Wall clock time and date at job start Wed Apr 15 2020 11:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35899 * 117.00003 * 2 1 4 4 C 1.38771 * 120.02705 * 0.02562 * 3 2 1 5 5 C 1.38168 * 120.05437 * 179.97438 * 4 3 2 6 6 C 1.38179 * 120.11135 * 359.97438 * 5 4 3 7 7 C 1.38776 * 120.05215 * 0.02562 * 6 5 4 8 8 O 1.35896 * 120.02782 * 180.02562 * 7 6 5 9 9 C 1.42902 * 116.99987 * 359.97349 * 8 7 6 10 10 C 1.38626 * 120.02473 * 179.97438 * 3 2 1 11 11 C 1.50698 * 120.05962 * 0.30323 * 10 3 2 12 12 C 1.50698 * 109.46987 * 269.72277 * 11 10 3 13 13 O 1.21296 * 120.00089 * 359.97438 * 12 11 10 14 14 N 1.34781 * 120.00081 * 179.97438 * 12 11 10 15 15 C 1.46496 * 119.99743 * 0.02562 * 14 12 11 16 16 C 1.37095 * 119.99869 * 179.97438 * 14 12 11 17 17 H 1.08002 * 120.00563 * 21.70632 * 16 14 12 18 18 C 1.38957 * 120.00112 * 201.70366 * 16 14 12 19 19 N 1.31411 * 119.99578 * 11.34677 * 18 16 14 20 20 Si 1.86797 * 120.00132 * 191.34578 * 18 16 14 21 21 H 1.48493 * 109.47117 * 85.07081 * 20 18 16 22 22 H 1.48497 * 109.47027 * 205.07209 * 20 18 16 23 23 H 1.48496 * 109.47108 * 325.07000 * 20 18 16 24 24 H 1.08999 * 109.47221 * 59.99750 * 1 2 3 25 25 H 1.09003 * 109.47599 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47282 * 300.00062 * 1 2 3 27 27 H 1.08005 * 119.97148 * 359.97232 * 4 3 2 28 28 H 1.08000 * 119.94784 * 180.02562 * 5 4 3 29 29 H 1.07996 * 119.97483 * 179.97438 * 6 5 4 30 30 H 1.08999 * 109.46996 * 179.97438 * 9 8 7 31 31 H 1.08995 * 109.47346 * 300.00306 * 9 8 7 32 32 H 1.09003 * 109.46714 * 60.00236 * 9 8 7 33 33 H 1.09003 * 109.46925 * 29.72036 * 11 10 3 34 34 H 1.09000 * 109.47880 * 149.71865 * 11 10 3 35 35 H 1.08995 * 109.47117 * 92.17914 * 15 14 12 36 36 H 1.09009 * 109.47091 * 212.17146 * 15 14 12 37 37 H 1.08996 * 109.47469 * 332.17064 * 15 14 12 38 38 H 0.96999 * 119.99639 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2907 2.3751 0.0005 5 6 1.9174 3.6064 0.0011 6 6 3.2971 3.6821 0.0016 7 6 4.0568 2.5207 0.0011 8 8 5.4137 2.5957 0.0021 9 6 5.9912 3.9029 0.0032 10 6 3.4303 1.2840 0.0005 11 6 4.2529 0.0214 -0.0058 12 6 4.5327 -0.4029 1.4129 13 8 4.1064 0.2555 2.3381 14 7 5.2566 -1.5141 1.6537 15 6 5.7718 -2.3090 0.5362 16 6 5.5115 -1.8998 2.9443 17 1 4.8764 -1.5543 3.7467 18 6 6.5870 -2.7352 3.2202 19 7 7.4865 -2.9762 2.2930 20 14 6.7543 -3.5156 4.9091 21 1 5.9554 -4.7664 4.9577 22 1 8.1820 -3.8297 5.1701 23 1 6.2584 -2.5711 5.9422 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.2121 2.3185 0.0005 28 1 1.3279 4.5114 0.0019 29 1 3.7846 4.6457 0.0016 30 1 7.0780 3.8199 0.0044 31 1 5.6687 4.4433 -0.8867 32 1 5.6674 4.4424 0.8932 33 1 3.7035 -0.7676 -0.5194 34 1 5.1949 0.2039 -0.5229 35 1 6.7765 -1.9708 0.2826 36 1 5.8039 -3.3603 0.8225 37 1 5.1186 -2.1875 -0.3278 38 1 8.2371 -3.5597 2.4855 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158101628.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:14 Heat of formation + Delta-G solvation = -68.266673 kcal Electronic energy + Delta-G solvation = -22321.300064 eV Core-core repulsion = 18937.576884 eV Total energy + Delta-G solvation = -3383.723180 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.36535 -38.71863 -38.05985 -36.11141 -34.49099 -32.38759 -31.34045 -29.27795 -27.74126 -27.63448 -26.41041 -25.80209 -24.01592 -21.61494 -21.53084 -18.88568 -18.07764 -16.69554 -16.61300 -16.08478 -16.04272 -15.46823 -15.31212 -15.26495 -14.58980 -14.37431 -13.97196 -13.87896 -13.02525 -12.97255 -12.52653 -12.23591 -12.12112 -11.87405 -11.64274 -11.35975 -11.31021 -11.28348 -11.05598 -10.79561 -10.72164 -10.51766 -10.43598 -10.25844 -10.03708 -8.87215 -8.31157 -7.86586 -7.83037 -7.49930 -6.14752 -3.70154 1.64080 1.72194 3.18164 3.26177 3.32648 3.38693 3.91710 3.98479 4.15247 4.29227 4.90317 5.11875 5.13798 5.20105 5.22420 5.27565 5.28700 5.31911 5.32461 5.50260 5.56969 5.61717 5.67888 5.96843 6.09982 6.19048 6.37308 6.41504 6.60669 6.62529 6.77132 6.77327 7.06835 7.39973 7.60155 7.69895 7.71199 8.31084 8.68164 9.37767 9.62719 10.21387 10.88978 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.019093 B = 0.005523 C = 0.004786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.121315 B = 5068.802782 C = 5848.945035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.306 6.306 3 C 0.173 3.827 4 C -0.246 4.246 5 C -0.053 4.053 6 C -0.246 4.246 7 C 0.175 3.825 8 O -0.304 6.304 9 C 0.030 3.970 10 C -0.109 4.109 11 C -0.079 4.079 12 C 0.463 3.537 13 O -0.585 6.585 14 N -0.454 5.454 15 C 0.115 3.885 16 C -0.299 4.299 17 H 0.096 0.904 18 C 0.026 3.974 19 N -0.888 5.888 20 Si 0.925 3.075 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.271 1.271 24 H 0.052 0.948 25 H 0.098 0.902 26 H 0.054 0.946 27 H 0.125 0.875 28 H 0.122 0.878 29 H 0.125 0.875 30 H 0.098 0.902 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.055 0.945 36 H 0.067 0.933 37 H 0.025 0.975 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.721 9.649 -9.193 15.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.218 6.218 3 C 0.127 3.873 4 C -0.265 4.265 5 C -0.071 4.071 6 C -0.265 4.265 7 C 0.129 3.871 8 O -0.216 6.216 9 C -0.065 4.065 10 C -0.110 4.110 11 C -0.119 4.119 12 C 0.251 3.749 13 O -0.469 6.469 14 N -0.174 5.174 15 C -0.029 4.029 16 C -0.427 4.427 17 H 0.114 0.886 18 C -0.176 4.176 19 N -0.528 5.528 20 Si 0.752 3.248 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.196 1.196 24 H 0.071 0.929 25 H 0.116 0.884 26 H 0.073 0.927 27 H 0.143 0.857 28 H 0.140 0.860 29 H 0.143 0.857 30 H 0.117 0.883 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.043 0.957 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.506 9.480 -8.738 15.446 hybrid contribution 0.014 -0.054 0.779 0.781 sum -8.492 9.426 -7.959 14.977 Atomic orbital electron populations 1.23023 0.78772 1.03729 1.01005 1.86112 1.20918 1.26643 1.88164 1.18354 0.90863 0.84180 0.93862 1.20987 0.99613 0.92189 1.13713 1.20524 0.93624 0.96757 0.96191 1.21005 0.94810 0.97038 1.13619 1.18378 0.82420 0.92725 0.93585 1.86139 1.17236 1.30219 1.88019 1.23030 0.99197 0.83360 1.00939 1.17928 0.90327 0.93333 1.09445 1.20244 0.99599 0.94233 0.97796 1.19869 0.83893 0.81604 0.89569 1.90492 1.55929 1.54637 1.45849 1.43548 1.46530 1.20810 1.06512 1.21470 0.97215 0.97325 0.86842 1.19637 1.10998 1.27410 0.84624 0.88622 1.25297 0.94618 0.98515 0.99120 1.70016 1.11762 1.37275 1.33782 0.85964 0.77107 0.79380 0.82349 1.20471 1.21081 1.19592 0.92949 0.88396 0.92716 0.85731 0.86007 0.85704 0.88330 0.92969 0.92715 0.89452 0.89267 0.92630 0.91389 0.95659 0.92525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.81 101.05 0.99 1.34 16 2 O -0.31 -5.33 9.54 -19.42 -0.19 -5.52 16 3 C 0.17 3.14 6.66 -39.24 -0.26 2.88 16 4 C -0.25 -3.67 9.04 -39.41 -0.36 -4.03 16 5 C -0.05 -0.73 10.04 -39.63 -0.40 -1.13 16 6 C -0.25 -3.71 9.04 -39.40 -0.36 -4.07 16 7 C 0.17 3.23 6.66 -39.24 -0.26 2.97 16 8 O -0.30 -5.52 9.54 -19.41 -0.19 -5.70 16 9 C 0.03 0.37 9.81 101.05 0.99 1.37 16 10 C -0.11 -2.18 4.40 -104.33 -0.46 -2.64 16 11 C -0.08 -1.68 3.91 -29.04 -0.11 -1.80 16 12 C 0.46 12.37 7.62 -10.98 -0.08 12.29 16 13 O -0.58 -17.60 15.72 5.54 0.09 -17.51 16 14 N -0.45 -12.57 3.02 -122.19 -0.37 -12.93 16 15 C 0.12 2.77 8.52 59.84 0.51 3.28 16 16 C -0.30 -8.85 9.31 -14.93 -0.14 -8.99 16 17 H 0.10 2.97 7.39 -52.49 -0.39 2.58 16 18 C 0.03 0.73 5.12 -17.47 -0.09 0.64 16 19 N -0.89 -24.78 10.56 55.50 0.59 -24.20 16 20 Si 0.92 21.77 29.57 -169.99 -5.03 16.74 16 21 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 22 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 24 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 25 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.05 0.61 7.66 -51.93 -0.40 0.21 16 27 H 0.12 1.48 6.29 -52.48 -0.33 1.15 16 28 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 29 H 0.13 1.52 6.29 -52.49 -0.33 1.19 16 30 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 32 H 0.05 0.65 7.66 -51.93 -0.40 0.25 16 33 H 0.09 1.73 6.79 -51.93 -0.35 1.38 16 34 H 0.09 1.82 7.50 -51.93 -0.39 1.43 16 35 H 0.06 1.38 7.56 -51.93 -0.39 0.98 16 36 H 0.07 1.70 7.00 -51.92 -0.36 1.33 16 37 H 0.02 0.51 6.36 -51.93 -0.33 0.18 16 38 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 317.66 15.07 4.79 4.79 Total: -1.00 -35.66 317.66 -5.20 -40.86 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -4.87 Total: 1.35 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: -0.02 Total: 2.12 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: 0.22 Total: -37.13 kcal Atomic # 8 Polarization: -28.45 SS G_CDS: -0.28 Total: -28.73 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -35.66 -5.20 -40.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158101628.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.411 kcal (2) G-P(sol) polarization free energy of solvation -35.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds