Wall clock time and date at job start Wed Apr 15 2020 11:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35997 * 116.99678 * 2 1 4 4 C 1.38570 * 120.07484 * 359.97036 * 3 2 1 5 5 C 1.38239 * 120.00100 * 180.02562 * 4 3 2 6 6 C 1.38246 * 120.14776 * 359.97438 * 5 4 3 7 7 C 1.38251 * 120.14612 * 0.04756 * 6 5 4 8 8 C 1.50702 * 119.99984 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.46845 * 264.97279 * 8 7 6 10 10 O 1.21300 * 120.00136 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99891 * 179.97438 * 9 8 7 12 12 C 1.46498 * 120.00031 * 0.02562 * 11 9 8 13 13 C 1.37101 * 119.99638 * 179.97438 * 11 9 8 14 14 H 1.07999 * 120.00402 * 322.83136 * 13 11 9 15 15 C 1.38954 * 119.99545 * 142.83057 * 13 11 9 16 16 N 1.31413 * 119.99912 * 158.40362 * 15 13 11 17 17 Si 1.86796 * 119.99876 * 338.41048 * 15 13 11 18 18 H 1.48500 * 109.47449 * 95.72347 * 17 15 13 19 19 H 1.48499 * 109.47110 * 215.71733 * 17 15 13 20 20 H 1.48494 * 109.47262 * 335.71818 * 17 15 13 21 21 C 1.38560 * 119.99839 * 359.95009 * 7 6 5 22 22 O 1.35995 * 120.07283 * 180.29610 * 21 7 6 23 23 C 1.42897 * 117.00281 * 269.72626 * 22 21 7 24 24 H 1.09003 * 109.47220 * 60.00445 * 1 2 3 25 25 H 1.09006 * 109.46889 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47205 * 300.00095 * 1 2 3 27 27 H 1.08006 * 119.99701 * 0.02562 * 4 3 2 28 28 H 1.07997 * 119.92869 * 180.02562 * 5 4 3 29 29 H 1.08002 * 119.93339 * 180.02562 * 6 5 4 30 30 H 1.08998 * 109.47163 * 24.97131 * 8 7 6 31 31 H 1.09000 * 109.46708 * 144.97782 * 8 7 6 32 32 H 1.09003 * 109.47137 * 85.13233 * 12 11 9 33 33 H 1.08995 * 109.46897 * 205.13084 * 12 11 9 34 34 H 1.08994 * 109.47164 * 325.13217 * 12 11 9 35 35 H 0.96998 * 119.99894 * 180.02562 * 16 15 13 36 36 H 1.08999 * 109.47307 * 299.99877 * 23 22 21 37 37 H 1.09005 * 109.47146 * 60.00388 * 23 22 21 38 38 H 1.08997 * 109.47143 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2931 2.3749 -0.0006 5 6 1.9222 3.6058 -0.0012 6 6 3.3027 3.6800 -0.0005 7 6 4.0602 2.5235 -0.0004 8 6 5.5648 2.6082 -0.0003 9 6 6.0734 2.5120 -1.4156 10 8 5.2909 2.3874 -2.3341 11 7 7.3976 2.5655 -1.6609 12 6 8.3425 2.7165 -0.5517 13 6 7.8602 2.4774 -2.9485 14 1 7.3741 1.8190 -3.6532 15 6 8.9546 3.2354 -3.3468 16 7 9.6600 2.8711 -4.3940 17 14 9.4233 4.7719 -2.3935 18 1 10.4813 4.4385 -1.4062 19 1 9.9314 5.8024 -3.3343 20 1 8.2299 5.2963 -1.6822 21 6 3.4359 1.2865 0.0002 22 8 4.1795 0.1479 0.0065 23 6 4.5347 -0.4020 -1.2637 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.2145 2.3196 -0.0007 28 1 1.3340 4.5115 -0.0012 29 1 3.7906 4.6435 -0.0005 30 1 5.8752 3.5588 0.4335 31 1 5.9748 1.7884 0.5896 32 1 8.5682 1.7368 -0.1306 33 1 9.2613 3.1753 -0.9170 34 1 7.9013 3.3499 0.2178 35 1 10.4242 3.4000 -4.6718 36 1 3.6297 -0.6465 -1.8198 37 1 5.1200 0.3269 -1.8244 38 1 5.1259 -1.3057 -1.1159 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259587568.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:39 Heat of formation + Delta-G solvation = -62.075450 kcal Electronic energy + Delta-G solvation = -22413.854265 eV Core-core repulsion = 19030.399557 eV Total energy + Delta-G solvation = -3383.454708 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.44416 -38.82554 -37.72298 -36.68361 -34.79167 -32.32463 -31.75839 -29.89615 -27.84808 -27.27198 -26.41242 -26.08317 -24.38634 -22.10439 -21.35986 -18.95118 -17.73974 -17.06942 -16.96252 -16.60776 -16.15289 -15.79520 -15.45072 -14.90756 -14.69106 -14.49947 -14.19268 -13.82197 -13.34265 -13.15475 -12.64483 -12.54174 -12.41679 -12.21414 -12.06758 -11.76514 -11.64948 -11.42854 -11.17792 -10.95196 -10.79937 -10.71822 -10.36584 -9.93724 -9.50694 -9.06853 -8.71051 -8.29521 -7.95168 -7.73231 -6.40157 -3.97030 1.37222 1.56163 3.02379 3.21156 3.25234 3.28658 3.63919 3.72561 4.13841 4.28076 4.54216 4.85191 4.95531 5.00902 5.07412 5.10308 5.28441 5.39911 5.45878 5.49156 5.62555 5.76905 5.80186 5.83943 5.89113 5.96647 6.07555 6.14308 6.30342 6.33062 6.38054 6.52447 6.72446 6.81303 7.29242 7.53995 7.92984 8.26941 8.50390 8.95571 9.30800 9.76345 10.71969 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.029799 B = 0.004981 C = 0.004661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.403977 B = 5619.450817 C = 6006.495260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.308 6.308 3 C 0.106 3.894 4 C -0.206 4.206 5 C -0.087 4.087 6 C -0.132 4.132 7 C -0.028 4.028 8 C -0.104 4.104 9 C 0.468 3.532 10 O -0.558 6.558 11 N -0.470 5.470 12 C 0.062 3.938 13 C -0.315 4.315 14 H 0.105 0.895 15 C 0.059 3.941 16 N -0.864 5.864 17 Si 0.881 3.119 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.265 1.265 21 C 0.081 3.919 22 O -0.330 6.330 23 C 0.027 3.973 24 H 0.053 0.947 25 H 0.097 0.903 26 H 0.053 0.947 27 H 0.127 0.873 28 H 0.125 0.875 29 H 0.126 0.874 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.054 0.946 35 H 0.274 0.726 36 H 0.039 0.961 37 H 0.074 0.926 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.977 -0.832 11.970 17.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.222 6.222 3 C 0.061 3.939 4 C -0.225 4.225 5 C -0.105 4.105 6 C -0.151 4.151 7 C -0.029 4.029 8 C -0.144 4.144 9 C 0.257 3.743 10 O -0.440 6.440 11 N -0.192 5.192 12 C -0.081 4.081 13 C -0.443 4.443 14 H 0.123 0.877 15 C -0.147 4.147 16 N -0.501 5.501 17 Si 0.708 3.292 18 H -0.203 1.203 19 H -0.215 1.215 20 H -0.189 1.189 21 C 0.037 3.963 22 O -0.246 6.246 23 C -0.067 4.067 24 H 0.072 0.928 25 H 0.115 0.885 26 H 0.071 0.929 27 H 0.145 0.855 28 H 0.143 0.857 29 H 0.144 0.856 30 H 0.111 0.889 31 H 0.117 0.883 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.058 0.942 37 H 0.093 0.907 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.037 -1.174 11.499 17.424 hybrid contribution 0.160 1.090 0.165 1.114 sum -12.878 -0.084 11.664 17.375 Atomic orbital electron populations 1.23032 0.79080 1.03628 1.01102 1.86159 1.20701 1.26498 1.88807 1.19351 0.91511 0.84680 0.98392 1.21030 0.99592 0.92009 1.09838 1.20832 0.94403 0.96817 0.98492 1.20835 0.93558 0.97659 1.03028 1.19532 0.95194 0.91662 0.96527 1.20687 0.91468 1.04137 0.98104 1.20035 0.82770 0.82163 0.89341 1.90562 1.54807 1.52502 1.46115 1.43686 1.03522 1.65484 1.06556 1.22020 0.94708 1.00920 0.90485 1.19039 1.13604 1.24927 0.86681 0.87740 1.25367 0.95854 0.97401 0.96072 1.69755 1.16416 1.37561 1.26350 0.86915 0.78812 0.83917 0.79527 1.20271 1.21509 1.18941 1.17692 0.86167 0.86614 1.05870 1.85949 1.70358 1.38353 1.29968 1.23207 0.99907 0.99177 0.84434 0.92835 0.88479 0.92866 0.85488 0.85736 0.85609 0.88887 0.88344 0.92822 0.91616 0.92691 0.91606 0.94214 0.90743 0.89691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.31 -4.66 10.28 -34.23 -0.35 -5.01 16 3 C 0.11 1.74 6.70 -39.12 -0.26 1.48 16 4 C -0.21 -2.83 9.04 -39.46 -0.36 -3.18 16 5 C -0.09 -1.18 10.04 -39.58 -0.40 -1.58 16 6 C -0.13 -2.07 9.67 -39.57 -0.38 -2.45 16 7 C -0.03 -0.50 4.38 -104.50 -0.46 -0.96 16 8 C -0.10 -1.87 4.17 -29.04 -0.12 -1.99 16 9 C 0.47 10.80 6.48 -10.99 -0.07 10.72 16 10 O -0.56 -14.75 14.14 5.54 0.08 -14.67 16 11 N -0.47 -11.32 2.58 -122.19 -0.32 -11.64 16 12 C 0.06 1.21 8.78 59.85 0.53 1.74 16 13 C -0.32 -8.90 9.37 -14.93 -0.14 -9.04 16 14 H 0.11 3.31 7.90 -52.49 -0.41 2.89 16 15 C 0.06 1.62 5.29 -17.47 -0.09 1.52 16 16 N -0.86 -24.97 13.96 55.50 0.77 -24.19 16 17 Si 0.88 20.44 24.96 -169.99 -4.24 16.19 16 18 H -0.28 -5.93 6.69 56.52 0.38 -5.55 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 21 C 0.08 1.49 5.71 -39.12 -0.22 1.27 16 22 O -0.33 -6.24 9.33 -34.23 -0.32 -6.56 16 23 C 0.03 0.49 11.13 101.05 1.12 1.62 16 24 H 0.05 0.47 7.66 -51.93 -0.40 0.08 16 25 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.43 7.66 -51.93 -0.40 0.04 16 27 H 0.13 1.34 6.30 -52.48 -0.33 1.01 16 28 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 29 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 30 H 0.09 1.43 7.32 -51.93 -0.38 1.05 16 31 H 0.10 1.64 7.65 -51.93 -0.40 1.25 16 32 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 1.35 3.43 -51.93 -0.18 1.18 16 34 H 0.05 0.88 6.64 -51.93 -0.34 0.54 16 35 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 1.60 4.75 -51.93 -0.25 1.36 16 38 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 313.06 15.07 4.72 4.72 Total: -1.00 -33.48 313.06 -4.31 -37.79 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -4.78 Total: 2.98 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: 0.14 Total: 0.40 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: 0.46 Total: -35.83 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: -0.59 Total: -26.25 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.24 Total: 16.19 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.48 -4.31 -37.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259587568.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.287 kcal (2) G-P(sol) polarization free energy of solvation -33.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds