Wall clock time and date at job start Wed Apr 15 2020 11:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42902 * 113.99966 * 2 1 4 4 C 1.52998 * 109.46985 * 180.02562 * 3 2 1 5 5 O 1.42901 * 109.47152 * 65.00444 * 4 3 2 6 6 C 1.35714 * 117.00012 * 179.97438 * 5 4 3 7 7 C 1.39015 * 119.90478 * 0.29453 * 6 5 4 8 8 C 1.37688 * 120.09217 * 180.25487 * 7 6 5 9 9 C 1.39803 * 119.90626 * 359.45168 * 8 7 6 10 10 C 1.47498 * 120.09307 * 180.29727 * 9 8 7 11 11 O 1.21616 * 119.99770 * 318.98698 * 10 9 8 12 12 N 1.34779 * 119.99564 * 138.99183 * 10 9 8 13 13 C 1.46500 * 120.00142 * 7.76192 * 12 10 9 14 14 C 1.36901 * 119.99604 * 187.76119 * 12 10 9 15 15 H 1.08000 * 120.00276 * 317.83656 * 14 12 10 16 16 C 1.39020 * 119.99981 * 137.83626 * 14 12 10 17 17 N 1.31385 * 119.99791 * 44.08701 * 16 14 12 18 18 Si 1.86797 * 119.99970 * 224.08530 * 16 14 12 19 19 H 1.48501 * 109.47069 * 60.00248 * 18 16 14 20 20 H 1.48506 * 109.46658 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47198 * 299.99844 * 18 16 14 22 22 C 1.39791 * 119.80968 * 0.27376 * 9 8 7 23 23 C 1.37690 * 119.90677 * 0.02562 * 22 9 8 24 24 H 1.09000 * 109.47390 * 299.99540 * 1 2 3 25 25 H 1.09002 * 109.47338 * 60.00085 * 1 2 3 26 26 H 1.09001 * 109.47226 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46602 * 60.00437 * 3 2 1 28 28 H 1.08994 * 109.47482 * 300.00543 * 3 2 1 29 29 H 1.09002 * 109.47381 * 305.00215 * 4 3 2 30 30 H 1.09007 * 109.47179 * 185.00594 * 4 3 2 31 31 H 1.08000 * 119.95654 * 359.97438 * 7 6 5 32 32 H 1.08002 * 120.04961 * 179.71897 * 8 7 6 33 33 H 1.09003 * 109.46682 * 98.75493 * 13 12 10 34 34 H 1.08998 * 109.47058 * 218.75148 * 13 12 10 35 35 H 1.08999 * 109.47277 * 338.75443 * 13 12 10 36 36 H 0.96997 * 119.99662 * 179.97438 * 17 16 14 37 37 H 1.08002 * 120.04812 * 180.02562 * 22 9 8 38 38 H 1.08002 * 119.94965 * 180.02562 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 8 3.9647 0.5797 -1.2220 6 6 5.3000 0.3991 -1.3840 7 6 6.1792 0.7920 -0.3814 8 6 7.5350 0.6154 -0.5439 9 6 8.0263 0.0294 -1.7143 10 6 9.4774 -0.1677 -1.8899 11 8 10.2556 0.6989 -1.5399 12 7 9.9410 -1.3084 -2.4382 13 6 9.0053 -2.2773 -3.0143 14 6 11.2863 -1.5615 -2.4568 15 1 11.9811 -0.7714 -2.7006 16 6 11.7580 -2.8355 -2.1617 17 7 11.1664 -3.8902 -2.6752 18 14 13.2330 -3.0476 -1.0353 19 1 12.9287 -2.4608 0.2945 20 1 13.5345 -4.4936 -0.8817 21 1 14.4086 -2.3571 -1.6237 22 6 7.1382 -0.3694 -2.7175 23 6 5.7843 -0.1835 -2.5495 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6885 1.8463 0.8900 28 1 1.6885 1.8465 -0.8899 29 1 3.8514 0.5682 0.8409 30 1 3.9785 2.1765 0.0890 31 1 5.7986 1.2406 0.5243 32 1 8.2177 0.9250 0.2335 33 1 8.9678 -2.1473 -4.0959 34 1 9.3397 -3.2882 -2.7812 35 1 8.0122 -2.1172 -2.5944 36 1 11.4958 -4.7791 -2.4696 37 1 7.5135 -0.8228 -3.6230 38 1 5.0975 -0.4917 -3.3239 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171769672.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:18 Heat of formation + Delta-G solvation = -63.951646 kcal Electronic energy + Delta-G solvation = -21146.605932 eV Core-core repulsion = 17763.069866 eV Total energy + Delta-G solvation = -3383.536066 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.09942 -38.78428 -37.93087 -36.43637 -34.65289 -32.04727 -31.33250 -30.53259 -29.27626 -26.65835 -26.27667 -24.76991 -23.68341 -22.43202 -21.50670 -19.40479 -18.21226 -17.11053 -17.04056 -16.40916 -15.93409 -15.80117 -15.28169 -15.03547 -14.74658 -14.24436 -14.23806 -13.77392 -13.37881 -13.20480 -12.82872 -12.77999 -12.37440 -12.15336 -11.93659 -11.59950 -11.53476 -11.46015 -11.27367 -10.85693 -10.64653 -10.51685 -10.35276 -10.13482 -10.02832 -8.65795 -8.57728 -8.45143 -7.80889 -7.61879 -6.61854 -3.85058 1.53450 1.68423 3.15903 3.20508 3.29327 3.37896 3.41265 3.76922 4.10565 4.39620 4.59311 4.69776 4.79740 4.92050 4.97153 5.04125 5.05602 5.07231 5.15271 5.18197 5.35708 5.37006 5.64484 5.67533 5.82455 5.93251 6.32267 6.41419 6.52920 6.63936 6.72062 6.78455 6.93240 6.98777 7.23005 7.56053 7.64924 8.31814 8.54908 9.15809 9.37035 10.03792 10.40968 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.033048 B = 0.003329 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.049898 B = 8409.886467 C = 8616.581689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.063 3.937 4 C 0.060 3.940 5 O -0.309 6.309 6 C 0.127 3.873 7 C -0.217 4.217 8 C -0.040 4.040 9 C -0.130 4.130 10 C 0.490 3.510 11 O -0.583 6.583 12 N -0.435 5.435 13 C 0.042 3.958 14 C -0.349 4.349 15 H 0.096 0.904 16 C 0.075 3.925 17 N -0.824 5.824 18 Si 0.887 3.113 19 H -0.270 1.270 20 H -0.286 1.286 21 H -0.270 1.270 22 C -0.062 4.062 23 C -0.159 4.159 24 H 0.040 0.960 25 H 0.042 0.958 26 H 0.087 0.913 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.125 0.875 32 H 0.129 0.871 33 H 0.035 0.965 34 H 0.116 0.884 35 H 0.050 0.950 36 H 0.273 0.727 37 H 0.141 0.859 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.431 5.585 4.305 20.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C -0.014 4.014 4 C -0.015 4.015 5 O -0.222 6.222 6 C 0.082 3.918 7 C -0.236 4.236 8 C -0.059 4.059 9 C -0.134 4.134 10 C 0.279 3.721 11 O -0.468 6.468 12 N -0.153 5.153 13 C -0.101 4.101 14 C -0.475 4.475 15 H 0.114 0.886 16 C -0.134 4.134 17 N -0.457 5.457 18 Si 0.712 3.288 19 H -0.196 1.196 20 H -0.212 1.212 21 H -0.195 1.195 22 C -0.081 4.081 23 C -0.177 4.177 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.105 0.895 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.143 0.857 32 H 0.147 0.853 33 H 0.053 0.947 34 H 0.133 0.867 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.159 0.841 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -19.071 5.523 4.279 20.310 hybrid contribution 0.454 0.027 0.674 0.813 sum -18.617 5.550 4.953 20.048 Atomic orbital electron populations 1.22756 0.80956 1.02991 0.99863 1.87992 1.19703 1.27128 1.95381 1.22583 0.91778 0.85723 1.01266 1.22804 0.93385 0.98368 0.86988 1.86042 1.20540 1.76998 1.38667 1.19094 0.81824 0.96222 0.94708 1.21064 0.93944 1.08713 0.99833 1.20927 0.94091 0.94445 0.96458 1.20260 0.95160 1.02217 0.95756 1.17974 0.86422 0.84858 0.82815 1.90604 1.57754 1.43001 1.55484 1.43312 1.06602 1.16792 1.48633 1.22949 0.92358 0.98522 0.96247 1.19042 0.81398 0.96728 1.50285 0.88606 1.25510 0.98638 0.94556 0.94718 1.70023 1.41923 0.99706 1.34067 0.86651 0.82362 0.76713 0.83093 1.19566 1.21197 1.19452 1.21499 0.91722 0.95791 0.99113 1.20286 0.95416 1.05013 0.97017 0.94149 0.93962 0.89477 0.91229 0.92099 0.91046 0.90412 0.85699 0.85270 0.94685 0.86675 0.93199 0.91631 0.84146 0.85270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.38 -4.15 10.67 -40.08 -0.43 -4.58 16 3 C 0.06 0.54 6.32 37.16 0.23 0.77 16 4 C 0.06 0.61 5.12 37.16 0.19 0.80 16 5 O -0.31 -4.32 10.09 -23.70 -0.24 -4.56 16 6 C 0.13 1.97 6.70 -39.01 -0.26 1.71 16 7 C -0.22 -3.32 9.01 -39.49 -0.36 -3.68 16 8 C -0.04 -0.74 9.64 -39.20 -0.38 -1.12 16 9 C -0.13 -2.73 5.30 -104.96 -0.56 -3.29 16 10 C 0.49 12.67 7.26 -12.49 -0.09 12.58 16 11 O -0.58 -16.96 16.84 5.26 0.09 -16.87 16 12 N -0.44 -11.52 2.99 -123.40 -0.37 -11.89 16 13 C 0.04 0.96 8.57 59.85 0.51 1.47 16 14 C -0.35 -9.94 8.74 -15.00 -0.13 -10.08 16 15 H 0.10 2.87 7.94 -52.49 -0.42 2.46 16 16 C 0.08 2.01 5.32 -17.45 -0.09 1.92 16 17 N -0.82 -21.48 10.79 55.50 0.60 -20.88 16 18 Si 0.89 20.67 29.69 -169.99 -5.05 15.62 16 19 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 22 C -0.06 -1.13 7.34 -39.20 -0.29 -1.41 16 23 C -0.16 -2.53 9.97 -39.50 -0.39 -2.92 16 24 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 25 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.72 7.64 -51.93 -0.40 0.32 16 30 H 0.08 0.64 7.66 -51.93 -0.40 0.24 16 31 H 0.13 1.51 6.28 -52.49 -0.33 1.19 16 32 H 0.13 2.35 8.06 -52.49 -0.42 1.93 16 33 H 0.03 0.75 7.79 -51.93 -0.40 0.35 16 34 H 0.12 2.83 5.13 -51.93 -0.27 2.57 16 35 H 0.05 1.00 4.58 -51.93 -0.24 0.77 16 36 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 37 H 0.14 2.44 5.74 -52.49 -0.30 2.14 16 38 H 0.13 1.78 8.06 -52.49 -0.42 1.35 16 LS Contribution 320.56 15.07 4.83 4.83 Total: -1.00 -32.88 320.56 -5.91 -38.78 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -4.84 Total: 1.47 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: -0.50 Total: -1.92 kcal Atomic # 7 Polarization: -32.99 SS G_CDS: 0.23 Total: -32.76 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.58 Total: -26.01 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.05 Total: 15.62 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.88 -5.91 -38.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171769672.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.171 kcal (2) G-P(sol) polarization free energy of solvation -32.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds