Wall clock time and date at job start Wed Apr 15 2020 11:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35982 * 116.99716 * 2 1 4 4 C 1.38717 * 120.00073 * 0.02562 * 3 2 1 5 5 C 1.38120 * 119.99525 * 179.97438 * 4 3 2 6 6 C 1.38718 * 120.00077 * 0.02562 * 5 4 3 7 7 O 1.35982 * 119.99529 * 179.97438 * 6 5 4 8 8 C 1.42899 * 117.00552 * 0.02562 * 7 6 5 9 9 C 1.38670 * 120.00203 * 0.02562 * 6 5 4 10 10 C 1.50698 * 120.00098 * 179.97438 * 9 6 5 11 11 C 1.50700 * 109.46827 * 85.00484 * 10 9 6 12 12 O 1.21293 * 120.00089 * 359.97438 * 11 10 9 13 13 N 1.34782 * 119.99803 * 180.02562 * 11 10 9 14 14 C 1.46494 * 119.99922 * 359.97438 * 13 11 10 15 15 C 1.37100 * 119.99660 * 179.97438 * 13 11 10 16 16 H 1.07997 * 120.00556 * 322.82157 * 15 13 11 17 17 C 1.38948 * 119.99710 * 142.82718 * 15 13 11 18 18 N 1.31410 * 120.00142 * 158.40704 * 17 15 13 19 19 Si 1.86802 * 120.00169 * 338.40322 * 17 15 13 20 20 H 1.48494 * 109.47194 * 95.72216 * 19 17 15 21 21 H 1.48501 * 109.47206 * 215.72276 * 19 17 15 22 22 H 1.48498 * 109.47130 * 335.71991 * 19 17 15 23 23 C 1.38152 * 120.00111 * 0.23321 * 9 6 5 24 24 H 1.09004 * 109.47560 * 300.00023 * 1 2 3 25 25 H 1.09002 * 109.46923 * 59.99820 * 1 2 3 26 26 H 1.09006 * 109.47436 * 179.97438 * 1 2 3 27 27 H 1.07987 * 120.00463 * 359.97438 * 4 3 2 28 28 H 1.07998 * 119.99590 * 179.97438 * 5 4 3 29 29 H 1.09007 * 109.46543 * 299.99953 * 8 7 6 30 30 H 1.09002 * 109.47077 * 59.99429 * 8 7 6 31 31 H 1.08997 * 109.47179 * 180.02562 * 8 7 6 32 32 H 1.08997 * 109.47410 * 325.00288 * 10 9 6 33 33 H 1.09005 * 109.47438 * 204.99976 * 10 9 6 34 34 H 1.09007 * 109.47154 * 85.14245 * 14 13 11 35 35 H 1.09004 * 109.47278 * 205.13385 * 14 13 11 36 36 H 1.08992 * 109.47544 * 325.13814 * 14 13 11 37 37 H 0.96998 * 120.00490 * 179.97438 * 18 17 15 38 38 H 1.08005 * 120.00355 * 179.72067 * 23 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2908 2.3750 0.0005 5 6 1.9179 3.6056 0.0011 6 6 3.3031 3.6782 0.0005 7 8 3.9204 4.8898 0.0005 8 6 3.0805 6.0459 0.0017 9 6 4.0584 2.5152 -0.0011 10 6 5.5633 2.5940 -0.0022 11 6 6.0596 2.7427 1.4129 12 8 5.2689 2.7813 2.3320 13 7 7.3819 2.8337 1.6572 14 6 8.3368 2.7877 0.5472 15 6 7.8333 2.9695 2.9447 16 1 7.2790 3.5696 3.6509 17 6 9.0043 2.3349 3.3408 18 7 9.6665 2.7720 4.3882 19 14 9.6370 0.8602 2.3844 20 1 10.6513 1.3088 1.3970 21 1 10.2553 -0.1103 3.3231 22 1 8.5074 0.2098 1.6731 23 6 3.4312 1.2842 -0.0070 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 0.2124 2.3185 0.0005 28 1 1.3296 4.5114 0.0011 29 1 2.4506 6.0382 -0.8879 30 1 2.4519 6.0375 0.8921 31 1 3.6984 6.9439 0.0011 32 1 5.8817 3.4542 -0.5911 33 1 5.9746 1.6833 -0.4377 34 1 8.4539 3.7866 0.1270 35 1 9.3004 2.4315 0.9113 36 1 7.9665 2.1108 -0.2227 37 1 10.4838 2.3288 4.6650 38 1 4.0194 0.3784 -0.0128 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000101515530.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:06 Heat of formation + Delta-G solvation = -88.797931 kcal Electronic energy + Delta-G solvation = -21983.319931 eV Core-core repulsion = 18598.706449 eV Total energy + Delta-G solvation = -3384.613482 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -41.57952 -40.34838 -39.79895 -37.41399 -36.60949 -34.21699 -33.53946 -30.96646 -29.33072 -28.21120 -27.86863 -27.71222 -26.24392 -23.23138 -22.56167 -20.65335 -19.05075 -18.89801 -18.41855 -17.90433 -17.81533 -17.26095 -16.64023 -16.35554 -16.20455 -15.68733 -15.58497 -15.26746 -14.73936 -14.51165 -14.16355 -14.04704 -14.00891 -13.64654 -13.52776 -13.27193 -12.92851 -12.80635 -12.54980 -12.40899 -12.37121 -12.22650 -11.80626 -11.60587 -11.30490 -11.03915 -10.44693 -9.83572 -9.67231 -8.64167 -8.50084 -6.12309 0.24846 0.51516 1.21099 1.34360 1.47230 2.00907 2.19765 2.35952 2.51789 2.62608 2.89202 3.05640 3.69871 3.78672 4.07369 4.12845 4.22909 4.29172 4.36120 4.38470 4.41759 4.43877 4.48660 4.52194 4.61338 4.71931 4.72488 4.77395 4.84306 4.91173 5.19977 5.26871 5.33760 5.55483 5.64968 6.04368 6.39048 6.57457 6.61337 6.97067 7.32506 7.92470 8.67759 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.020090 B = 0.005149 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.399730 B = 5436.356426 C = 6260.008195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.338 6.338 3 C 0.081 3.919 4 C -0.169 4.169 5 C -0.171 4.171 6 C 0.090 3.910 7 O -0.337 6.337 8 C 0.020 3.980 9 C -0.071 4.071 10 C -0.080 4.080 11 C 0.466 3.534 12 O -0.611 6.611 13 N -0.488 5.488 14 C 0.057 3.943 15 C -0.335 4.335 16 H 0.038 0.962 17 C 0.009 3.991 18 N -0.915 5.915 19 Si 0.956 3.044 20 H -0.236 1.236 21 H -0.291 1.291 22 H -0.257 1.257 23 C -0.122 4.122 24 H 0.059 0.941 25 H 0.070 0.930 26 H 0.118 0.882 27 H 0.161 0.839 28 H 0.157 0.843 29 H 0.077 0.923 30 H 0.053 0.947 31 H 0.110 0.890 32 H 0.115 0.885 33 H 0.120 0.880 34 H 0.074 0.926 35 H 0.056 0.944 36 H 0.098 0.902 37 H 0.280 0.720 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.426 -1.084 -17.035 23.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.252 6.252 3 C 0.036 3.964 4 C -0.187 4.187 5 C -0.189 4.189 6 C 0.045 3.955 7 O -0.251 6.251 8 C -0.074 4.074 9 C -0.072 4.072 10 C -0.119 4.119 11 C 0.257 3.743 12 O -0.495 6.495 13 N -0.211 5.211 14 C -0.085 4.085 15 C -0.463 4.463 16 H 0.056 0.944 17 C -0.193 4.193 18 N -0.552 5.552 19 Si 0.779 3.221 20 H -0.161 1.161 21 H -0.218 1.218 22 H -0.181 1.181 23 C -0.140 4.140 24 H 0.077 0.923 25 H 0.088 0.912 26 H 0.136 0.864 27 H 0.178 0.822 28 H 0.175 0.825 29 H 0.096 0.904 30 H 0.072 0.928 31 H 0.129 0.871 32 H 0.133 0.867 33 H 0.138 0.862 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.116 0.884 37 H 0.089 0.911 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -15.358 -1.191 -16.454 22.539 hybrid contribution 0.144 -0.084 0.661 0.681 sum -15.214 -1.275 -15.794 21.966 Atomic orbital electron populations 1.23332 0.76566 1.05492 1.02197 1.86046 1.23403 1.26413 1.89383 1.18889 0.91884 0.85169 1.00442 1.21273 1.01179 0.90825 1.05434 1.21263 0.92341 0.99718 1.05593 1.18888 0.91717 0.85285 0.99581 1.86075 1.37080 1.12960 1.89005 1.23287 0.96255 0.85788 1.02073 1.18653 0.94640 0.90834 1.03058 1.20483 0.91882 1.05941 0.93620 1.21101 0.82328 0.79367 0.91545 1.90518 1.55736 1.54680 1.48557 1.43814 1.05185 1.66046 1.06043 1.22254 0.93199 1.03418 0.89635 1.18636 1.08470 1.30687 0.88478 0.94379 1.26209 0.95886 0.99696 0.97496 1.69877 1.16415 1.40159 1.28795 0.85741 0.79332 0.78432 0.78642 1.16103 1.21776 1.18106 1.20212 0.92473 0.97145 1.04196 0.92257 0.91154 0.86410 0.82184 0.82503 0.90414 0.92821 0.87125 0.86707 0.86197 0.90787 0.92538 0.88396 0.91058 0.84737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.40 16 2 O -0.34 -8.96 10.50 -93.35 -0.98 -9.94 16 3 C 0.08 2.40 6.69 22.49 0.15 2.55 16 4 C -0.17 -4.23 9.03 22.36 0.20 -4.03 16 5 C -0.17 -4.57 9.03 22.36 0.20 -4.37 16 6 C 0.09 3.03 6.66 22.49 0.15 3.18 16 7 O -0.34 -11.13 9.63 -93.35 -0.90 -12.03 16 8 C 0.02 0.44 9.81 113.37 1.11 1.55 16 9 C -0.07 -2.54 4.38 -19.78 -0.09 -2.62 16 10 C -0.08 -2.86 4.17 29.10 0.12 -2.74 16 11 C 0.47 23.19 7.62 87.66 0.67 23.86 16 12 O -0.61 -36.54 15.90 -3.07 -0.05 -36.59 16 13 N -0.49 -24.88 2.59 -658.90 -1.70 -26.58 16 14 C 0.06 2.16 8.78 127.77 1.12 3.28 16 15 C -0.33 -20.67 9.37 84.04 0.79 -19.88 16 16 H 0.04 2.77 7.90 -2.91 -0.02 2.74 16 17 C 0.01 0.50 5.29 84.93 0.45 0.95 16 18 N -0.91 -56.19 13.96 21.66 0.30 -55.88 16 19 Si 0.96 42.98 24.96 68.60 1.71 44.69 16 20 H -0.24 -9.14 6.69 99.48 0.67 -8.47 16 21 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 22 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 23 C -0.12 -4.10 9.61 22.36 0.21 -3.88 16 24 H 0.06 0.86 7.66 -2.38 -0.02 0.84 16 25 H 0.07 0.84 7.66 -2.39 -0.02 0.82 16 26 H 0.12 1.30 8.14 -2.38 -0.02 1.28 16 27 H 0.16 2.77 6.29 -2.92 -0.02 2.75 16 28 H 0.16 3.10 6.29 -2.91 -0.02 3.08 16 29 H 0.08 1.22 7.66 -2.38 -0.02 1.21 16 30 H 0.05 1.14 7.66 -2.39 -0.02 1.12 16 31 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.11 3.64 7.65 -2.39 -0.02 3.63 16 33 H 0.12 3.51 7.32 -2.38 -0.02 3.49 16 34 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 35 H 0.06 2.23 3.42 -2.38 -0.01 2.22 16 36 H 0.10 2.84 6.64 -2.39 -0.02 2.82 16 37 H 0.28 15.67 8.31 -92.71 -0.77 14.90 16 38 H 0.13 4.31 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -84.41 315.66 5.62 -78.78 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 1.04 Total: 18.31 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: 6.21 Total: -0.75 kcal Atomic # 7 Polarization: -81.07 SS G_CDS: -1.40 Total: -82.47 kcal Atomic # 8 Polarization: -56.64 SS G_CDS: -1.93 Total: -58.56 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 1.71 Total: 44.69 kcal Total: -84.41 5.62 -78.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101515530.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.015 kcal (2) G-P(sol) polarization free energy of solvation -84.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds