Wall clock time and date at job start Wed Apr 15 2020 11:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42902 * 113.99966 * 2 1 4 4 C 1.52998 * 109.46985 * 180.02562 * 3 2 1 5 5 O 1.42901 * 109.47152 * 65.00444 * 4 3 2 6 6 C 1.35714 * 117.00012 * 179.97438 * 5 4 3 7 7 C 1.39015 * 119.90478 * 0.29453 * 6 5 4 8 8 C 1.37688 * 120.09217 * 180.25487 * 7 6 5 9 9 C 1.39803 * 119.90626 * 359.45168 * 8 7 6 10 10 C 1.47498 * 120.09307 * 180.29727 * 9 8 7 11 11 O 1.21616 * 119.99770 * 318.98698 * 10 9 8 12 12 N 1.34779 * 119.99564 * 138.99183 * 10 9 8 13 13 C 1.46500 * 120.00142 * 7.76192 * 12 10 9 14 14 C 1.36901 * 119.99604 * 187.76119 * 12 10 9 15 15 H 1.08000 * 120.00276 * 317.83656 * 14 12 10 16 16 C 1.39020 * 119.99981 * 137.83626 * 14 12 10 17 17 N 1.31385 * 119.99791 * 44.08701 * 16 14 12 18 18 Si 1.86797 * 119.99970 * 224.08530 * 16 14 12 19 19 H 1.48501 * 109.47069 * 60.00248 * 18 16 14 20 20 H 1.48506 * 109.46658 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47198 * 299.99844 * 18 16 14 22 22 C 1.39791 * 119.80968 * 0.27376 * 9 8 7 23 23 C 1.37690 * 119.90677 * 0.02562 * 22 9 8 24 24 H 1.09000 * 109.47390 * 299.99540 * 1 2 3 25 25 H 1.09002 * 109.47338 * 60.00085 * 1 2 3 26 26 H 1.09001 * 109.47226 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46602 * 60.00437 * 3 2 1 28 28 H 1.08994 * 109.47482 * 300.00543 * 3 2 1 29 29 H 1.09002 * 109.47381 * 305.00215 * 4 3 2 30 30 H 1.09007 * 109.47179 * 185.00594 * 4 3 2 31 31 H 1.08000 * 119.95654 * 359.97438 * 7 6 5 32 32 H 1.08002 * 120.04961 * 179.71897 * 8 7 6 33 33 H 1.09003 * 109.46682 * 98.75493 * 13 12 10 34 34 H 1.08998 * 109.47058 * 218.75148 * 13 12 10 35 35 H 1.08999 * 109.47277 * 338.75443 * 13 12 10 36 36 H 0.96997 * 119.99662 * 179.97438 * 17 16 14 37 37 H 1.08002 * 120.04812 * 180.02562 * 22 9 8 38 38 H 1.08002 * 119.94965 * 180.02562 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 8 3.9647 0.5797 -1.2220 6 6 5.3000 0.3991 -1.3840 7 6 6.1792 0.7920 -0.3814 8 6 7.5350 0.6154 -0.5439 9 6 8.0263 0.0294 -1.7143 10 6 9.4774 -0.1677 -1.8899 11 8 10.2556 0.6989 -1.5399 12 7 9.9410 -1.3084 -2.4382 13 6 9.0053 -2.2773 -3.0143 14 6 11.2863 -1.5615 -2.4568 15 1 11.9811 -0.7714 -2.7006 16 6 11.7580 -2.8355 -2.1617 17 7 11.1664 -3.8902 -2.6752 18 14 13.2330 -3.0476 -1.0353 19 1 12.9287 -2.4608 0.2945 20 1 13.5345 -4.4936 -0.8817 21 1 14.4086 -2.3571 -1.6237 22 6 7.1382 -0.3694 -2.7175 23 6 5.7843 -0.1835 -2.5495 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6885 1.8463 0.8900 28 1 1.6885 1.8465 -0.8899 29 1 3.8514 0.5682 0.8409 30 1 3.9785 2.1765 0.0890 31 1 5.7986 1.2406 0.5243 32 1 8.2177 0.9250 0.2335 33 1 8.9678 -2.1473 -4.0959 34 1 9.3397 -3.2882 -2.7812 35 1 8.0122 -2.1172 -2.5944 36 1 11.4958 -4.7791 -2.4696 37 1 7.5135 -0.8228 -3.6230 38 1 5.0975 -0.4917 -3.3239 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171769672.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:18 Heat of formation + Delta-G solvation = -85.847499 kcal Electronic energy + Delta-G solvation = -21147.555408 eV Core-core repulsion = 17763.069866 eV Total energy + Delta-G solvation = -3384.485542 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.41142 -40.31411 -38.81148 -37.77155 -36.69141 -34.02187 -32.38109 -31.83405 -30.52166 -28.17038 -27.25460 -26.61417 -24.66552 -23.96315 -22.62193 -21.13435 -19.38136 -19.00088 -18.05665 -17.78597 -17.06316 -16.91282 -16.54318 -16.26168 -16.06528 -15.98043 -15.78617 -15.21675 -14.97545 -14.46522 -14.20937 -14.02795 -13.80289 -13.42267 -13.30340 -13.24865 -13.01442 -12.68999 -12.51824 -12.28422 -12.23857 -12.10735 -11.74130 -11.69855 -10.63812 -10.61095 -10.48086 -10.01121 -9.64142 -9.16523 -8.64826 -5.97074 0.12174 0.35591 1.31232 1.40261 1.49571 2.06507 2.16237 2.20668 2.65043 2.81281 2.84925 3.17537 3.77925 3.86195 3.98707 4.08159 4.14439 4.26467 4.36486 4.38258 4.50498 4.54623 4.57039 4.60492 4.69439 4.76834 4.88308 4.89690 5.03159 5.18504 5.24967 5.28622 5.52150 5.63407 5.66509 6.18490 6.21611 6.42224 6.53875 7.10347 7.37661 8.03308 8.38107 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.033048 B = 0.003329 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.049898 B = 8409.886467 C = 8616.581689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.418 6.418 3 C 0.061 3.939 4 C 0.046 3.954 5 O -0.315 6.315 6 C 0.141 3.859 7 C -0.205 4.205 8 C -0.047 4.047 9 C -0.165 4.165 10 C 0.481 3.519 11 O -0.632 6.632 12 N -0.449 5.449 13 C 0.050 3.950 14 C -0.398 4.398 15 H 0.063 0.937 16 C 0.050 3.950 17 N -0.830 5.830 18 Si 0.949 3.051 19 H -0.283 1.283 20 H -0.261 1.261 21 H -0.268 1.268 22 C -0.061 4.061 23 C -0.156 4.156 24 H 0.057 0.943 25 H 0.049 0.951 26 H 0.090 0.910 27 H 0.100 0.900 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.102 0.898 31 H 0.162 0.838 32 H 0.122 0.878 33 H 0.042 0.958 34 H 0.100 0.900 35 H 0.077 0.923 36 H 0.284 0.716 37 H 0.142 0.858 38 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.010 5.402 5.312 23.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.338 6.338 3 C -0.015 4.015 4 C -0.028 4.028 5 O -0.229 6.229 6 C 0.095 3.905 7 C -0.223 4.223 8 C -0.067 4.067 9 C -0.169 4.169 10 C 0.272 3.728 11 O -0.521 6.521 12 N -0.166 5.166 13 C -0.092 4.092 14 C -0.523 4.523 15 H 0.081 0.919 16 C -0.160 4.160 17 N -0.462 5.462 18 Si 0.772 3.228 19 H -0.209 1.209 20 H -0.186 1.186 21 H -0.193 1.193 22 C -0.080 4.080 23 C -0.174 4.174 24 H 0.076 0.924 25 H 0.068 0.932 26 H 0.108 0.892 27 H 0.118 0.882 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.120 0.880 31 H 0.179 0.821 32 H 0.140 0.860 33 H 0.060 0.940 34 H 0.118 0.882 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.160 0.840 38 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -21.683 5.306 5.269 22.936 hybrid contribution 1.044 0.127 0.380 1.119 sum -20.639 5.433 5.649 22.077 Atomic orbital electron populations 1.22912 0.79366 1.03678 1.01058 1.87933 1.21611 1.28586 1.95674 1.22735 0.90460 0.85281 1.02994 1.23235 0.94822 0.99364 0.85392 1.86066 1.19128 1.76935 1.40739 1.19210 0.82781 0.94372 0.94131 1.21307 0.92259 1.07629 1.01104 1.20978 0.95593 0.94479 0.95616 1.19964 0.92417 1.06151 0.98326 1.18768 0.88517 0.83933 0.81558 1.90537 1.59762 1.44467 1.57329 1.43508 1.06500 1.17572 1.49052 1.22909 0.92906 0.96749 0.96679 1.18881 0.82393 0.96749 1.54320 0.91934 1.26058 1.01409 0.93880 0.94648 1.70012 1.42735 1.00122 1.33343 0.85730 0.79338 0.77746 0.80022 1.20925 1.18568 1.19297 1.21442 0.92352 0.95803 0.98401 1.20504 0.94646 1.04309 0.97977 0.92428 0.93250 0.89196 0.88181 0.91602 0.90727 0.88001 0.82090 0.85960 0.93972 0.88238 0.90513 0.90521 0.84014 0.82729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.42 -7.93 10.67 -144.34 -1.54 -9.47 16 3 C 0.06 0.83 6.32 71.98 0.45 1.28 16 4 C 0.05 0.76 5.12 71.98 0.37 1.13 16 5 O -0.32 -7.70 10.09 -85.72 -0.86 -8.57 16 6 C 0.14 3.95 6.70 22.64 0.15 4.10 16 7 C -0.20 -5.73 9.01 22.33 0.20 -5.53 16 8 C -0.05 -1.73 9.64 22.52 0.22 -1.51 16 9 C -0.17 -7.01 5.30 -20.08 -0.11 -7.11 16 10 C 0.48 26.01 7.26 86.68 0.63 26.64 16 11 O -0.63 -38.96 16.84 -4.08 -0.07 -39.03 16 12 N -0.45 -24.72 2.99 -662.57 -1.98 -26.70 16 13 C 0.05 2.30 8.57 127.77 1.10 3.39 16 14 C -0.40 -23.75 8.74 84.09 0.74 -23.02 16 15 H 0.06 4.04 7.94 -2.91 -0.02 4.01 16 16 C 0.05 2.72 5.32 84.95 0.45 3.17 16 17 N -0.83 -43.26 10.79 21.68 0.23 -43.02 16 18 Si 0.95 43.03 29.69 68.60 2.04 45.07 16 19 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 20 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 21 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 22 C -0.06 -2.16 7.34 22.52 0.17 -2.00 16 23 C -0.16 -4.58 9.97 22.32 0.22 -4.36 16 24 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 25 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 26 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.07 1.21 7.64 -2.39 -0.02 1.19 16 30 H 0.10 1.21 7.66 -2.38 -0.02 1.19 16 31 H 0.16 3.26 6.28 -2.91 -0.02 3.25 16 32 H 0.12 4.54 8.06 -2.91 -0.02 4.52 16 33 H 0.04 1.84 7.79 -2.39 -0.02 1.82 16 34 H 0.10 4.95 5.13 -2.39 -0.01 4.93 16 35 H 0.08 3.09 4.58 -2.39 -0.01 3.08 16 36 H 0.28 13.50 8.31 -92.71 -0.77 12.73 16 37 H 0.14 4.87 5.74 -2.91 -0.02 4.85 16 38 H 0.16 3.73 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -74.14 320.56 4.72 -69.42 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 1.07 Total: 14.54 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: 5.83 Total: -2.26 kcal Atomic # 7 Polarization: -67.97 SS G_CDS: -1.75 Total: -69.72 kcal Atomic # 8 Polarization: -54.59 SS G_CDS: -2.47 Total: -57.06 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.04 Total: 45.07 kcal Total: -74.14 4.72 -69.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171769672.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.423 kcal (2) G-P(sol) polarization free energy of solvation -74.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds