Wall clock time and date at job start Wed Apr 15 2020 11:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35899 * 117.00003 * 2 1 4 4 C 1.38771 * 120.02705 * 0.02562 * 3 2 1 5 5 C 1.38168 * 120.05437 * 179.97438 * 4 3 2 6 6 C 1.38179 * 120.11135 * 359.97438 * 5 4 3 7 7 C 1.38776 * 120.05215 * 0.02562 * 6 5 4 8 8 O 1.35896 * 120.02782 * 180.02562 * 7 6 5 9 9 C 1.42902 * 116.99987 * 359.97349 * 8 7 6 10 10 C 1.38626 * 120.02473 * 179.97438 * 3 2 1 11 11 C 1.50698 * 120.05962 * 0.30323 * 10 3 2 12 12 C 1.50698 * 109.46987 * 269.72277 * 11 10 3 13 13 O 1.21296 * 120.00089 * 359.97438 * 12 11 10 14 14 N 1.34781 * 120.00081 * 179.97438 * 12 11 10 15 15 C 1.46496 * 119.99743 * 0.02562 * 14 12 11 16 16 C 1.37095 * 119.99869 * 179.97438 * 14 12 11 17 17 H 1.08002 * 120.00563 * 21.70632 * 16 14 12 18 18 C 1.38957 * 120.00112 * 201.70366 * 16 14 12 19 19 N 1.31411 * 119.99578 * 11.34677 * 18 16 14 20 20 Si 1.86797 * 120.00132 * 191.34578 * 18 16 14 21 21 H 1.48493 * 109.47117 * 85.07081 * 20 18 16 22 22 H 1.48497 * 109.47027 * 205.07209 * 20 18 16 23 23 H 1.48496 * 109.47108 * 325.07000 * 20 18 16 24 24 H 1.08999 * 109.47221 * 59.99750 * 1 2 3 25 25 H 1.09003 * 109.47599 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47282 * 300.00062 * 1 2 3 27 27 H 1.08005 * 119.97148 * 359.97232 * 4 3 2 28 28 H 1.08000 * 119.94784 * 180.02562 * 5 4 3 29 29 H 1.07996 * 119.97483 * 179.97438 * 6 5 4 30 30 H 1.08999 * 109.46996 * 179.97438 * 9 8 7 31 31 H 1.08995 * 109.47346 * 300.00306 * 9 8 7 32 32 H 1.09003 * 109.46714 * 60.00236 * 9 8 7 33 33 H 1.09003 * 109.46925 * 29.72036 * 11 10 3 34 34 H 1.09000 * 109.47880 * 149.71865 * 11 10 3 35 35 H 1.08995 * 109.47117 * 92.17914 * 15 14 12 36 36 H 1.09009 * 109.47091 * 212.17146 * 15 14 12 37 37 H 1.08996 * 109.47469 * 332.17064 * 15 14 12 38 38 H 0.96999 * 119.99639 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2907 2.3751 0.0005 5 6 1.9174 3.6064 0.0011 6 6 3.2971 3.6821 0.0016 7 6 4.0568 2.5207 0.0011 8 8 5.4137 2.5957 0.0021 9 6 5.9912 3.9029 0.0032 10 6 3.4303 1.2840 0.0005 11 6 4.2529 0.0214 -0.0058 12 6 4.5327 -0.4029 1.4129 13 8 4.1064 0.2555 2.3381 14 7 5.2566 -1.5141 1.6537 15 6 5.7718 -2.3090 0.5362 16 6 5.5115 -1.8998 2.9443 17 1 4.8764 -1.5543 3.7467 18 6 6.5870 -2.7352 3.2202 19 7 7.4865 -2.9762 2.2930 20 14 6.7543 -3.5156 4.9091 21 1 5.9554 -4.7664 4.9577 22 1 8.1820 -3.8297 5.1701 23 1 6.2584 -2.5711 5.9422 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.2121 2.3185 0.0005 28 1 1.3279 4.5114 0.0019 29 1 3.7846 4.6457 0.0016 30 1 7.0780 3.8199 0.0044 31 1 5.6687 4.4433 -0.8867 32 1 5.6674 4.4424 0.8932 33 1 3.7035 -0.7676 -0.5194 34 1 5.1949 0.2039 -0.5229 35 1 6.7765 -1.9708 0.2826 36 1 5.8039 -3.3603 0.8225 37 1 5.1186 -2.1875 -0.3278 38 1 8.2371 -3.5597 2.4855 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158101628.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:13 Heat of formation + Delta-G solvation = -92.813848 kcal Electronic energy + Delta-G solvation = -22322.364509 eV Core-core repulsion = 18937.576884 eV Total energy + Delta-G solvation = -3384.787625 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.63002 -40.05777 -39.90523 -37.30004 -36.59912 -33.99655 -33.33935 -30.43072 -29.29988 -28.64050 -27.95708 -27.33895 -26.02568 -22.99761 -22.68902 -20.69367 -19.34877 -18.86128 -17.92593 -17.83246 -17.24418 -16.85207 -16.60132 -16.36140 -16.33424 -15.92334 -15.74481 -15.67307 -14.38457 -14.24013 -14.07575 -13.75130 -13.47430 -13.29670 -13.21074 -13.09174 -13.02287 -12.63706 -12.55873 -12.34263 -12.31922 -12.18571 -12.13459 -11.59488 -11.58263 -10.99464 -10.35692 -9.66479 -9.23069 -9.03065 -8.28908 -5.94570 0.41638 0.51998 1.38234 1.39199 1.52272 2.08066 2.10343 2.29510 2.75507 2.83148 3.12175 3.26551 3.78501 4.01277 4.08740 4.17143 4.23881 4.32770 4.41123 4.43038 4.46672 4.48489 4.53258 4.63055 4.71484 4.72216 4.73958 5.03795 5.05915 5.30423 5.38110 5.41415 5.45626 5.49844 5.64141 6.12078 6.46182 6.50985 6.56387 7.20994 7.51579 8.10452 8.72821 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.019093 B = 0.005523 C = 0.004786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.121315 B = 5068.802782 C = 5848.945035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.337 6.337 3 C 0.158 3.842 4 C -0.247 4.247 5 C -0.043 4.043 6 C -0.248 4.248 7 C 0.156 3.844 8 O -0.339 6.339 9 C 0.021 3.979 10 C -0.158 4.158 11 C -0.060 4.060 12 C 0.453 3.547 13 O -0.628 6.628 14 N -0.470 5.470 15 C 0.126 3.874 16 C -0.342 4.342 17 H 0.067 0.933 18 C -0.006 4.006 19 N -0.900 5.900 20 Si 0.992 3.008 21 H -0.264 1.264 22 H -0.270 1.270 23 H -0.278 1.278 24 H 0.079 0.921 25 H 0.113 0.887 26 H 0.059 0.941 27 H 0.157 0.843 28 H 0.166 0.834 29 H 0.155 0.845 30 H 0.110 0.890 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.044 0.956 36 H 0.055 0.945 37 H 0.061 0.939 38 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.700 10.687 -9.755 17.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.251 6.251 3 C 0.112 3.888 4 C -0.266 4.266 5 C -0.060 4.060 6 C -0.267 4.267 7 C 0.110 3.890 8 O -0.253 6.253 9 C -0.074 4.074 10 C -0.160 4.160 11 C -0.100 4.100 12 C 0.243 3.757 13 O -0.515 6.515 14 N -0.190 5.190 15 C -0.017 4.017 16 C -0.470 4.470 17 H 0.085 0.915 18 C -0.207 4.207 19 N -0.539 5.539 20 Si 0.815 3.185 21 H -0.189 1.189 22 H -0.195 1.195 23 H -0.203 1.203 24 H 0.097 0.903 25 H 0.131 0.869 26 H 0.077 0.923 27 H 0.174 0.826 28 H 0.184 0.816 29 H 0.172 0.828 30 H 0.129 0.871 31 H 0.098 0.902 32 H 0.078 0.922 33 H 0.116 0.884 34 H 0.110 0.890 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.477 10.507 -9.340 16.954 hybrid contribution 0.299 -0.317 0.932 1.029 sum -9.178 10.189 -8.409 16.086 Atomic orbital electron populations 1.23355 0.76195 1.05387 1.02466 1.86053 1.23745 1.27080 1.88229 1.18627 0.90653 0.85458 0.94083 1.21394 1.01125 0.91492 1.12589 1.21097 0.93469 0.98009 0.93472 1.21393 0.95498 0.97136 1.12666 1.18685 0.82838 0.93394 0.94101 1.86074 1.17621 1.33373 1.88217 1.23341 0.99793 0.81730 1.02488 1.18119 0.91492 0.93211 1.13141 1.20021 1.00296 0.95828 0.93846 1.20812 0.82663 0.80761 0.91504 1.90429 1.57390 1.55855 1.47800 1.43845 1.46758 1.21620 1.06730 1.21399 0.97379 0.95886 0.87010 1.19596 1.12272 1.29873 0.85296 0.91464 1.26112 0.93547 0.97885 1.03139 1.70095 1.11690 1.36806 1.35329 0.84978 0.77827 0.78463 0.77196 1.18948 1.19466 1.20321 0.90288 0.86854 0.92264 0.82598 0.81622 0.82758 0.87144 0.90151 0.92250 0.88426 0.89038 0.93735 0.92664 0.92013 0.91769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.81 113.37 1.11 1.55 16 2 O -0.34 -11.74 9.54 -92.41 -0.88 -12.62 16 3 C 0.16 5.66 6.66 22.49 0.15 5.81 16 4 C -0.25 -6.79 9.04 22.38 0.20 -6.59 16 5 C -0.04 -1.04 10.04 22.24 0.22 -0.82 16 6 C -0.25 -6.97 9.04 22.38 0.20 -6.77 16 7 C 0.16 5.73 6.66 22.49 0.15 5.88 16 8 O -0.34 -12.48 9.54 -92.38 -0.88 -13.36 16 9 C 0.02 0.49 9.81 113.37 1.11 1.60 16 10 C -0.16 -6.45 4.40 -19.68 -0.09 -6.54 16 11 C -0.06 -2.66 3.91 29.10 0.11 -2.54 16 12 C 0.45 25.25 7.62 87.66 0.67 25.91 16 13 O -0.63 -39.67 15.72 -3.08 -0.05 -39.72 16 14 N -0.47 -26.98 3.02 -658.89 -1.99 -28.97 16 15 C 0.13 6.20 8.52 127.77 1.09 7.29 16 16 C -0.34 -21.09 9.31 84.04 0.78 -20.30 16 17 H 0.07 4.42 7.39 -2.91 -0.02 4.40 16 18 C -0.01 -0.33 5.12 84.93 0.43 0.10 16 19 N -0.90 -50.47 10.56 21.67 0.23 -50.24 16 20 Si 0.99 44.90 29.57 68.60 2.03 46.93 16 21 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 22 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 23 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 24 H 0.08 1.29 7.66 -2.39 -0.02 1.27 16 25 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.06 1.23 7.66 -2.39 -0.02 1.21 16 27 H 0.16 3.14 6.29 -2.91 -0.02 3.13 16 28 H 0.17 2.53 8.06 -2.91 -0.02 2.51 16 29 H 0.15 3.25 6.29 -2.91 -0.02 3.23 16 30 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.08 1.43 7.66 -2.39 -0.02 1.41 16 32 H 0.06 1.33 7.66 -2.39 -0.02 1.32 16 33 H 0.10 3.97 6.79 -2.39 -0.02 3.95 16 34 H 0.09 3.89 7.50 -2.39 -0.02 3.87 16 35 H 0.04 2.25 7.56 -2.39 -0.02 2.23 16 36 H 0.05 2.80 7.00 -2.38 -0.02 2.78 16 37 H 0.06 2.52 6.36 -2.39 -0.02 2.50 16 38 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -81.06 317.66 5.68 -75.38 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: 1.07 Total: 18.01 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: 6.15 Total: 4.60 kcal Atomic # 7 Polarization: -77.45 SS G_CDS: -1.76 Total: -79.21 kcal Atomic # 8 Polarization: -63.89 SS G_CDS: -1.81 Total: -65.70 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -81.06 5.68 -75.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158101628.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.435 kcal (2) G-P(sol) polarization free energy of solvation -81.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds