Wall clock time and date at job start Wed Apr 15 2020 11:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35982 * 116.99716 * 2 1 4 4 C 1.38717 * 120.00073 * 0.02562 * 3 2 1 5 5 C 1.38120 * 119.99525 * 179.97438 * 4 3 2 6 6 C 1.38718 * 120.00077 * 0.02562 * 5 4 3 7 7 O 1.35982 * 119.99529 * 179.97438 * 6 5 4 8 8 C 1.42899 * 117.00552 * 0.02562 * 7 6 5 9 9 C 1.38670 * 120.00203 * 0.02562 * 6 5 4 10 10 C 1.50698 * 120.00098 * 179.97438 * 9 6 5 11 11 C 1.50700 * 109.46827 * 85.00484 * 10 9 6 12 12 O 1.21293 * 120.00089 * 359.97438 * 11 10 9 13 13 N 1.34782 * 119.99803 * 180.02562 * 11 10 9 14 14 C 1.46494 * 119.99922 * 359.97438 * 13 11 10 15 15 C 1.37100 * 119.99660 * 179.97438 * 13 11 10 16 16 H 1.07997 * 120.00556 * 322.82157 * 15 13 11 17 17 C 1.38948 * 119.99710 * 142.82718 * 15 13 11 18 18 N 1.31410 * 120.00142 * 158.40704 * 17 15 13 19 19 Si 1.86802 * 120.00169 * 338.40322 * 17 15 13 20 20 H 1.48494 * 109.47194 * 95.72216 * 19 17 15 21 21 H 1.48501 * 109.47206 * 215.72276 * 19 17 15 22 22 H 1.48498 * 109.47130 * 335.71991 * 19 17 15 23 23 C 1.38152 * 120.00111 * 0.23321 * 9 6 5 24 24 H 1.09004 * 109.47560 * 300.00023 * 1 2 3 25 25 H 1.09002 * 109.46923 * 59.99820 * 1 2 3 26 26 H 1.09006 * 109.47436 * 179.97438 * 1 2 3 27 27 H 1.07987 * 120.00463 * 359.97438 * 4 3 2 28 28 H 1.07998 * 119.99590 * 179.97438 * 5 4 3 29 29 H 1.09007 * 109.46543 * 299.99953 * 8 7 6 30 30 H 1.09002 * 109.47077 * 59.99429 * 8 7 6 31 31 H 1.08997 * 109.47179 * 180.02562 * 8 7 6 32 32 H 1.08997 * 109.47410 * 325.00288 * 10 9 6 33 33 H 1.09005 * 109.47438 * 204.99976 * 10 9 6 34 34 H 1.09007 * 109.47154 * 85.14245 * 14 13 11 35 35 H 1.09004 * 109.47278 * 205.13385 * 14 13 11 36 36 H 1.08992 * 109.47544 * 325.13814 * 14 13 11 37 37 H 0.96998 * 120.00490 * 179.97438 * 18 17 15 38 38 H 1.08005 * 120.00355 * 179.72067 * 23 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2908 2.3750 0.0005 5 6 1.9179 3.6056 0.0011 6 6 3.3031 3.6782 0.0005 7 8 3.9204 4.8898 0.0005 8 6 3.0805 6.0459 0.0017 9 6 4.0584 2.5152 -0.0011 10 6 5.5633 2.5940 -0.0022 11 6 6.0596 2.7427 1.4129 12 8 5.2689 2.7813 2.3320 13 7 7.3819 2.8337 1.6572 14 6 8.3368 2.7877 0.5472 15 6 7.8333 2.9695 2.9447 16 1 7.2790 3.5696 3.6509 17 6 9.0043 2.3349 3.3408 18 7 9.6665 2.7720 4.3882 19 14 9.6370 0.8602 2.3844 20 1 10.6513 1.3088 1.3970 21 1 10.2553 -0.1103 3.3231 22 1 8.5074 0.2098 1.6731 23 6 3.4312 1.2842 -0.0070 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 0.2124 2.3185 0.0005 28 1 1.3296 4.5114 0.0011 29 1 2.4506 6.0382 -0.8879 30 1 2.4519 6.0375 0.8921 31 1 3.6984 6.9439 0.0011 32 1 5.8817 3.4542 -0.5911 33 1 5.9746 1.6833 -0.4377 34 1 8.4539 3.7866 0.1270 35 1 9.3004 2.4315 0.9113 36 1 7.9665 2.1108 -0.2227 37 1 10.4838 2.3288 4.6650 38 1 4.0194 0.3784 -0.0128 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000101515530.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:07 Heat of formation + Delta-G solvation = -62.427777 kcal Electronic energy + Delta-G solvation = -21982.176435 eV Core-core repulsion = 18598.706449 eV Total energy + Delta-G solvation = -3383.469986 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.40193 -38.89855 -38.38808 -36.24254 -34.66172 -32.46514 -31.83489 -29.87155 -28.00439 -27.06863 -26.75671 -26.25472 -24.35581 -22.07277 -21.31302 -18.92812 -17.72826 -17.33070 -16.96572 -16.70850 -16.08168 -15.68952 -15.45636 -15.22093 -14.72244 -14.45747 -14.32218 -13.65741 -13.35418 -12.86209 -12.71329 -12.56629 -12.54432 -12.34909 -12.13650 -11.90996 -11.64938 -11.49729 -11.45565 -11.14155 -10.69509 -10.55441 -10.29698 -10.27449 -9.85040 -8.99454 -8.80579 -8.31186 -7.63398 -7.49990 -6.31465 -3.87339 1.42572 1.68351 3.08706 3.27571 3.32289 3.33155 3.54495 3.87435 3.87849 4.22147 4.63605 4.79973 4.86777 5.02745 5.08500 5.09584 5.14925 5.25332 5.27414 5.37316 5.43718 5.56459 5.60898 5.76375 5.77149 5.89252 5.98021 6.03635 6.22504 6.36755 6.37407 6.42624 6.50638 6.82231 7.41396 7.62879 7.67624 8.38018 8.61869 9.07165 9.41458 9.89553 10.81107 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.020090 B = 0.005149 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.399730 B = 5436.356426 C = 6260.008195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.319 6.319 3 C 0.089 3.911 4 C -0.176 4.176 5 C -0.172 4.172 6 C 0.110 3.890 7 O -0.308 6.308 8 C 0.030 3.970 9 C -0.039 4.039 10 C -0.095 4.095 11 C 0.474 3.526 12 O -0.557 6.557 13 N -0.475 5.475 14 C 0.064 3.936 15 C -0.312 4.312 16 H 0.104 0.896 17 C 0.057 3.943 18 N -0.868 5.868 19 Si 0.880 3.120 20 H -0.276 1.276 21 H -0.289 1.289 22 H -0.264 1.264 23 C -0.102 4.102 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.096 0.904 27 H 0.126 0.874 28 H 0.127 0.873 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.051 0.949 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.272 0.728 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.458 -0.040 -14.006 20.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.233 6.233 3 C 0.045 3.955 4 C -0.195 4.195 5 C -0.191 4.191 6 C 0.065 3.935 7 O -0.221 6.221 8 C -0.065 4.065 9 C -0.040 4.040 10 C -0.136 4.136 11 C 0.262 3.738 12 O -0.437 6.437 13 N -0.198 5.198 14 C -0.079 4.079 15 C -0.439 4.439 16 H 0.121 0.879 17 C -0.148 4.148 18 N -0.505 5.505 19 Si 0.708 3.292 20 H -0.203 1.203 21 H -0.216 1.216 22 H -0.189 1.189 23 C -0.120 4.120 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.114 0.886 27 H 0.143 0.857 28 H 0.145 0.855 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.109 0.891 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -14.396 -0.168 -13.386 19.659 hybrid contribution 0.009 -0.500 -0.354 0.613 sum -14.388 -0.669 -13.741 19.906 Atomic orbital electron populations 1.22974 0.79075 1.03486 1.01014 1.86067 1.20771 1.26933 1.89554 1.18752 0.92049 0.83996 1.00739 1.20865 0.99464 0.91729 1.07418 1.20885 0.93072 0.98167 1.06957 1.18622 0.90548 0.85302 0.99003 1.86134 1.35103 1.12018 1.88844 1.22989 0.95855 0.86966 1.00729 1.18538 0.94798 0.89798 1.00859 1.20578 0.91087 1.03837 0.98059 1.20035 0.83049 0.81378 0.89377 1.90565 1.54339 1.52720 1.46118 1.43658 1.03811 1.65928 1.06422 1.21985 0.94663 1.00766 0.90506 1.19045 1.08146 1.29949 0.86728 0.87864 1.25365 0.96185 0.97162 0.96098 1.69758 1.15519 1.38680 1.26551 0.86926 0.79016 0.83779 0.79524 1.20345 1.21584 1.18886 1.20074 0.91254 0.97383 1.03336 0.92889 0.93056 0.88599 0.85655 0.85477 0.93221 0.92879 0.88458 0.88562 0.89136 0.93028 0.91738 0.92770 0.91727 0.84703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.32 -4.50 10.50 -19.68 -0.21 -4.71 16 3 C 0.09 1.38 6.69 -39.24 -0.26 1.12 16 4 C -0.18 -2.43 9.03 -39.45 -0.36 -2.78 16 5 C -0.17 -2.48 9.03 -39.45 -0.36 -2.83 16 6 C 0.11 1.89 6.66 -39.24 -0.26 1.63 16 7 O -0.31 -5.16 9.63 -19.68 -0.19 -5.35 16 8 C 0.03 0.35 9.81 101.05 0.99 1.34 16 9 C -0.04 -0.70 4.38 -104.50 -0.46 -1.16 16 10 C -0.10 -1.77 4.17 -29.04 -0.12 -1.89 16 11 C 0.47 11.59 7.62 -10.98 -0.08 11.50 16 12 O -0.56 -15.88 15.90 5.55 0.09 -15.79 16 13 N -0.48 -12.01 2.59 -122.20 -0.32 -12.33 16 14 C 0.06 1.31 8.78 59.84 0.53 1.83 16 15 C -0.31 -9.17 9.37 -14.93 -0.14 -9.31 16 16 H 0.10 3.42 7.90 -52.49 -0.41 3.01 16 17 C 0.06 1.62 5.29 -17.47 -0.09 1.53 16 18 N -0.87 -25.79 13.96 55.50 0.77 -25.02 16 19 Si 0.88 21.08 24.96 -169.99 -4.24 16.84 16 20 H -0.28 -6.11 6.69 56.52 0.38 -5.73 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.26 -6.26 7.11 56.52 0.40 -5.86 16 23 C -0.10 -1.74 9.61 -39.45 -0.38 -2.12 16 24 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 25 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 26 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.13 1.33 6.29 -52.49 -0.33 1.00 16 28 H 0.13 1.45 6.29 -52.49 -0.33 1.12 16 29 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 30 H 0.05 0.59 7.66 -51.93 -0.40 0.20 16 31 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.10 1.61 7.65 -51.93 -0.40 1.22 16 33 H 0.09 1.44 7.32 -51.93 -0.38 1.06 16 34 H 0.05 0.93 8.14 -51.92 -0.42 0.50 16 35 H 0.06 1.38 3.42 -51.93 -0.18 1.20 16 36 H 0.05 0.90 6.64 -51.93 -0.34 0.56 16 37 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 38 H 0.14 2.16 8.06 -52.48 -0.42 1.74 16 LS Contribution 315.66 15.07 4.76 4.76 Total: -1.00 -35.85 315.66 -4.15 -40.01 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -4.82 Total: 1.48 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: 0.00 Total: 0.12 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 0.46 Total: -37.35 kcal Atomic # 8 Polarization: -25.54 SS G_CDS: -0.31 Total: -25.85 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.24 Total: 16.84 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -35.85 -4.15 -40.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101515530.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.421 kcal (2) G-P(sol) polarization free energy of solvation -35.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds