.82 -0.34 5.85 16 LS Contribution 292.89 15.07 4.41 4.41 Total: -1.00 -26.74 292.89 -8.35 -35.09 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -3.14 Total: 4.89 kcal Atomic # 6 Polarization: -19.14 SS G_CDS: -6.80 Total: -25.94 kcal Atomic # 7 Polarization: -34.04 SS G_CDS: 1.33 Total: -32.71 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -4.17 Total: 14.26 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -26.74 -8.35 -35.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245661326.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.490 kcal (2) G-P(sol) polarization free energy of solvation -26.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds