Wall clock time and date at job start Wed Apr 15 2020 11:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34747 * 117.00035 * 2 1 4 4 O 1.21517 * 119.99900 * 359.97438 * 3 2 1 5 5 C 1.47394 * 119.99885 * 179.97438 * 3 2 1 6 6 C 1.39774 * 120.19854 * 359.97438 * 5 3 2 7 7 C 1.37765 * 119.89981 * 179.97438 * 6 5 3 8 8 C 1.38562 * 120.31140 * 0.02562 * 7 6 5 9 9 C 1.38047 * 120.40202 * 0.02562 * 8 7 6 10 10 C 1.38709 * 120.09509 * 359.96943 * 9 8 7 11 11 O 1.35633 * 120.16188 * 180.02562 * 10 9 8 12 12 C 1.42907 * 116.99618 * 0.02562 * 11 10 9 13 13 C 1.52999 * 109.46863 * 180.02562 * 12 11 10 14 14 N 1.46491 * 109.47517 * 64.99913 * 13 12 11 15 15 C 1.46503 * 120.00020 * 89.99851 * 14 13 12 16 16 C 1.36936 * 120.00307 * 270.00041 * 14 13 12 17 17 H 1.08007 * 119.99727 * 22.56831 * 16 14 13 18 18 C 1.38814 * 120.00314 * 202.57308 * 16 14 13 19 19 N 1.31617 * 119.99702 * 13.56472 * 18 16 14 20 20 Si 1.86802 * 119.99875 * 193.56937 * 18 16 14 21 21 H 1.48504 * 109.47320 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47034 * 119.99784 * 20 18 16 23 23 H 1.48500 * 109.47068 * 239.99560 * 20 18 16 24 24 H 1.09000 * 109.46939 * 60.00146 * 1 2 3 25 25 H 1.09000 * 109.47157 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47553 * 300.00294 * 1 2 3 27 27 H 1.07996 * 120.05108 * 0.26083 * 6 5 3 28 28 H 1.08005 * 119.83802 * 179.97438 * 7 6 5 29 29 H 1.08002 * 119.79940 * 179.97438 * 8 7 6 30 30 H 1.08002 * 119.95477 * 180.02562 * 9 8 7 31 31 H 1.08997 * 109.47188 * 299.99685 * 12 11 10 32 32 H 1.09001 * 109.47227 * 60.00033 * 12 11 10 33 33 H 1.08997 * 109.46850 * 184.99987 * 13 12 11 34 34 H 1.08999 * 109.46965 * 304.99628 * 13 12 11 35 35 H 1.08994 * 109.47135 * 95.13226 * 15 14 13 36 36 H 1.09004 * 109.46836 * 215.13547 * 15 14 13 37 37 H 1.08997 * 109.47118 * 335.13256 * 15 14 13 38 38 H 0.97007 * 119.99404 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4019 2.2197 -0.0005 5 6 3.5357 1.2777 0.0006 6 6 4.3010 0.1081 0.0017 7 6 5.6763 0.1873 0.0016 8 6 6.3057 1.4218 0.0011 9 6 5.5623 2.5850 0.0011 10 6 4.1765 2.5247 0.0010 11 8 3.4447 3.6667 0.0005 12 6 4.1669 4.8999 -0.0005 13 6 3.1798 6.0689 -0.0004 14 7 2.4196 6.0660 1.2518 15 6 2.9183 6.8066 2.4133 16 6 1.2427 5.3710 1.3368 17 1 1.0474 4.5546 0.6572 18 6 0.3007 5.7158 2.2964 19 7 0.4066 6.8579 2.9419 20 14 -1.1170 4.5587 2.6715 21 1 -1.0094 3.3501 1.8152 22 1 -1.0651 4.1594 4.1009 23 1 -2.4038 5.2469 2.3961 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 3.8149 -0.8563 -0.0022 28 1 6.2667 -0.7171 0.0029 29 1 7.3844 1.4742 0.0015 30 1 6.0603 3.5433 0.0003 31 1 4.7941 4.9544 0.8892 32 1 4.7936 4.9532 -0.8907 33 1 3.7275 7.0069 -0.0907 34 1 2.4945 5.9658 -0.8417 35 1 2.4563 7.7934 2.4408 36 1 2.6694 6.2633 3.3249 37 1 4.0004 6.9140 2.3384 38 1 -0.2515 7.0986 3.6127 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182121726.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:37 Heat of formation + Delta-G solvation = -62.475045 kcal Electronic energy + Delta-G solvation = -22390.387446 eV Core-core repulsion = 19006.915410 eV Total energy + Delta-G solvation = -3383.472036 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.40297 -39.19582 -37.28351 -35.88906 -35.23845 -31.68629 -31.32976 -29.87421 -28.38045 -27.40017 -25.70830 -24.04844 -23.56803 -21.91451 -20.73328 -20.09876 -18.18877 -17.18470 -16.57868 -16.45577 -16.02898 -15.46238 -15.30019 -14.87406 -14.44611 -14.38423 -13.45133 -13.34682 -13.14505 -13.05941 -12.82644 -12.29516 -12.19194 -11.97206 -11.58702 -11.39899 -11.12236 -11.00295 -10.75559 -10.57408 -10.43974 -10.35263 -10.18656 -9.93207 -9.70551 -9.54780 -9.03467 -8.35887 -8.03331 -6.61070 -5.53228 -2.97039 0.89604 1.51310 2.92350 2.99818 3.50539 3.57622 3.60971 3.68478 3.92406 4.69906 4.80539 4.86849 5.04073 5.25856 5.30761 5.37864 5.40719 5.43913 5.56705 5.59632 5.70564 5.73397 5.87520 5.99375 6.02529 6.22650 6.29885 6.35713 6.44097 6.70764 6.74201 6.77921 6.81824 7.44207 7.79849 7.81308 8.12549 8.34338 8.61062 9.46262 10.05455 10.51580 11.53371 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.014878 B = 0.007406 C = 0.005284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.496315 B = 3780.006175 C = 5297.476896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.368 6.368 3 C 0.492 3.508 4 O -0.454 6.454 5 C -0.168 4.168 6 C -0.027 4.027 7 C -0.189 4.189 8 C -0.046 4.046 9 C -0.230 4.230 10 C 0.203 3.797 11 O -0.250 6.250 12 C 0.031 3.969 13 C 0.150 3.850 14 N -0.596 5.596 15 C 0.161 3.839 16 C -0.230 4.230 17 H 0.091 0.909 18 C -0.008 4.008 19 N -0.920 5.920 20 Si 0.896 3.104 21 H -0.271 1.271 22 H -0.294 1.294 23 H -0.294 1.294 24 H 0.061 0.939 25 H 0.096 0.904 26 H 0.063 0.937 27 H 0.138 0.862 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.135 0.865 31 H 0.055 0.945 32 H 0.048 0.952 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.032 0.968 36 H 0.041 0.959 37 H -0.006 1.006 38 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.646 -12.912 -7.143 18.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.286 6.286 3 C 0.334 3.666 4 O -0.338 6.338 5 C -0.170 4.170 6 C -0.045 4.045 7 C -0.207 4.207 8 C -0.064 4.064 9 C -0.249 4.249 10 C 0.153 3.847 11 O -0.159 6.159 12 C -0.048 4.048 13 C 0.021 3.979 14 N -0.318 5.318 15 C 0.016 3.984 16 C -0.360 4.360 17 H 0.108 0.892 18 C -0.204 4.204 19 N -0.567 5.567 20 Si 0.727 3.273 21 H -0.196 1.196 22 H -0.222 1.222 23 H -0.222 1.222 24 H 0.080 0.920 25 H 0.114 0.886 26 H 0.082 0.918 27 H 0.156 0.844 28 H 0.144 0.856 29 H 0.144 0.856 30 H 0.153 0.847 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.051 0.949 36 H 0.059 0.941 37 H 0.012 0.988 38 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 10.041 -12.450 -7.001 17.459 hybrid contribution -0.662 -0.449 0.470 0.928 sum 9.378 -12.899 -6.531 17.233 Atomic orbital electron populations 1.23184 0.76500 1.02911 1.02907 1.86467 1.23117 1.33433 1.85592 1.20934 0.88843 0.81755 0.75066 1.91056 1.65820 1.34867 1.42094 1.18446 0.89720 0.92000 1.16831 1.21254 0.93662 0.97041 0.92528 1.20908 0.94250 0.97801 1.07733 1.21133 0.99784 0.91938 0.93542 1.21256 0.92329 1.00132 1.11164 1.19301 0.89993 0.87097 0.88313 1.86586 1.33712 1.11525 1.84097 1.24186 0.97173 0.84198 0.99215 1.20786 0.93598 0.92086 0.91408 1.43959 1.23070 1.58329 1.06425 1.20825 0.90910 0.96764 0.89892 1.19684 0.92052 1.08428 1.15793 0.89178 1.24982 0.97890 0.96426 1.01100 1.70094 1.36789 1.20904 1.28897 0.86242 0.82224 0.81232 0.77595 1.19605 1.22170 1.22173 0.92024 0.88556 0.91833 0.84405 0.85570 0.85623 0.84717 0.92661 0.93375 0.92091 0.92201 0.94935 0.94050 0.98757 0.94301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.57 101.05 1.07 1.60 16 2 O -0.37 -5.88 9.82 -40.62 -0.40 -6.28 16 3 C 0.49 9.40 7.89 34.46 0.27 9.67 16 4 O -0.45 -10.64 13.84 -26.60 -0.37 -11.01 16 5 C -0.17 -2.85 5.89 -104.86 -0.62 -3.47 16 6 C -0.03 -0.35 9.61 -39.18 -0.38 -0.72 16 7 C -0.19 -2.07 10.02 -39.63 -0.40 -2.47 16 8 C -0.05 -0.51 10.03 -39.53 -0.40 -0.91 16 9 C -0.23 -3.19 9.03 -39.48 -0.36 -3.55 16 10 C 0.20 3.58 6.70 -38.67 -0.26 3.32 16 11 O -0.25 -5.21 7.45 -40.48 -0.30 -5.51 16 12 C 0.03 0.55 5.08 37.16 0.19 0.74 16 13 C 0.15 3.14 6.07 -4.05 -0.02 3.11 16 14 N -0.60 -15.65 2.90 -181.13 -0.53 -16.17 16 15 C 0.16 4.09 8.98 59.85 0.54 4.63 16 16 C -0.23 -6.78 9.21 -15.06 -0.14 -6.92 16 17 H 0.09 2.76 6.45 -52.48 -0.34 2.42 16 18 C -0.01 -0.24 5.09 -17.43 -0.09 -0.33 16 19 N -0.92 -28.40 10.72 55.49 0.59 -27.80 16 20 Si 0.90 23.95 29.57 -169.99 -5.03 18.93 16 21 H -0.27 -7.23 7.11 56.52 0.40 -6.83 16 22 H -0.29 -7.85 7.11 56.52 0.40 -7.45 16 23 H -0.29 -7.81 7.11 56.52 0.40 -7.41 16 24 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.14 1.50 7.61 -52.49 -0.40 1.10 16 28 H 0.13 1.01 8.06 -52.48 -0.42 0.58 16 29 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 30 H 0.14 1.65 6.30 -52.49 -0.33 1.32 16 31 H 0.06 0.97 7.66 -51.93 -0.40 0.57 16 32 H 0.05 0.69 7.66 -51.93 -0.40 0.30 16 33 H 0.06 1.11 8.07 -51.93 -0.42 0.69 16 34 H 0.06 1.30 8.04 -51.93 -0.42 0.88 16 35 H 0.03 0.89 7.35 -51.93 -0.38 0.51 16 36 H 0.04 1.14 7.33 -51.93 -0.38 0.76 16 37 H -0.01 -0.13 8.03 -51.93 -0.42 -0.55 16 38 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 323.12 15.07 4.87 4.87 Total: -1.00 -35.38 323.12 -6.87 -42.25 By element: Atomic # 1 Polarization: 1.15 SS G_CDS: -5.13 Total: -3.97 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: -0.59 Total: 4.71 kcal Atomic # 7 Polarization: -44.05 SS G_CDS: 0.07 Total: -43.98 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -1.07 Total: -22.81 kcal Atomic # 14 Polarization: 23.95 SS G_CDS: -5.03 Total: 18.93 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -35.38 -6.87 -42.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182121726.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.223 kcal (2) G-P(sol) polarization free energy of solvation -35.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds