Wall clock time and date at job start Wed Apr 15 2020 11:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34747 * 117.00035 * 2 1 4 4 O 1.21517 * 119.99900 * 359.97438 * 3 2 1 5 5 C 1.47394 * 119.99885 * 179.97438 * 3 2 1 6 6 C 1.39774 * 120.19854 * 359.97438 * 5 3 2 7 7 C 1.37765 * 119.89981 * 179.97438 * 6 5 3 8 8 C 1.38562 * 120.31140 * 0.02562 * 7 6 5 9 9 C 1.38047 * 120.40202 * 0.02562 * 8 7 6 10 10 C 1.38709 * 120.09509 * 359.96943 * 9 8 7 11 11 O 1.35633 * 120.16188 * 180.02562 * 10 9 8 12 12 C 1.42907 * 116.99618 * 0.02562 * 11 10 9 13 13 C 1.52999 * 109.46863 * 180.02562 * 12 11 10 14 14 N 1.46491 * 109.47517 * 64.99913 * 13 12 11 15 15 C 1.46503 * 120.00020 * 89.99851 * 14 13 12 16 16 C 1.36936 * 120.00307 * 270.00041 * 14 13 12 17 17 H 1.08007 * 119.99727 * 22.56831 * 16 14 13 18 18 C 1.38814 * 120.00314 * 202.57308 * 16 14 13 19 19 N 1.31617 * 119.99702 * 13.56472 * 18 16 14 20 20 Si 1.86802 * 119.99875 * 193.56937 * 18 16 14 21 21 H 1.48504 * 109.47320 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47034 * 119.99784 * 20 18 16 23 23 H 1.48500 * 109.47068 * 239.99560 * 20 18 16 24 24 H 1.09000 * 109.46939 * 60.00146 * 1 2 3 25 25 H 1.09000 * 109.47157 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47553 * 300.00294 * 1 2 3 27 27 H 1.07996 * 120.05108 * 0.26083 * 6 5 3 28 28 H 1.08005 * 119.83802 * 179.97438 * 7 6 5 29 29 H 1.08002 * 119.79940 * 179.97438 * 8 7 6 30 30 H 1.08002 * 119.95477 * 180.02562 * 9 8 7 31 31 H 1.08997 * 109.47188 * 299.99685 * 12 11 10 32 32 H 1.09001 * 109.47227 * 60.00033 * 12 11 10 33 33 H 1.08997 * 109.46850 * 184.99987 * 13 12 11 34 34 H 1.08999 * 109.46965 * 304.99628 * 13 12 11 35 35 H 1.08994 * 109.47135 * 95.13226 * 15 14 13 36 36 H 1.09004 * 109.46836 * 215.13547 * 15 14 13 37 37 H 1.08997 * 109.47118 * 335.13256 * 15 14 13 38 38 H 0.97007 * 119.99404 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4019 2.2197 -0.0005 5 6 3.5357 1.2777 0.0006 6 6 4.3010 0.1081 0.0017 7 6 5.6763 0.1873 0.0016 8 6 6.3057 1.4218 0.0011 9 6 5.5623 2.5850 0.0011 10 6 4.1765 2.5247 0.0010 11 8 3.4447 3.6667 0.0005 12 6 4.1669 4.8999 -0.0005 13 6 3.1798 6.0689 -0.0004 14 7 2.4196 6.0660 1.2518 15 6 2.9183 6.8066 2.4133 16 6 1.2427 5.3710 1.3368 17 1 1.0474 4.5546 0.6572 18 6 0.3007 5.7158 2.2964 19 7 0.4066 6.8579 2.9419 20 14 -1.1170 4.5587 2.6715 21 1 -1.0094 3.3501 1.8152 22 1 -1.0651 4.1594 4.1009 23 1 -2.4038 5.2469 2.3961 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 3.8149 -0.8563 -0.0022 28 1 6.2667 -0.7171 0.0029 29 1 7.3844 1.4742 0.0015 30 1 6.0603 3.5433 0.0003 31 1 4.7941 4.9544 0.8892 32 1 4.7936 4.9532 -0.8907 33 1 3.7275 7.0069 -0.0907 34 1 2.4945 5.9658 -0.8417 35 1 2.4563 7.7934 2.4408 36 1 2.6694 6.2633 3.3249 37 1 4.0004 6.9140 2.3384 38 1 -0.2515 7.0986 3.6127 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182121726.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:36 Heat of formation + Delta-G solvation = -84.787135 kcal Electronic energy + Delta-G solvation = -22391.354971 eV Core-core repulsion = 19006.915410 eV Total energy + Delta-G solvation = -3384.439561 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.67387 -40.50999 -38.53621 -37.33917 -37.11900 -33.56865 -32.57521 -31.15193 -29.96422 -28.57885 -27.86828 -25.51994 -24.91138 -23.35720 -22.03840 -21.69929 -19.41046 -18.69716 -18.44023 -17.77493 -17.42639 -17.07624 -16.56650 -16.35116 -15.84813 -15.52606 -15.35197 -14.95219 -14.72961 -14.34470 -14.32987 -13.88850 -13.48859 -13.12921 -13.03212 -12.94119 -12.85013 -12.67290 -12.45576 -12.35776 -12.13235 -11.92693 -11.81529 -11.74233 -11.57775 -11.27858 -10.60986 -10.07377 -9.17168 -8.74718 -7.79775 -5.24071 -0.20902 0.47836 1.34635 1.35634 1.53086 1.64233 1.76799 2.36459 2.52334 2.83761 3.33512 3.68156 3.76381 3.88660 4.01962 4.23765 4.26375 4.28028 4.31134 4.43107 4.46289 4.48445 4.53414 4.64376 4.80309 4.82647 4.93612 5.07443 5.22042 5.30439 5.34360 5.42501 5.49451 5.69879 5.84299 5.87647 6.40689 6.59000 6.88606 7.23385 7.92521 8.31395 9.24130 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.014878 B = 0.007406 C = 0.005284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.496315 B = 3780.006175 C = 5297.476896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.359 6.359 3 C 0.488 3.512 4 O -0.513 6.513 5 C -0.202 4.202 6 C -0.024 4.024 7 C -0.173 4.173 8 C -0.032 4.032 9 C -0.233 4.233 10 C 0.168 3.832 11 O -0.295 6.295 12 C 0.039 3.961 13 C 0.144 3.856 14 N -0.614 5.614 15 C 0.175 3.825 16 C -0.223 4.223 17 H 0.073 0.927 18 C -0.062 4.062 19 N -0.945 5.945 20 Si 0.948 3.052 21 H -0.278 1.278 22 H -0.292 1.292 23 H -0.289 1.289 24 H 0.056 0.944 25 H 0.145 0.855 26 H 0.040 0.960 27 H 0.157 0.843 28 H 0.169 0.831 29 H 0.169 0.831 30 H 0.150 0.850 31 H 0.060 0.940 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.042 0.958 35 H 0.008 0.992 36 H 0.008 0.992 37 H 0.038 0.962 38 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.720 -15.132 -7.880 21.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.276 6.276 3 C 0.333 3.667 4 O -0.402 6.402 5 C -0.204 4.204 6 C -0.042 4.042 7 C -0.191 4.191 8 C -0.049 4.049 9 C -0.252 4.252 10 C 0.119 3.881 11 O -0.206 6.206 12 C -0.038 4.038 13 C 0.018 3.982 14 N -0.337 5.337 15 C 0.031 3.969 16 C -0.354 4.354 17 H 0.091 0.909 18 C -0.255 4.255 19 N -0.594 5.594 20 Si 0.779 3.221 21 H -0.203 1.203 22 H -0.219 1.219 23 H -0.216 1.216 24 H 0.075 0.925 25 H 0.163 0.837 26 H 0.059 0.941 27 H 0.174 0.826 28 H 0.186 0.814 29 H 0.187 0.813 30 H 0.168 0.832 31 H 0.078 0.922 32 H 0.106 0.894 33 H 0.110 0.890 34 H 0.061 0.939 35 H 0.027 0.973 36 H 0.026 0.974 37 H 0.057 0.943 38 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 13.155 -14.713 -7.770 21.211 hybrid contribution -1.468 0.082 0.598 1.587 sum 11.687 -14.631 -7.172 20.052 Atomic orbital electron populations 1.23449 0.75354 1.05599 1.01588 1.86467 1.24260 1.31981 1.84929 1.21581 0.90041 0.81598 0.73437 1.91021 1.67207 1.36689 1.45277 1.18701 0.88692 0.93549 1.19415 1.21540 0.94698 0.96315 0.91695 1.21434 0.93421 0.99486 1.04739 1.21673 1.01791 0.90866 0.90617 1.21511 0.90701 1.02137 1.10845 1.19684 0.91589 0.86186 0.90619 1.86504 1.35737 1.12924 1.85445 1.23899 0.95937 0.82645 1.01286 1.21050 0.93686 0.95068 0.88433 1.44150 1.22831 1.58171 1.08547 1.20567 0.93171 0.94693 0.88507 1.19710 0.93087 1.07809 1.14787 0.90900 1.25569 1.00247 0.97864 1.01850 1.70216 1.37554 1.22009 1.29641 0.85431 0.80201 0.79439 0.77078 1.20323 1.21943 1.21593 0.92526 0.83734 0.94078 0.82565 0.81392 0.81349 0.83233 0.92201 0.89386 0.88952 0.93910 0.97338 0.97351 0.94348 0.94748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.92 10.57 113.37 1.20 2.12 16 2 O -0.36 -11.53 9.82 -56.57 -0.56 -12.08 16 3 C 0.49 19.32 7.89 70.23 0.55 19.88 16 4 O -0.51 -25.57 13.84 26.78 0.37 -25.20 16 5 C -0.20 -6.79 5.89 -20.02 -0.12 -6.91 16 6 C -0.02 -0.57 9.61 22.53 0.22 -0.35 16 7 C -0.17 -2.93 10.02 22.24 0.22 -2.71 16 8 C -0.03 -0.55 10.03 22.30 0.22 -0.33 16 9 C -0.23 -5.78 9.03 22.34 0.20 -5.57 16 10 C 0.17 5.83 6.70 22.86 0.15 5.99 16 11 O -0.30 -12.51 7.45 -68.54 -0.51 -13.02 16 12 C 0.04 1.38 5.08 71.98 0.37 1.74 16 13 C 0.14 5.99 6.07 86.38 0.52 6.51 16 14 N -0.61 -32.83 2.90 -726.96 -2.11 -34.94 16 15 C 0.18 9.02 8.98 127.77 1.15 10.17 16 16 C -0.22 -13.65 9.21 84.03 0.77 -12.88 16 17 H 0.07 4.70 6.45 -2.91 -0.02 4.69 16 18 C -0.06 -3.88 5.09 84.86 0.43 -3.45 16 19 N -0.94 -60.22 10.72 21.65 0.23 -59.99 16 20 Si 0.95 51.37 29.57 68.60 2.03 53.40 16 21 H -0.28 -15.21 7.11 99.48 0.71 -14.50 16 22 H -0.29 -15.56 7.11 99.48 0.71 -14.85 16 23 H -0.29 -15.23 7.11 99.48 0.71 -14.52 16 24 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.14 2.49 8.14 -2.39 -0.02 2.47 16 26 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.16 2.94 7.61 -2.91 -0.02 2.92 16 28 H 0.17 1.52 8.06 -2.91 -0.02 1.49 16 29 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 30 H 0.15 3.14 6.30 -2.91 -0.02 3.12 16 31 H 0.06 1.99 7.66 -2.39 -0.02 1.98 16 32 H 0.09 2.31 7.66 -2.39 -0.02 2.29 16 33 H 0.09 3.20 8.07 -2.39 -0.02 3.18 16 34 H 0.04 1.90 8.04 -2.39 -0.02 1.88 16 35 H 0.01 0.47 7.35 -2.39 -0.02 0.45 16 36 H 0.01 0.44 7.33 -2.38 -0.02 0.42 16 37 H 0.04 1.60 8.03 -2.39 -0.02 1.58 16 38 H 0.24 15.06 8.31 -92.70 -0.77 14.29 16 Total: -1.00 -82.76 323.12 6.41 -76.36 By element: Atomic # 1 Polarization: 0.21 SS G_CDS: 1.06 Total: 1.27 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: 5.89 Total: 14.21 kcal Atomic # 7 Polarization: -93.05 SS G_CDS: -1.88 Total: -94.92 kcal Atomic # 8 Polarization: -49.61 SS G_CDS: -0.70 Total: -50.31 kcal Atomic # 14 Polarization: 51.37 SS G_CDS: 2.03 Total: 53.40 kcal Total: -82.76 6.41 -76.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182121726.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.432 kcal (2) G-P(sol) polarization free energy of solvation -82.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds