Wall clock time and date at job start Wed Apr 15 2020 11:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36224 * 120.06128 * 2 1 4 4 C 1.39981 * 120.11961 * 179.97438 * 3 2 1 5 5 C 1.47885 * 119.88802 * 180.02562 * 4 3 2 6 6 C 1.41647 * 119.98260 * 359.74687 * 5 4 3 7 7 C 1.35694 * 119.62831 * 179.71754 * 6 5 4 8 8 C 1.41024 * 119.43455 * 0.53444 * 7 6 5 9 9 N 1.32261 * 133.24039 * 179.76108 * 8 7 6 10 10 N 1.28652 * 109.54834 * 179.97438 * 9 8 7 11 11 C 1.30784 * 110.30920 * 0.02562 * 10 9 8 12 12 N 1.36219 * 107.45649 * 359.97438 * 11 10 9 13 13 C 1.36069 * 133.51586 * 180.02562 * 12 11 10 14 14 C 1.40025 * 120.22486 * 0.04698 * 4 3 2 15 15 C 1.36185 * 120.11860 * 0.02562 * 14 4 3 16 16 C 1.40936 * 120.06007 * 180.02562 * 2 1 3 17 17 C 1.40996 * 120.11032 * 0.24981 * 16 2 1 18 18 H 1.07994 * 119.99880 * 329.31875 * 17 16 2 19 19 C 1.39922 * 119.99549 * 149.31740 * 17 16 2 20 20 N 1.30861 * 119.99453 * 162.15283 * 19 17 16 21 21 Si 1.86792 * 120.00439 * 342.15170 * 19 17 16 22 22 H 1.48500 * 109.47205 * 95.39143 * 21 19 17 23 23 H 1.48500 * 109.47414 * 215.39105 * 21 19 17 24 24 H 1.48500 * 109.47290 * 335.39504 * 21 19 17 25 25 H 1.08999 * 109.46772 * 269.93269 * 1 2 3 26 26 H 1.08995 * 109.46877 * 29.93120 * 1 2 3 27 27 H 1.08998 * 109.46947 * 149.93392 * 1 2 3 28 28 H 1.07999 * 119.93813 * 0.02599 * 3 2 1 29 29 H 1.08005 * 120.18717 * 359.97438 * 6 5 4 30 30 H 1.07991 * 120.28365 * 180.24571 * 7 6 5 31 31 H 1.07998 * 126.27012 * 179.97438 * 11 10 9 32 32 H 1.08000 * 119.83167 * 359.97438 * 13 12 11 33 33 H 1.07998 * 119.93972 * 179.97438 * 14 4 3 34 34 H 1.08003 * 120.05815 * 179.97438 * 15 14 4 35 35 H 0.97000 * 119.99418 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1893 1.1790 0.0000 4 6 3.5892 1.1804 0.0005 5 6 4.3248 2.4633 0.0011 6 6 3.6125 3.6877 -0.0043 7 6 4.2947 4.8607 0.0021 8 6 5.7049 4.8423 0.0026 9 7 6.6234 5.7939 0.0039 10 7 7.7947 5.2616 0.0043 11 6 7.7005 3.9571 0.0027 12 7 6.3749 3.6432 0.0018 13 6 5.6907 2.4670 0.0006 14 6 4.2953 -0.0287 0.0001 15 6 3.6226 -1.2129 -0.0014 16 6 2.2129 -1.2198 -0.0005 17 6 1.5116 -2.4429 -0.0064 18 1 0.5434 -2.5125 0.4670 19 6 2.0701 -3.5666 -0.6256 20 7 1.6157 -4.7614 -0.3457 21 14 3.4641 -3.3611 -1.8518 22 1 4.7643 -3.5469 -1.1589 23 1 3.3286 -4.3736 -2.9297 24 1 3.4078 -1.9995 -2.4418 25 1 -0.3633 -0.0012 1.0277 26 1 -0.3633 0.8906 -0.5127 27 1 -0.3633 -0.8894 -0.5149 28 1 1.6493 2.1143 0.0004 29 1 2.5325 3.6877 -0.0093 30 1 3.7624 5.8003 0.0020 31 1 8.5229 3.2572 0.0023 32 1 6.2304 1.5315 -0.0002 33 1 5.3752 -0.0223 0.0001 34 1 4.1682 -2.1450 -0.0022 35 1 2.0026 -5.5403 -0.7752 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245661326.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:03 Heat of formation + Delta-G solvation = 105.922924 kcal Electronic energy + Delta-G solvation = -20166.419177 eV Core-core repulsion = 17129.851096 eV Total energy + Delta-G solvation = -3036.568081 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.42952 -40.38360 -38.80367 -35.75257 -34.95396 -34.01203 -32.84849 -31.10328 -30.22239 -28.26974 -26.54661 -24.98097 -24.33235 -23.43211 -22.82167 -21.22218 -19.52952 -18.94082 -18.14638 -17.44051 -17.42921 -16.89092 -16.05547 -15.85222 -15.76099 -15.25651 -14.77471 -14.60630 -14.42506 -13.77834 -13.70910 -13.46449 -13.19167 -13.12342 -12.79480 -12.67104 -12.52969 -12.50312 -12.18241 -11.93022 -11.66100 -11.62784 -11.38458 -11.02493 -10.65221 -9.47098 -9.39458 -8.96866 -8.77172 -6.46116 -0.41773 0.00041 0.85552 0.94073 1.26391 1.40982 1.43475 1.48361 1.76881 2.08308 2.31248 2.74179 3.13610 3.48569 3.51677 3.66848 3.91174 3.94862 3.98564 4.23072 4.30678 4.49056 4.66032 4.73145 4.82693 4.84206 5.02839 5.04882 5.06467 5.08630 5.17385 5.27535 5.32191 5.44072 5.67789 5.77285 5.92578 5.99795 6.01027 6.22603 6.36597 6.70786 6.80217 7.49579 8.09249 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.028289 B = 0.004418 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.549643 B = 6336.730091 C = 7146.932582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.193 4.193 3 C -0.053 4.053 4 C -0.180 4.180 5 C -0.010 4.010 6 C -0.071 4.071 7 C -0.088 4.088 8 C 0.171 3.829 9 N -0.340 5.340 10 N -0.297 5.297 11 C 0.117 3.883 12 N -0.381 5.381 13 C 0.014 3.986 14 C -0.062 4.062 15 C -0.253 4.253 16 C 0.081 3.919 17 C -0.458 4.458 18 H 0.069 0.931 19 C 0.049 3.951 20 N -0.836 5.836 21 Si 0.961 3.039 22 H -0.257 1.257 23 H -0.282 1.282 24 H -0.250 1.250 25 H 0.053 0.947 26 H 0.074 0.926 27 H 0.046 0.954 28 H 0.138 0.862 29 H 0.173 0.827 30 H 0.179 0.821 31 H 0.264 0.736 32 H 0.188 0.812 33 H 0.128 0.872 34 H 0.098 0.902 35 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.393 9.282 -1.181 10.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.194 4.194 3 C -0.071 4.071 4 C -0.182 4.182 5 C -0.014 4.014 6 C -0.095 4.095 7 C -0.109 4.109 8 C -0.079 4.079 9 N -0.186 5.186 10 N -0.136 5.136 11 C -0.166 4.166 12 N -0.059 5.059 13 C -0.108 4.108 14 C -0.080 4.080 15 C -0.272 4.272 16 C 0.078 3.922 17 C -0.486 4.486 18 H 0.087 0.913 19 C -0.168 4.168 20 N -0.461 5.461 21 Si 0.785 3.215 22 H -0.182 1.182 23 H -0.209 1.209 24 H -0.173 1.173 25 H 0.072 0.928 26 H 0.093 0.907 27 H 0.065 0.935 28 H 0.156 0.844 29 H 0.190 0.810 30 H 0.197 0.803 31 H 0.280 0.720 32 H 0.205 0.795 33 H 0.145 0.855 34 H 0.116 0.884 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.149 10.434 -1.179 11.695 hybrid contribution -0.102 -2.055 -0.265 2.074 sum 5.047 8.379 -1.444 9.888 Atomic orbital electron populations 1.20470 0.91346 1.01732 1.00942 1.19820 0.96339 0.92517 1.10731 1.20690 0.92734 0.97309 0.96406 1.17966 0.92817 0.89924 1.17458 1.18453 0.90976 0.94045 0.97892 1.21609 1.02500 0.89647 0.95745 1.20457 0.86757 1.01389 1.02306 1.22846 0.96917 0.82249 1.05868 1.74757 0.94478 1.24740 1.24640 1.74016 1.16866 1.06333 1.16369 1.27222 0.85025 0.95474 1.08831 1.43786 1.08265 1.07944 1.45874 1.21853 0.92861 0.88083 1.07975 1.20719 0.99122 0.91610 0.96542 1.20804 0.94312 0.97454 1.14617 1.17929 0.92146 0.93130 0.88997 1.19565 1.04868 0.93009 1.31193 0.91319 1.26880 0.98654 0.93765 0.97494 1.69732 1.39873 1.00133 1.36371 0.85528 0.78380 0.79504 0.78085 1.18245 1.20877 1.17333 0.92804 0.90722 0.93527 0.84411 0.80967 0.80346 0.72020 0.79495 0.85458 0.88441 0.89372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.99 9.40 71.23 0.67 -2.32 16 2 C -0.19 -7.43 5.90 -19.67 -0.12 -7.55 16 3 C -0.05 -1.72 9.00 22.22 0.20 -1.52 16 4 C -0.18 -5.65 5.90 -19.87 -0.12 -5.77 16 5 C -0.01 -0.27 5.84 -20.27 -0.12 -0.39 16 6 C -0.07 -1.54 9.42 22.52 0.21 -1.33 16 7 C -0.09 -1.99 10.09 22.36 0.23 -1.76 16 8 C 0.17 4.94 7.91 134.12 1.06 6.00 16 9 N -0.34 -11.33 12.30 -55.27 -0.68 -12.01 16 10 N -0.30 -9.31 12.19 -59.40 -0.72 -10.04 16 11 C 0.12 2.82 12.97 179.80 2.33 5.15 16 12 N -0.38 -9.92 2.94 -354.99 -1.04 -10.97 16 13 C 0.01 0.34 10.39 83.65 0.87 1.21 16 14 C -0.06 -2.11 9.34 22.22 0.21 -1.90 16 15 C -0.25 -10.39 7.08 22.46 0.16 -10.23 16 16 C 0.08 3.61 5.09 -21.27 -0.11 3.50 16 17 C -0.46 -22.85 8.50 23.35 0.20 -22.65 16 18 H 0.07 3.68 7.22 -2.91 -0.02 3.66 16 19 C 0.05 2.37 5.40 85.25 0.46 2.83 16 20 N -0.84 -42.21 13.93 21.82 0.30 -41.91 16 21 Si 0.96 38.87 24.51 68.60 1.68 40.55 16 22 H -0.26 -9.78 6.71 99.48 0.67 -9.11 16 23 H -0.28 -10.93 7.11 99.48 0.71 -10.23 16 24 H -0.25 -10.26 6.86 99.48 0.68 -9.58 16 25 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.07 2.02 8.08 -2.39 -0.02 2.00 16 27 H 0.05 1.76 6.85 -2.39 -0.02 1.74 16 28 H 0.14 3.35 6.17 -2.91 -0.02 3.34 16 29 H 0.17 2.82 6.21 -2.91 -0.02 2.80 16 30 H 0.18 2.97 8.06 -2.92 -0.02 2.95 16 31 H 0.26 3.48 8.06 -2.91 -0.02 3.45 16 32 H 0.19 3.64 6.08 -2.91 -0.02 3.62 16 33 H 0.13 3.43 6.14 -2.91 -0.02 3.41 16 34 H 0.10 4.06 4.78 -2.91 -0.01 4.05 16 35 H 0.30 13.43 8.30 -92.71 -0.77 12.66 16 Total: -1.00 -61.37 292.89 6.75 -54.62 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 1.08 Total: 16.47 kcal Atomic # 6 Polarization: -42.86 SS G_CDS: 6.14 Total: -36.72 kcal Atomic # 7 Polarization: -72.77 SS G_CDS: -2.14 Total: -74.92 kcal Atomic # 14 Polarization: 38.87 SS G_CDS: 1.68 Total: 40.55 kcal Total: -61.37 6.75 -54.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245661326.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.542 kcal (2) G-P(sol) polarization free energy of solvation -61.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds